BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00034611
         (428 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   145   3e-33
ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containi...   145   3e-33
ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containi...   139   2e-31
emb|CBI24422.3| unnamed protein product [Vitis vinifera]              139   2e-31
ref|XP_002523876.1| pentatricopeptide repeat-containing protein,...   139   2e-31

>ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05750, chloroplastic-like [Cucumis sativus]
          Length = 525

 Score =  145 bits (367), Expect = 3e-33
 Identities = 76/158 (48%), Positives = 99/158 (62%), Gaps = 19/158 (12%)
 Frame = -1

Query: 419 ACSSTTQLPTWNPNTV---NKSRLLIHRK----------------LDQTVSWTSSITHYC 297
           A  S  QLP + P+++   N ++L   R                 +D  V WTSS+  YC
Sbjct: 9   ATPSQLQLPPFTPSSIPLSNPTKLNFPRSPNSPHRNISSKFNPNSVDPIVLWTSSLARYC 68

Query: 296 KKGMLSEAASEFTRMRLAGNEPNDITFVTLLSGCAHFPSKCHLFGVSIHGYVSKLGFDKE 117
           + G LSEAA+EFTRMRLAG EPN ITF+TLLS CA FPS+   F  S+HGY  K G D  
Sbjct: 69  RNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHGYACKYGLDTG 128

Query: 116 NVMLWTAVMDLYGKCCKVGLARRVFDEMSVKNSMSWNT 3
           +VM+ TA++D+Y KC ++G AR+VF  + VKNS+SWNT
Sbjct: 129 HVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNT 166



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 30/109 (27%), Positives = 61/109 (55%)
 Frame = -1

Query: 329 VSWTSSITHYCKKGMLSEAASEFTRMRLAGNEPNDITFVTLLSGCAHFPSKCHLFGVSIH 150
           +SWT+ I    K G   +A   F +M+ +G   + ++ + +L+ CA   +     G+ +H
Sbjct: 193 ISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALT--LGLWVH 250

Query: 149 GYVSKLGFDKENVMLWTAVMDLYGKCCKVGLARRVFDEMSVKNSMSWNT 3
            +V    F K+N+ +  +++D+Y +C  +  AR+VF +M+ +  +SWN+
Sbjct: 251 RFVMPQEF-KDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNS 298


>ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Cucumis sativus]
          Length = 525

 Score =  145 bits (367), Expect = 3e-33
 Identities = 76/158 (48%), Positives = 99/158 (62%), Gaps = 19/158 (12%)
 Frame = -1

Query: 419 ACSSTTQLPTWNPNTV---NKSRLLIHRK----------------LDQTVSWTSSITHYC 297
           A  S  QLP + P+++   N ++L   R                 +D  V WTSS+  YC
Sbjct: 9   ATPSQLQLPPFTPSSIPLSNPTKLNFPRSPNSPHRNISSKFNPNSVDPIVLWTSSLARYC 68

Query: 296 KKGMLSEAASEFTRMRLAGNEPNDITFVTLLSGCAHFPSKCHLFGVSIHGYVSKLGFDKE 117
           + G LSEAA+EFTRMRLAG EPN ITF+TLLS CA FPS+   F  S+HGY  K G D  
Sbjct: 69  RNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHGYACKYGLDTG 128

Query: 116 NVMLWTAVMDLYGKCCKVGLARRVFDEMSVKNSMSWNT 3
           +VM+ TA++D+Y KC ++G AR+VF  + VKNS+SWNT
Sbjct: 129 HVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNT 166



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 30/109 (27%), Positives = 61/109 (55%)
 Frame = -1

Query: 329 VSWTSSITHYCKKGMLSEAASEFTRMRLAGNEPNDITFVTLLSGCAHFPSKCHLFGVSIH 150
           +SWT+ I    K G   +A   F +M+ +G   + ++ + +L+ CA   +     G+ +H
Sbjct: 193 ISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALT--LGLWVH 250

Query: 149 GYVSKLGFDKENVMLWTAVMDLYGKCCKVGLARRVFDEMSVKNSMSWNT 3
            +V    F K+N+ +  +++D+Y +C  +  AR+VF +M+ +  +SWN+
Sbjct: 251 RFVMPQEF-KDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNS 298


>ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Vitis vinifera]
          Length = 518

 Score =  139 bits (350), Expect = 2e-31
 Identities = 67/116 (57%), Positives = 85/116 (73%)
 Frame = -1

Query: 350 HRKLDQTVSWTSSITHYCKKGMLSEAASEFTRMRLAGNEPNDITFVTLLSGCAHFPSKCH 171
           H  +D  VSWTSSI  +C+ G L EAA+EF+RM++AG  PN ITF+TLLS C  FP +  
Sbjct: 48  HSPIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGL 107

Query: 170 LFGVSIHGYVSKLGFDKENVMLWTAVMDLYGKCCKVGLARRVFDEMSVKNSMSWNT 3
            FG SIH YV KLG D ENVM+ TA++D+Y KC ++ LA  +FDEM V+NS+SWNT
Sbjct: 108 RFGGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNT 163



 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 39/109 (35%), Positives = 70/109 (64%)
 Frame = -1

Query: 329 VSWTSSITHYCKKGMLSEAASEFTRMRLAGNEPNDITFVTLLSGCAHFPSKCHLFGVSIH 150
           +SWTS I  + KKG   +A   F  M+LAG EP+ +T +++L+ CA+  +     G+ I+
Sbjct: 190 ISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALG--LGLWIN 247

Query: 149 GYVSKLGFDKENVMLWTAVMDLYGKCCKVGLARRVFDEMSVKNSMSWNT 3
            +V K  F K+N+ +  +++D+Y +C  + LAR+VF++M  ++ +SWN+
Sbjct: 248 RFVMKQDF-KDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNS 295


>emb|CBI24422.3| unnamed protein product [Vitis vinifera]
          Length = 502

 Score =  139 bits (350), Expect = 2e-31
 Identities = 67/116 (57%), Positives = 85/116 (73%)
 Frame = -1

Query: 350 HRKLDQTVSWTSSITHYCKKGMLSEAASEFTRMRLAGNEPNDITFVTLLSGCAHFPSKCH 171
           H  +D  VSWTSSI  +C+ G L EAA+EF+RM++AG  PN ITF+TLLS C  FP +  
Sbjct: 48  HSPIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGL 107

Query: 170 LFGVSIHGYVSKLGFDKENVMLWTAVMDLYGKCCKVGLARRVFDEMSVKNSMSWNT 3
            FG SIH YV KLG D ENVM+ TA++D+Y KC ++ LA  +FDEM V+NS+SWNT
Sbjct: 108 RFGGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNT 163



 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 39/109 (35%), Positives = 70/109 (64%)
 Frame = -1

Query: 329 VSWTSSITHYCKKGMLSEAASEFTRMRLAGNEPNDITFVTLLSGCAHFPSKCHLFGVSIH 150
           +SWTS I  + KKG   +A   F  M+LAG EP+ +T +++L+ CA+  +     G+ I+
Sbjct: 190 ISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALG--LGLWIN 247

Query: 149 GYVSKLGFDKENVMLWTAVMDLYGKCCKVGLARRVFDEMSVKNSMSWNT 3
            +V K  F K+N+ +  +++D+Y +C  + LAR+VF++M  ++ +SWN+
Sbjct: 248 RFVMKQDF-KDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNS 295


>ref|XP_002523876.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223536964|gb|EEF38602.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 384

 Score =  139 bits (350), Expect = 2e-31
 Identities = 68/116 (58%), Positives = 85/116 (73%)
 Frame = -1

Query: 350 HRKLDQTVSWTSSITHYCKKGMLSEAASEFTRMRLAGNEPNDITFVTLLSGCAHFPSKCH 171
           +R +D T++WTSSI+ +C  G L EAAS FT+MRLA  EPN ITF TL+S CA FP +  
Sbjct: 53  NRSIDLTIAWTSSISRHCCNGQLPEAASLFTQMRLAAVEPNHITFATLISFCADFPFQGK 112

Query: 170 LFGVSIHGYVSKLGFDKENVMLWTAVMDLYGKCCKVGLARRVFDEMSVKNSMSWNT 3
             G SIH YV KLG D  NVM+ TA++D+Y KC KV LAR +FD++ VKNS+SWNT
Sbjct: 113 SIGPSIHAYVRKLGLDTCNVMVGTALVDMYAKCGKVQLARLIFDDLKVKNSVSWNT 168



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 37/109 (33%), Positives = 64/109 (58%)
 Frame = -1

Query: 329 VSWTSSITHYCKKGMLSEAASEFTRMRLAGNEPNDITFVTLLSGCAHFPSKCHLFGVSIH 150
           +SWT  I  + KKG   +A   F  M+++  EP+ +T + +LS CA+  +     G+ IH
Sbjct: 195 ISWTVFIDGFIKKGHFEQALEWFREMQVSKVEPDYVTIIAVLSACANLGALG--LGLWIH 252

Query: 149 GYVSKLGFDKENVMLWTAVMDLYGKCCKVGLARRVFDEMSVKNSMSWNT 3
            YV +  F + NV +  +++D+Y +C  + LAR+VF +M  +  +SWN+
Sbjct: 253 RYVLEKEF-RNNVRIGNSLIDMYSRCGCIELARQVFHKMLKRTLVSWNS 300