BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00034840
         (247 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]              45   3e-07
gb|AAY99339.1| pol-polyprotein [Silene latifolia]                      44   7e-07
gb|ABA27027.1| TO70-3 [Taraxacum officinale]                           45   2e-06
gb|AAF03460.1|AC009992_2 putative reverse transcriptase, 5' part...    43   6e-06

>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score = 45.4 bits (106), Expect(2) = 3e-07
 Identities = 23/51 (45%), Positives = 30/51 (58%)
 Frame = +3

Query: 93   SKV*SRQFQVGDSMLCRVTPSTRRENDGKFGPNWKGPYTVVDKRGPDTYKL 245
            SKV SR F VGD +L RV  + + E  GK G NW+GPY + +      Y+L
Sbjct: 1031 SKVKSRPFFVGDYVLRRVFDNKKEEGAGKLGINWEGPYIITEVVRNGVYRL 1081



 Score = 33.9 bits (76), Expect(2) = 3e-07
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 7    LNLVEERRDTTRIRLEEYHMHLQRQYNKKVKS 102
            L+ + ERRD   IR++ Y     R YN KVKS
Sbjct: 1004 LDTINERRDQALIRIQNYQQAAARYYNSKVKS 1035


>gb|AAY99339.1| pol-polyprotein [Silene latifolia]
          Length = 1307

 Score = 43.9 bits (102), Expect(2) = 7e-07
 Identities = 20/50 (40%), Positives = 30/50 (60%)
 Frame = +3

Query: 96   KV*SRQFQVGDSMLCRVTPSTRRENDGKFGPNWKGPYTVVDKRGPDTYKL 245
            +V  R  +VGD +L + T + +    GK   NW+GPY VV++  P TY+L
Sbjct: 1236 RVHKRDLRVGDLVLRKSTATNKGNIHGKMTTNWEGPYKVVEEMRPGTYRL 1285



 Score = 33.9 bits (76), Expect(2) = 7e-07
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +1

Query: 7    LNLVEERRDTTRIRLEEYHMHLQRQYNKKV 96
            L+LVEE RDT R+ L  Y   ++R YN +V
Sbjct: 1208 LDLVEESRDTARLNLAVYQNRMRRAYNHRV 1237


>gb|ABA27027.1| TO70-3 [Taraxacum officinale]
          Length = 97

 Score = 45.4 bits (106), Expect(2) = 2e-06
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = +3

Query: 108 RQFQVGDSMLCRVTPSTRRENDGKFGPNWKGPYTVVDKRGPDTYKL 245
           R+FQ+GD +L +   +T+   DGK  P W+GPY +  K G   Y L
Sbjct: 35  RRFQIGDLVLRKTFQNTKDPADGKLAPKWEGPYVINSKAGKGVYWL 80



 Score = 30.8 bits (68), Expect(2) = 2e-06
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 4   DLNLVEERRDTTRIRLEEYHMHLQRQYNKKVKSSR 108
           DL+ ++E RD  R+R+  +   +   YNK ++  R
Sbjct: 2   DLDTIDELRDLARLRIAAHQQRIANSYNKNIRIRR 36


>gb|AAF03460.1|AC009992_2 putative reverse transcriptase, 5' partial [Arabidopsis thaliana]
          Length = 177

 Score = 43.1 bits (100), Expect(2) = 6e-06
 Identities = 20/42 (47%), Positives = 27/42 (64%)
 Frame = +3

Query: 93  SKV*SRQFQVGDSMLCRVTPSTRRENDGKFGPNWKGPYTVVD 218
           SK+ SR F +GD +L RV  + + E  GK G NW+GPY V +
Sbjct: 105 SKINSRPFFMGDYVLKRVFDNKKEEGAGKLGINWEGPYIVTE 146



 Score = 31.6 bits (70), Expect(2) = 6e-06
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 7   LNLVEERRDTTRIRLEEYHMHLQRQYNKKVKS 102
           L+ + ERRD   IR++ Y     R YN K+ S
Sbjct: 78  LDTINERRDQALIRIQNYQQAAARYYNSKINS 109