BLASTX nr result

ID: Coptis21_contig00034564 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00034564
         (306 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002337931.1| predicted protein [Populus trichocarpa] gi|2...    60   2e-07
ref|XP_002323795.1| predicted protein [Populus trichocarpa] gi|2...    60   2e-07
ref|XP_002521466.1| F-box/LRR-repeat protein, putative [Ricinus ...    57   2e-06

>ref|XP_002337931.1| predicted protein [Populus trichocarpa] gi|222870027|gb|EEF07158.1|
           predicted protein [Populus trichocarpa]
          Length = 120

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 26/47 (55%), Positives = 36/47 (76%)
 Frame = +2

Query: 2   HCSTIGDEGVEVFILNSKRLRQIQVEESKVTDTAKQWGSEKFIEMVT 142
           HC  IG E VE+F+LNS +LR +QVEE+KV+D A+ W S K I++V+
Sbjct: 74  HCDGIGAEAVELFVLNSPQLRGLQVEENKVSDVARSWASHKLIQIVS 120


>ref|XP_002323795.1| predicted protein [Populus trichocarpa] gi|222866797|gb|EEF03928.1|
           predicted protein [Populus trichocarpa]
          Length = 484

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 26/47 (55%), Positives = 36/47 (76%)
 Frame = +2

Query: 2   HCSTIGDEGVEVFILNSKRLRQIQVEESKVTDTAKQWGSEKFIEMVT 142
           HC  IG E VE+F+LNS +LR +QVEE+KV+D A+ W S K I++V+
Sbjct: 438 HCDGIGAEAVELFVLNSPQLRGLQVEENKVSDVARSWASHKLIQIVS 484


>ref|XP_002521466.1| F-box/LRR-repeat protein, putative [Ricinus communis]
           gi|223539365|gb|EEF40956.1| F-box/LRR-repeat protein,
           putative [Ricinus communis]
          Length = 484

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 25/46 (54%), Positives = 33/46 (71%)
 Frame = +2

Query: 2   HCSTIGDEGVEVFILNSKRLRQIQVEESKVTDTAKQWGSEKFIEMV 139
           HC  I  E +E+F LNS RLR +QVEESK++D A++W    FIE+V
Sbjct: 438 HCCGIEAEAIELFFLNSPRLRCVQVEESKLSDVARKWAEHNFIEVV 483


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