BLASTX nr result
ID: Coptis21_contig00034669
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00034669
(614 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|2... 66 8e-16
ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2... 65 8e-16
ref|XP_002313562.1| predicted protein [Populus trichocarpa] gi|2... 65 1e-15
ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|2... 64 3e-15
gb|ABD28730.1| Ribonuclease H [Medicago truncatula] 55 1e-13
>ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|222874875|gb|EEF12006.1|
predicted protein [Populus trichocarpa]
Length = 1386
Score = 65.9 bits (159), Expect(2) = 8e-16
Identities = 29/65 (44%), Positives = 39/65 (60%)
Frame = +1
Query: 82 EDSLVWTPSSSGRFISKSAYMALKRSRNKVRWHKLVWGKLVVPKHSFTLWQMFSGSLPTQ 261
+D +VW S + RF+ K A+ L+R R V WH +VW K VP+HSF LW L TQ
Sbjct: 1184 KDEIVWLDSPNHRFLVKVAWEHLRRHRQMVEWHDIVWFKNAVPRHSFLLWMAVQQKLTTQ 1243
Query: 262 DRLIK 276
D+L +
Sbjct: 1244 DKLYR 1248
Score = 43.1 bits (100), Expect(2) = 8e-16
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Frame = +3
Query: 294 SKCCLCNNARENTKHLFFQCPYSKELWSGVKMHIGIHTDERNANREWSSILRLC----GR 461
++C LC E+ HLFF+C Y+K +W + D + W +R
Sbjct: 1255 NRCSLCLRNNEDHNHLFFECSYTKAIW----WDVCDRCDIPRMTKGWDEWIRWATVSWHG 1310
Query: 462 RNKVAEVIKVYVCAAVNYIWMERNNRRFRNTSCT 563
++ V K+ A V ++W ERN R F S T
Sbjct: 1311 KSFVNFSRKLSFAATVYHVWQERNARIFAGMSRT 1344
>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
predicted protein [Populus trichocarpa]
Length = 517
Score = 65.1 bits (157), Expect(2) = 8e-16
Identities = 30/63 (47%), Positives = 37/63 (58%)
Frame = +1
Query: 82 EDSLVWTPSSSGRFISKSAYMALKRSRNKVRWHKLVWGKLVVPKHSFTLWQMFSGSLPTQ 261
+D LVW S + RF K A+ L+R R V WH +VW K VP+HSF LW L TQ
Sbjct: 311 KDELVWLDSPNHRFSVKVAWEQLRRHRQMVEWHDIVWFKNAVPRHSFLLWMAVQQKLTTQ 370
Query: 262 DRL 270
D+L
Sbjct: 371 DKL 373
Score = 43.9 bits (102), Expect(2) = 8e-16
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Frame = +3
Query: 294 SKCCLCNNARENTKHLFFQCPYSKELWSGVKMHIGIHTDERNANREWSSILRLC----GR 461
++C LC E+ HLFF+C Y+K +W + D + W +R
Sbjct: 382 NRCSLCLRNNEDHNHLFFECSYTKAIW----WDVCDRCDIPRMTKGWDEWIRWATVSWHG 437
Query: 462 RNKVAEVIKVYVCAAVNYIWMERNNRRFRNTSCT 563
++ V K+ A V ++W ERN R F S T
Sbjct: 438 KSFVNFSCKLSFAATVYHVWQERNARIFAGMSRT 471
>ref|XP_002313562.1| predicted protein [Populus trichocarpa] gi|222849970|gb|EEE87517.1|
predicted protein [Populus trichocarpa]
Length = 331
Score = 65.5 bits (158), Expect(2) = 1e-15
Identities = 29/63 (46%), Positives = 39/63 (61%)
Frame = +1
Query: 82 EDSLVWTPSSSGRFISKSAYMALKRSRNKVRWHKLVWGKLVVPKHSFTLWQMFSGSLPTQ 261
+D +VW S + RF K A+ L+R R+ V WH +VW K VP+HSF LW + L TQ
Sbjct: 129 KDEIVWLDSPNHRFSVKVAWEQLRRHRHMVEWHDIVWFKNAVPRHSFLLWMVVQQKLTTQ 188
Query: 262 DRL 270
D+L
Sbjct: 189 DKL 191
Score = 43.1 bits (100), Expect(2) = 1e-15
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Frame = +3
Query: 294 SKCCLCNNARENTKHLFFQCPYSKELWSGVKMHIGIHTDERNANREWSSILRLC----GR 461
++C LC E+ HLFF+C Y+K +W + D + W +R
Sbjct: 200 NRCSLCLRNNEDHNHLFFECSYTKAIW----WDVCDRCDIPRMTKGWDEWIRWATVSWHG 255
Query: 462 RNKVAEVIKVYVCAAVNYIWMERNNRRFRNTSCT 563
++ V K+ A V ++W ERN R F S T
Sbjct: 256 KSFVNFSRKLSFAATVYHVWQERNARIFAGLSRT 289
>ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|222870351|gb|EEF07482.1|
predicted protein [Populus trichocarpa]
Length = 1046
Score = 64.3 bits (155), Expect(2) = 3e-15
Identities = 28/63 (44%), Positives = 38/63 (60%)
Frame = +1
Query: 82 EDSLVWTPSSSGRFISKSAYMALKRSRNKVRWHKLVWGKLVVPKHSFTLWQMFSGSLPTQ 261
+D ++W S + RF K A+ L+R R V WH +VW K VP+HSF LW + L TQ
Sbjct: 844 KDEIIWLDSPNHRFSVKVAWEQLRRHRQLVEWHDIVWFKNAVPRHSFLLWMVVQQKLTTQ 903
Query: 262 DRL 270
D+L
Sbjct: 904 DKL 906
Score = 42.7 bits (99), Expect(2) = 3e-15
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Frame = +3
Query: 294 SKCCLCNNARENTKHLFFQCPYSKELWSGVKMHIGIHTDERNANREWSSILRLC----GR 461
++C LC E+ HLFF+C Y+K +W + D + W +R
Sbjct: 915 NRCSLCLRNNEDHNHLFFECSYTKAIW----WDVCDRCDIPRMTKGWDEWIRWATVSWHG 970
Query: 462 RNKVAEVIKVYVCAAVNYIWMERNNRRFRNTSCT 563
++ + K+ A V ++W ERN R F S T
Sbjct: 971 KSFINFSRKLSFAATVYHVWQERNARIFAGLSRT 1004
>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
Length = 409
Score = 55.1 bits (131), Expect(2) = 1e-13
Identities = 30/107 (28%), Positives = 48/107 (44%)
Frame = +1
Query: 1 VIFNFGNCQDEVLRDSIYGTQIEDQLLEDSLVWTPSSSGRFISKSAYMALKRSRNKVRWH 180
++ +F +D L + I+ + D L+WT S G +K A+ L V W
Sbjct: 13 ILSDFFAYKDNALVEKIHQIALPLDETLDKLIWTDSVDGDLSNKLAFSFLPGHGPTVHWA 72
Query: 181 KLVWGKLVVPKHSFTLWQMFSGSLPTQDRLIKKRYSTVLSVACVIMR 321
K++W P +F W+ LPT D L +KR ++S+ C R
Sbjct: 73 KMLWNAYTPPTGAFITWRFLHNKLPTDDNL-RKRGCYIVSICCCFCR 118
Score = 46.6 bits (109), Expect(2) = 1e-13
Identities = 28/100 (28%), Positives = 44/100 (44%)
Frame = +3
Query: 300 CCLCNNARENTKHLFFQCPYSKELWSGVKMHIGIHTDERNANREWSSILRLCGRRNKVAE 479
CC C E + H+F QCP + +LW + H D +SSIL + V
Sbjct: 114 CCFCRKQAETSSHIFLQCPVTLQLWDWLLKATDQHLD-------FSSILNI---SRMVQH 163
Query: 480 VIKVYVCAAVNYIWMERNNRRFRNTSCTVAGLLIRILKDM 599
V+ + + IW+E NN+ F ++ L IL ++
Sbjct: 164 VMNSAIVHIMWSIWLECNNKYFDGVQKPMSTLFNTILAEV 203