BLASTX nr result

ID: Coptis21_contig00034626 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00034626
         (276 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002297821.1| predicted protein [Populus trichocarpa] gi|2...    66   3e-09
ref|XP_002518130.1| conserved hypothetical protein [Ricinus comm...    58   9e-07

>ref|XP_002297821.1| predicted protein [Populus trichocarpa] gi|222845079|gb|EEE82626.1|
           predicted protein [Populus trichocarpa]
          Length = 106

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 36/66 (54%), Positives = 44/66 (66%), Gaps = 5/66 (7%)
 Frame = +1

Query: 91  PLKSNLKKATTV----DQVEMRTGSRKVNWPD-AHGKDIAHVQQIESSTNGLEDGKLEGL 255
           PLKS LKK T      +Q       RKV+WPD AHG DIAHV + ESST+  +DG+LEG+
Sbjct: 40  PLKSTLKKTTNAIVGENQARKDHQKRKVSWPDIAHGTDIAHVLEFESSTS--DDGELEGV 97

Query: 256 KNSCTC 273
           +NSC C
Sbjct: 98  RNSCVC 103


>ref|XP_002518130.1| conserved hypothetical protein [Ricinus communis]
           gi|223542726|gb|EEF44263.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 202

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 32/62 (51%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
 Frame = +1

Query: 79  TTNLPLKSNLKKATTV----DQVEMRTGSRKVNWPDAHGKDIAHVQQIESSTNGLEDGKL 246
           TT   LKSNLK+ TT     +    +   RKV+WPDAHGKDIAHV + E S +  E G+L
Sbjct: 111 TTAATLKSNLKRTTTAVLEENNQSRKAEKRKVSWPDAHGKDIAHVHEFEPSIS--EYGEL 168

Query: 247 EG 252
           EG
Sbjct: 169 EG 170


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