BLASTX nr result
ID: Coptis21_contig00034611
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00034611 (428 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 145 3e-33 ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containi... 145 3e-33 ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containi... 139 2e-31 emb|CBI24422.3| unnamed protein product [Vitis vinifera] 139 2e-31 ref|XP_002523876.1| pentatricopeptide repeat-containing protein,... 139 2e-31 >ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g05750, chloroplastic-like [Cucumis sativus] Length = 525 Score = 145 bits (367), Expect = 3e-33 Identities = 76/158 (48%), Positives = 99/158 (62%), Gaps = 19/158 (12%) Frame = -1 Query: 419 ACSSTTQLPTWNPNTV---NKSRLLIHRK----------------LDQTVSWTSSITHYC 297 A S QLP + P+++ N ++L R +D V WTSS+ YC Sbjct: 9 ATPSQLQLPPFTPSSIPLSNPTKLNFPRSPNSPHRNISSKFNPNSVDPIVLWTSSLARYC 68 Query: 296 KKGMLSEAASEFTRMRLAGNEPNDITFVTLLSGCAHFPSKCHLFGVSIHGYVSKLGFDKE 117 + G LSEAA+EFTRMRLAG EPN ITF+TLLS CA FPS+ F S+HGY K G D Sbjct: 69 RNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHGYACKYGLDTG 128 Query: 116 NVMLWTAVMDLYGKCCKVGLARRVFDEMSVKNSMSWNT 3 +VM+ TA++D+Y KC ++G AR+VF + VKNS+SWNT Sbjct: 129 HVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNT 166 Score = 57.8 bits (138), Expect = 9e-07 Identities = 30/109 (27%), Positives = 61/109 (55%) Frame = -1 Query: 329 VSWTSSITHYCKKGMLSEAASEFTRMRLAGNEPNDITFVTLLSGCAHFPSKCHLFGVSIH 150 +SWT+ I K G +A F +M+ +G + ++ + +L+ CA + G+ +H Sbjct: 193 ISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALT--LGLWVH 250 Query: 149 GYVSKLGFDKENVMLWTAVMDLYGKCCKVGLARRVFDEMSVKNSMSWNT 3 +V F K+N+ + +++D+Y +C + AR+VF +M+ + +SWN+ Sbjct: 251 RFVMPQEF-KDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNS 298 >ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic-like [Cucumis sativus] Length = 525 Score = 145 bits (367), Expect = 3e-33 Identities = 76/158 (48%), Positives = 99/158 (62%), Gaps = 19/158 (12%) Frame = -1 Query: 419 ACSSTTQLPTWNPNTV---NKSRLLIHRK----------------LDQTVSWTSSITHYC 297 A S QLP + P+++ N ++L R +D V WTSS+ YC Sbjct: 9 ATPSQLQLPPFTPSSIPLSNPTKLNFPRSPNSPHRNISSKFNPNSVDPIVLWTSSLARYC 68 Query: 296 KKGMLSEAASEFTRMRLAGNEPNDITFVTLLSGCAHFPSKCHLFGVSIHGYVSKLGFDKE 117 + G LSEAA+EFTRMRLAG EPN ITF+TLLS CA FPS+ F S+HGY K G D Sbjct: 69 RNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHGYACKYGLDTG 128 Query: 116 NVMLWTAVMDLYGKCCKVGLARRVFDEMSVKNSMSWNT 3 +VM+ TA++D+Y KC ++G AR+VF + VKNS+SWNT Sbjct: 129 HVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNT 166 Score = 57.8 bits (138), Expect = 9e-07 Identities = 30/109 (27%), Positives = 61/109 (55%) Frame = -1 Query: 329 VSWTSSITHYCKKGMLSEAASEFTRMRLAGNEPNDITFVTLLSGCAHFPSKCHLFGVSIH 150 +SWT+ I K G +A F +M+ +G + ++ + +L+ CA + G+ +H Sbjct: 193 ISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALT--LGLWVH 250 Query: 149 GYVSKLGFDKENVMLWTAVMDLYGKCCKVGLARRVFDEMSVKNSMSWNT 3 +V F K+N+ + +++D+Y +C + AR+VF +M+ + +SWN+ Sbjct: 251 RFVMPQEF-KDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNS 298 >ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic-like [Vitis vinifera] Length = 518 Score = 139 bits (350), Expect = 2e-31 Identities = 67/116 (57%), Positives = 85/116 (73%) Frame = -1 Query: 350 HRKLDQTVSWTSSITHYCKKGMLSEAASEFTRMRLAGNEPNDITFVTLLSGCAHFPSKCH 171 H +D VSWTSSI +C+ G L EAA+EF+RM++AG PN ITF+TLLS C FP + Sbjct: 48 HSPIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGL 107 Query: 170 LFGVSIHGYVSKLGFDKENVMLWTAVMDLYGKCCKVGLARRVFDEMSVKNSMSWNT 3 FG SIH YV KLG D ENVM+ TA++D+Y KC ++ LA +FDEM V+NS+SWNT Sbjct: 108 RFGGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNT 163 Score = 78.2 bits (191), Expect = 7e-13 Identities = 39/109 (35%), Positives = 70/109 (64%) Frame = -1 Query: 329 VSWTSSITHYCKKGMLSEAASEFTRMRLAGNEPNDITFVTLLSGCAHFPSKCHLFGVSIH 150 +SWTS I + KKG +A F M+LAG EP+ +T +++L+ CA+ + G+ I+ Sbjct: 190 ISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALG--LGLWIN 247 Query: 149 GYVSKLGFDKENVMLWTAVMDLYGKCCKVGLARRVFDEMSVKNSMSWNT 3 +V K F K+N+ + +++D+Y +C + LAR+VF++M ++ +SWN+ Sbjct: 248 RFVMKQDF-KDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNS 295 >emb|CBI24422.3| unnamed protein product [Vitis vinifera] Length = 502 Score = 139 bits (350), Expect = 2e-31 Identities = 67/116 (57%), Positives = 85/116 (73%) Frame = -1 Query: 350 HRKLDQTVSWTSSITHYCKKGMLSEAASEFTRMRLAGNEPNDITFVTLLSGCAHFPSKCH 171 H +D VSWTSSI +C+ G L EAA+EF+RM++AG PN ITF+TLLS C FP + Sbjct: 48 HSPIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGL 107 Query: 170 LFGVSIHGYVSKLGFDKENVMLWTAVMDLYGKCCKVGLARRVFDEMSVKNSMSWNT 3 FG SIH YV KLG D ENVM+ TA++D+Y KC ++ LA +FDEM V+NS+SWNT Sbjct: 108 RFGGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNT 163 Score = 78.2 bits (191), Expect = 7e-13 Identities = 39/109 (35%), Positives = 70/109 (64%) Frame = -1 Query: 329 VSWTSSITHYCKKGMLSEAASEFTRMRLAGNEPNDITFVTLLSGCAHFPSKCHLFGVSIH 150 +SWTS I + KKG +A F M+LAG EP+ +T +++L+ CA+ + G+ I+ Sbjct: 190 ISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALG--LGLWIN 247 Query: 149 GYVSKLGFDKENVMLWTAVMDLYGKCCKVGLARRVFDEMSVKNSMSWNT 3 +V K F K+N+ + +++D+Y +C + LAR+VF++M ++ +SWN+ Sbjct: 248 RFVMKQDF-KDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNS 295 >ref|XP_002523876.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223536964|gb|EEF38602.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 384 Score = 139 bits (350), Expect = 2e-31 Identities = 68/116 (58%), Positives = 85/116 (73%) Frame = -1 Query: 350 HRKLDQTVSWTSSITHYCKKGMLSEAASEFTRMRLAGNEPNDITFVTLLSGCAHFPSKCH 171 +R +D T++WTSSI+ +C G L EAAS FT+MRLA EPN ITF TL+S CA FP + Sbjct: 53 NRSIDLTIAWTSSISRHCCNGQLPEAASLFTQMRLAAVEPNHITFATLISFCADFPFQGK 112 Query: 170 LFGVSIHGYVSKLGFDKENVMLWTAVMDLYGKCCKVGLARRVFDEMSVKNSMSWNT 3 G SIH YV KLG D NVM+ TA++D+Y KC KV LAR +FD++ VKNS+SWNT Sbjct: 113 SIGPSIHAYVRKLGLDTCNVMVGTALVDMYAKCGKVQLARLIFDDLKVKNSVSWNT 168 Score = 69.3 bits (168), Expect = 3e-10 Identities = 37/109 (33%), Positives = 64/109 (58%) Frame = -1 Query: 329 VSWTSSITHYCKKGMLSEAASEFTRMRLAGNEPNDITFVTLLSGCAHFPSKCHLFGVSIH 150 +SWT I + KKG +A F M+++ EP+ +T + +LS CA+ + G+ IH Sbjct: 195 ISWTVFIDGFIKKGHFEQALEWFREMQVSKVEPDYVTIIAVLSACANLGALG--LGLWIH 252 Query: 149 GYVSKLGFDKENVMLWTAVMDLYGKCCKVGLARRVFDEMSVKNSMSWNT 3 YV + F + NV + +++D+Y +C + LAR+VF +M + +SWN+ Sbjct: 253 RYVLEKEF-RNNVRIGNSLIDMYSRCGCIELARQVFHKMLKRTLVSWNS 300