BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00034518
         (422 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI35029.3| unnamed protein product [Vitis vinifera]              172   3e-41
ref|XP_002276684.1| PREDICTED: putative pentatricopeptide repeat...   172   3e-41
ref|NP_189505.2| pentatricopeptide repeat-containing protein [Ar...   154   7e-36
ref|NP_189507.2| pentatricopeptide repeat-containing protein [Ar...   152   4e-35
ref|XP_002877120.1| pentatricopeptide repeat-containing protein ...   139   3e-31

>emb|CBI35029.3| unnamed protein product [Vitis vinifera]
          Length = 1596

 Score =  172 bits (435), Expect = 3e-41
 Identities = 79/138 (57%), Positives = 103/138 (74%)
 Frame = +3

Query: 3   RSTQPQVSLHYFYLMLKDDCIVPDYHTLPFVLIACANACWVSLGEGIHCWVLKNGWGFSD 182
           RS+ PQ++LHYF LML D+ + PD HT PF++ AC N+ W+ LG+ IH WVLKNG   SD
Sbjct: 81  RSSTPQLALHYFQLMLDDENVGPDQHTFPFIISACTNSLWMLLGKQIHNWVLKNGVASSD 140

Query: 183 KHIQTALLRFYLECSSLVEFRKVFDEIHERDVFQWNVFMNGCLRCGMDVEALSAFRDMLS 362
           +H+QTAL+RFY EC ++ + RK+FDEI   DV QWNV +NG +R G+  EAL+AFR+ML 
Sbjct: 141 RHVQTALVRFYAECCAMGDARKLFDEIPNLDVVQWNVLLNGYVRRGLAPEALNAFRNMLV 200

Query: 363 SGVELDEYCVATGLTACA 416
           SGVE DE+C+ T L  CA
Sbjct: 201 SGVEPDEFCLTTALKGCA 218



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
 Frame = +3

Query: 63  IVPDYHTLPFVLIACANACWVSLGEGIHCWVLKNGWGFSDKHIQTALLRFYLECSSLVEF 242
           + PD   L   L  CA    +  G+ IH +V K  W  +D  I TAL+  Y +C  +   
Sbjct: 203 VEPDEFCLTTALKGCAQLGALQQGKWIHEYVTKRKWLEADVFIGTALVDMYAKCGCIDRS 262

Query: 243 RKVFDEIHERDVFQWNVFMNGCLRCGMDVEALSAFRDM-LSSGVELDEYCVATGLTACAH 419
            +VF+ + +R+VF W+  + G    G   +A+     M +  G+  D   +   + ACAH
Sbjct: 263 VEVFEGMTKRNVFSWSAMIGGFALHGHVRKAMQCLERMQVEDGLRPDGVVLLGVIMACAH 322

Query: 420 S 422
           +
Sbjct: 323 A 323


>ref|XP_002276684.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g28640-like [Vitis vinifera]
          Length = 511

 Score =  172 bits (435), Expect = 3e-41
 Identities = 79/138 (57%), Positives = 103/138 (74%)
 Frame = +3

Query: 3   RSTQPQVSLHYFYLMLKDDCIVPDYHTLPFVLIACANACWVSLGEGIHCWVLKNGWGFSD 182
           RS+ PQ++LHYF LML D+ + PD HT PF++ AC N+ W+ LG+ IH WVLKNG   SD
Sbjct: 81  RSSTPQLALHYFQLMLDDENVGPDQHTFPFIISACTNSLWMLLGKQIHNWVLKNGVASSD 140

Query: 183 KHIQTALLRFYLECSSLVEFRKVFDEIHERDVFQWNVFMNGCLRCGMDVEALSAFRDMLS 362
           +H+QTAL+RFY EC ++ + RK+FDEI   DV QWNV +NG +R G+  EAL+AFR+ML 
Sbjct: 141 RHVQTALVRFYAECCAMGDARKLFDEIPNLDVVQWNVLLNGYVRRGLAPEALNAFRNMLV 200

Query: 363 SGVELDEYCVATGLTACA 416
           SGVE DE+C+ T L  CA
Sbjct: 201 SGVEPDEFCLTTALKGCA 218



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
 Frame = +3

Query: 63  IVPDYHTLPFVLIACANACWVSLGEGIHCWVLKNGWGFSDKHIQTALLRFYLECSSLVEF 242
           + PD   L   L  CA    +  G+ IH +V K  W  +D  I TAL+  Y +C  +   
Sbjct: 203 VEPDEFCLTTALKGCAQLGALQQGKWIHEYVTKRKWLEADVFIGTALVDMYAKCGCIDRS 262

Query: 243 RKVFDEIHERDVFQWNVFMNGCLRCGMDVEALSAFRDM-LSSGVELDEYCVATGLTACAH 419
            +VF+ + +R+VF W+  + G    G   +A+     M +  G+  D   +   + ACAH
Sbjct: 263 VEVFEGMTKRNVFSWSAMIGGFALHGHVRKAMQCLERMQVEDGLRPDGVVLLGVIMACAH 322

Query: 420 S 422
           +
Sbjct: 323 A 323


>ref|NP_189505.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75273576|sp|Q9LJJ1.1|PP259_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At3g28640 gi|9294278|dbj|BAB02180.1| unnamed
           protein product [Arabidopsis thaliana]
           gi|332643948|gb|AEE77469.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  154 bits (389), Expect = 7e-36
 Identities = 73/140 (52%), Positives = 98/140 (70%), Gaps = 2/140 (1%)
 Frame = +3

Query: 3   RSTQPQVSLHYFYLMLKDD--CIVPDYHTLPFVLIACANACWVSLGEGIHCWVLKNGWGF 176
           RS+QP + L YF LM+K++   I P Y T  F+++AC  AC+ S+G+ IHCWV+KNG   
Sbjct: 90  RSSQPHLGLRYFLLMVKEEEEDIAPSYLTFHFLIVACLKACFFSVGKQIHCWVVKNGVFL 149

Query: 177 SDKHIQTALLRFYLECSSLVEFRKVFDEIHERDVFQWNVFMNGCLRCGMDVEALSAFRDM 356
           SD H+QT +LR Y+E   L++ RKVFDEI + DV +W+V MNG +RCG+  E L  FR+M
Sbjct: 150 SDSHVQTGVLRIYVEDKLLLDARKVFDEIPQPDVVKWDVLMNGYVRCGLGSEGLEVFREM 209

Query: 357 LSSGVELDEYCVATGLTACA 416
           L  G+E DE+ V T LTACA
Sbjct: 210 LVKGLEPDEFSVTTALTACA 229



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
 Frame = +3

Query: 69  PDYHTLPFVLIACANACWVSLGEGIHCWVLKNGWGFSDKHIQTALLRFYLECSSLVEFRK 248
           PD  ++   L ACA    ++ G+ IH +V K  W  SD  + TAL+  Y +C  +    +
Sbjct: 216 PDEFSVTTALTACAQVGALAQGKWIHEFVKKKSWIESDVFVGTALVDMYAKCGCIETAVE 275

Query: 249 VFDEIHERDVFQWNVFMNGCLRCGMDVEALSAFRDM-LSSGVELDEYCVATGLTACAH 419
           VF ++  R+VF W   + G    G   +A++    +    G++ D   +   L ACAH
Sbjct: 276 VFKKLTRRNVFSWAALIGGYAAYGYAKKAMTCLERLEREDGIKPDSVVLLGVLAACAH 333


>ref|NP_189507.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75273574|sp|Q9LJI9.1|PP260_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g28660 gi|9294280|dbj|BAB02182.1| unnamed protein
           product [Arabidopsis thaliana]
           gi|20259531|gb|AAM13885.1| unknown protein [Arabidopsis
           thaliana] gi|24030460|gb|AAN41382.1| unknown protein
           [Arabidopsis thaliana] gi|332643950|gb|AEE77471.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 504

 Score =  152 bits (383), Expect = 4e-35
 Identities = 72/140 (51%), Positives = 97/140 (69%), Gaps = 2/140 (1%)
 Frame = +3

Query: 3   RSTQPQVSLHYFYLMLKDD--CIVPDYHTLPFVLIACANACWVSLGEGIHCWVLKNGWGF 176
           RS+QP + L YF LM+K++   I P Y T  F+++AC  AC+ S+G+ IHCWV+KNG   
Sbjct: 90  RSSQPHLGLRYFLLMVKEEEEDITPSYLTFHFLIVACLKACFFSVGKQIHCWVVKNGVFL 149

Query: 177 SDKHIQTALLRFYLECSSLVEFRKVFDEIHERDVFQWNVFMNGCLRCGMDVEALSAFRDM 356
           SD H+QT +LR Y+E   L + RKVFDEI + DV +W+V MNG +RCG+  E L  F++M
Sbjct: 150 SDGHVQTGVLRIYVEDKLLFDARKVFDEIPQPDVVKWDVLMNGYVRCGLGSEGLEVFKEM 209

Query: 357 LSSGVELDEYCVATGLTACA 416
           L  G+E DE+ V T LTACA
Sbjct: 210 LVRGIEPDEFSVTTALTACA 229



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
 Frame = +3

Query: 63  IVPDYHTLPFVLIACANACWVSLGEGIHCWVLKNGWGFSDKHIQTALLRFYLECSSLVEF 242
           I PD  ++   L ACA    ++ G+ IH +V K  W  SD  + TAL+  Y +C  +   
Sbjct: 214 IEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKRWIESDVFVGTALVDMYAKCGCIETA 273

Query: 243 RKVFDEIHERDVFQWNVFMNGCLRCGMDVEALSAF-RDMLSSGVELDEYCVATGLTACAH 419
            +VF+++  R+VF W   + G    G   +A +   R     G++ D   +   L ACAH
Sbjct: 274 VEVFEKLTRRNVFSWAALIGGYAAYGYAKKATTCLDRIEREDGIKPDSVVLLGVLAACAH 333


>ref|XP_002877120.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297322958|gb|EFH53379.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 399

 Score =  139 bits (349), Expect = 3e-31
 Identities = 65/124 (52%), Positives = 86/124 (69%)
 Frame = +3

Query: 45  MLKDDCIVPDYHTLPFVLIACANACWVSLGEGIHCWVLKNGWGFSDKHIQTALLRFYLEC 224
           M+K++ I P Y T  F+++AC  AC  S+G+ IHCWV+KNG   SD H+QT +LR Y+E 
Sbjct: 1   MVKEEDIAPSYLTFYFLIVACFKACLFSVGKQIHCWVVKNGVFLSDGHVQTGILRIYVED 60

Query: 225 SSLVEFRKVFDEIHERDVFQWNVFMNGCLRCGMDVEALSAFRDMLSSGVELDEYCVATGL 404
             L++  KVFDEI + DV +W+V MNG +RCG+  E L  FR+ML  GVE DE+ V T L
Sbjct: 61  KVLLDAHKVFDEIPKPDVVKWDVLMNGYVRCGLGSEGLEVFREMLVRGVEPDEFSVTTAL 120

Query: 405 TACA 416
           TACA
Sbjct: 121 TACA 124



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
 Frame = +3

Query: 63  IVPDYHTLPFVLIACANACWVSLGEGIHCWVLKNGWGFSDKHIQTALLRFYLECSSLVEF 242
           + PD  ++   L ACA    ++ G+ IH +V K  W  SD  + TAL+  Y +C  +   
Sbjct: 109 VEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKRWIESDVFVGTALVDMYAKCGCIEMA 168

Query: 243 RKVFDEIHERDVFQWNVFMNGCLRCGMDVEALSAFRDM-LSSGVELDEYCVATGLTACAH 419
            +VF+++  R+VF W   + G    G   +A++    M    G++ D   +   L ACAH
Sbjct: 169 VEVFEKLSRRNVFSWAALIGGYAAYGYAKKAMTCLDRMEREDGIKPDSVVLLGVLAACAH 228