BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00034713
         (590 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003553316.1| PREDICTED: transcription-repair-coupling fac...   182   4e-44
ref|XP_003548486.1| PREDICTED: transcription-repair-coupling fac...   180   2e-43
ref|XP_002320427.1| predicted protein [Populus trichocarpa] gi|2...   179   2e-43
emb|CBI21248.3| unnamed protein product [Vitis vinifera]              178   7e-43
ref|XP_002276313.1| PREDICTED: transcription-repair-coupling fac...   178   7e-43

>ref|XP_003553316.1| PREDICTED: transcription-repair-coupling factor-like [Glycine max]
          Length = 823

 Score =  182 bits (462), Expect = 4e-44
 Identities = 90/121 (74%), Positives = 101/121 (83%)
 Frame = +3

Query: 3    EKDIWSLMQFTENLRRQYGKEPRSMEILLKKLYVRRMAADLGIIRIYASDKMVGMTTNMS 182
            EKDIWSLMQFTENLRRQYGKEPRSMEILLKKLY+RRMAADLGI RIY+S KM+ M TNMS
Sbjct: 703  EKDIWSLMQFTENLRRQYGKEPRSMEILLKKLYLRRMAADLGITRIYSSGKMIYMKTNMS 762

Query: 183  RKVFQLITESMISDIHRNSLVFEKNQIKAXXXXXXXXXXXXNWIFQCLAELHASLPALVK 362
            +KVF+++TESM SD+HRNSLV E +QIKA            NWIFQCLAELHASLP+ +K
Sbjct: 763  KKVFKMMTESMASDLHRNSLVLEGDQIKAELLLELPKEQLLNWIFQCLAELHASLPSFIK 822

Query: 363  Y 365
            Y
Sbjct: 823  Y 823


>ref|XP_003548486.1| PREDICTED: transcription-repair-coupling factor-like [Glycine max]
          Length = 826

 Score =  180 bits (456), Expect = 2e-43
 Identities = 89/121 (73%), Positives = 100/121 (82%)
 Frame = +3

Query: 3    EKDIWSLMQFTENLRRQYGKEPRSMEILLKKLYVRRMAADLGIIRIYASDKMVGMTTNMS 182
            EKDIWSLMQFTENLRRQYGKEPRSMEILLKKLY+RRMAADLGI  IY+S KM+ M TNMS
Sbjct: 706  EKDIWSLMQFTENLRRQYGKEPRSMEILLKKLYLRRMAADLGITSIYSSGKMIYMKTNMS 765

Query: 183  RKVFQLITESMISDIHRNSLVFEKNQIKAXXXXXXXXXXXXNWIFQCLAELHASLPALVK 362
            +KVF+++TESM SD+HRNSLV E +QIKA            NWIFQCLAELHASLP+ +K
Sbjct: 766  KKVFKMMTESMASDLHRNSLVLEGDQIKAELLLELPKEQLLNWIFQCLAELHASLPSFIK 825

Query: 363  Y 365
            Y
Sbjct: 826  Y 826


>ref|XP_002320427.1| predicted protein [Populus trichocarpa] gi|222861200|gb|EEE98742.1|
            predicted protein [Populus trichocarpa]
          Length = 817

 Score =  179 bits (455), Expect = 2e-43
 Identities = 88/121 (72%), Positives = 100/121 (82%)
 Frame = +3

Query: 3    EKDIWSLMQFTENLRRQYGKEPRSMEILLKKLYVRRMAADLGIIRIYASDKMVGMTTNMS 182
            E DIWSLMQFTENLRRQYGKEP SMEI+LKKLYVRRMAAD+GI RIYAS KMVGM TNMS
Sbjct: 697  ETDIWSLMQFTENLRRQYGKEPSSMEIILKKLYVRRMAADIGITRIYASGKMVGMETNMS 756

Query: 183  RKVFQLITESMISDIHRNSLVFEKNQIKAXXXXXXXXXXXXNWIFQCLAELHASLPALVK 362
            +KVF+L+T+SM S++HRNSL F+ N+IKA            NWIFQC+AELHA LPAL+K
Sbjct: 757  KKVFKLMTDSMSSEMHRNSLFFDGNEIKAELLLELPRAQLLNWIFQCIAELHACLPALIK 816

Query: 363  Y 365
            Y
Sbjct: 817  Y 817


>emb|CBI21248.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  178 bits (451), Expect = 7e-43
 Identities = 90/121 (74%), Positives = 100/121 (82%)
 Frame = +3

Query: 3   EKDIWSLMQFTENLRRQYGKEPRSMEILLKKLYVRRMAADLGIIRIYASDKMVGMTTNMS 182
           E+DIWSLMQFTENLRRQYGKEP SME+LLKKLYV+RMAADLGI RIYAS K V M T M+
Sbjct: 520 EEDIWSLMQFTENLRRQYGKEPYSMEVLLKKLYVKRMAADLGITRIYASGKTVIMRTKMN 579

Query: 183 RKVFQLITESMISDIHRNSLVFEKNQIKAXXXXXXXXXXXXNWIFQCLAELHASLPALVK 362
           +KVF+LIT+SM SDI RNSLVFE+NQIKA            NW+FQCLAELHASLPAL+K
Sbjct: 580 KKVFKLITDSMASDIIRNSLVFEENQIKAELLLELPREQFLNWVFQCLAELHASLPALIK 639

Query: 363 Y 365
           Y
Sbjct: 640 Y 640


>ref|XP_002276313.1| PREDICTED: transcription-repair-coupling factor-like [Vitis vinifera]
          Length = 823

 Score =  178 bits (451), Expect = 7e-43
 Identities = 90/121 (74%), Positives = 100/121 (82%)
 Frame = +3

Query: 3    EKDIWSLMQFTENLRRQYGKEPRSMEILLKKLYVRRMAADLGIIRIYASDKMVGMTTNMS 182
            E+DIWSLMQFTENLRRQYGKEP SME+LLKKLYV+RMAADLGI RIYAS K V M T M+
Sbjct: 703  EEDIWSLMQFTENLRRQYGKEPYSMEVLLKKLYVKRMAADLGITRIYASGKTVIMRTKMN 762

Query: 183  RKVFQLITESMISDIHRNSLVFEKNQIKAXXXXXXXXXXXXNWIFQCLAELHASLPALVK 362
            +KVF+LIT+SM SDI RNSLVFE+NQIKA            NW+FQCLAELHASLPAL+K
Sbjct: 763  KKVFKLITDSMASDIIRNSLVFEENQIKAELLLELPREQFLNWVFQCLAELHASLPALIK 822

Query: 363  Y 365
            Y
Sbjct: 823  Y 823