BLASTX nr result

ID: Coptis21_contig00034782 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00034782
         (295 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002323847.1| multidrug/pheromone exporter, MDR family, AB...   121   7e-26
gb|AAP72956.1| putative MDR-like P-glycoprotein [Lactuca sativa]      116   2e-24
gb|ABX82929.1| LO4 [Solanum pennellii]                                115   4e-24
ref|NP_001234209.1| L04 [Solanum lycopersicum] gi|162280535|gb|A...   115   4e-24
ref|XP_002877137.1| P-glycoprotein 19 [Arabidopsis lyrata subsp....   112   2e-23

>ref|XP_002323847.1| multidrug/pheromone exporter, MDR family, ABC transporter family
           [Populus trichocarpa] gi|222866849|gb|EEF03980.1|
           multidrug/pheromone exporter, MDR family, ABC
           transporter family [Populus trichocarpa]
          Length = 1251

 Score =  121 bits (303), Expect = 7e-26
 Identities = 59/85 (69%), Positives = 69/85 (81%)
 Frame = -3

Query: 257 MAETVEQQKEVVTDPENKMKKLKENSLPFYKLFSFADKYDYLLMLGGSIGAFVHGSAMPV 78
           MAET E  +  + + E K    KE SLPFY+LFSFADKYD+LLM+ GSIGA +HGS+MPV
Sbjct: 1   MAETTEANRPSLPEAEKK----KEQSLPFYQLFSFADKYDWLLMISGSIGAIIHGSSMPV 56

Query: 77  FFLLFGEMVNGFGKNQSDLNQMTHQ 3
           FFLLFGEMVNGFGKNQSDL +MTH+
Sbjct: 57  FFLLFGEMVNGFGKNQSDLYKMTHE 81


>gb|AAP72956.1| putative MDR-like P-glycoprotein [Lactuca sativa]
          Length = 1251

 Score =  116 bits (290), Expect = 2e-24
 Identities = 56/85 (65%), Positives = 66/85 (77%)
 Frame = -3

Query: 257 MAETVEQQKEVVTDPENKMKKLKENSLPFYKLFSFADKYDYLLMLGGSIGAFVHGSAMPV 78
           MAET E  K +    E    K KE S+PFY+LFSFADK+DY LM+ GSIGA +HGS+MP 
Sbjct: 1   MAETTEASKAMPAQAE----KRKEQSIPFYQLFSFADKFDYALMILGSIGAIIHGSSMPF 56

Query: 77  FFLLFGEMVNGFGKNQSDLNQMTHQ 3
           FFLLFG+M+NGFGKNQSDLN MTH+
Sbjct: 57  FFLLFGQMINGFGKNQSDLNTMTHE 81


>gb|ABX82929.1| LO4 [Solanum pennellii]
          Length = 1249

 Score =  115 bits (288), Expect = 4e-24
 Identities = 60/85 (70%), Positives = 68/85 (80%)
 Frame = -3

Query: 257 MAETVEQQKEVVTDPENKMKKLKENSLPFYKLFSFADKYDYLLMLGGSIGAFVHGSAMPV 78
           MAET E +      PE + KK  E SLPFY+LFSFADKYDYLLM  GSIGA +HGS+MPV
Sbjct: 1   MAETTEGKSM----PEAEKKK--EQSLPFYQLFSFADKYDYLLMTCGSIGAILHGSSMPV 54

Query: 77  FFLLFGEMVNGFGKNQSDLNQMTHQ 3
           FFLLFGEMVNGFGKNQ DL++MTH+
Sbjct: 55  FFLLFGEMVNGFGKNQMDLHKMTHE 79


>ref|NP_001234209.1| L04 [Solanum lycopersicum] gi|162280535|gb|ABX82928.1| L04 [Solanum
           lycopersicum]
          Length = 1249

 Score =  115 bits (288), Expect = 4e-24
 Identities = 60/85 (70%), Positives = 68/85 (80%)
 Frame = -3

Query: 257 MAETVEQQKEVVTDPENKMKKLKENSLPFYKLFSFADKYDYLLMLGGSIGAFVHGSAMPV 78
           MAET E +      PE + KK  E SLPFY+LFSFADKYDYLLM  GSIGA +HGS+MPV
Sbjct: 1   MAETTEGKSM----PEAEKKK--EQSLPFYQLFSFADKYDYLLMTCGSIGAILHGSSMPV 54

Query: 77  FFLLFGEMVNGFGKNQSDLNQMTHQ 3
           FFLLFGEMVNGFGKNQ DL++MTH+
Sbjct: 55  FFLLFGEMVNGFGKNQMDLHKMTHE 79


>ref|XP_002877137.1| P-glycoprotein 19 [Arabidopsis lyrata subsp. lyrata]
           gi|297322975|gb|EFH53396.1| P-glycoprotein 19
           [Arabidopsis lyrata subsp. lyrata]
          Length = 1252

 Score =  112 bits (281), Expect = 2e-23
 Identities = 55/77 (71%), Positives = 63/77 (81%)
 Frame = -3

Query: 233 KEVVTDPENKMKKLKENSLPFYKLFSFADKYDYLLMLGGSIGAFVHGSAMPVFFLLFGEM 54
           K V T+ E K    KE SLPF+KLFSFADK+DYLLM  GS+GA VHGS+MPVFFLLFG+M
Sbjct: 10  KTVPTEAEKK----KEQSLPFFKLFSFADKFDYLLMFVGSLGAIVHGSSMPVFFLLFGQM 65

Query: 53  VNGFGKNQSDLNQMTHQ 3
           VNGFGKNQ DL+QM H+
Sbjct: 66  VNGFGKNQMDLHQMVHE 82


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