BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00033901
         (269 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containi...   115   5e-24
emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]   115   5e-24
ref|XP_002883344.1| pentatricopeptide repeat-containing protein ...   113   1e-23
ref|NP_188854.1| pentatricopeptide repeat-containing protein [Ar...   111   5e-23
ref|XP_002308773.1| predicted protein [Populus trichocarpa] gi|2...   104   9e-21

>ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  115 bits (287), Expect = 5e-24
 Identities = 58/87 (66%), Positives = 67/87 (77%), Gaps = 2/87 (2%)
 Frame = +1

Query: 7   STLLWNTIIIGFICNGMPHDALRFYARMVTAN--KSDSYTYSSLLKACADTRQLKLGKIM 180
           +T+LWNTIIIGFICN MP DAL FYARM  +   K DSYT+SS LKACA  R LKLGK +
Sbjct: 67  TTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACAQARSLKLGKAL 126

Query: 181 HCRLLRSHSKLTTIVGNSLLNMYTSCL 261
           HC +LRSH   + IV NSLLNMY++CL
Sbjct: 127 HCHVLRSHFGSSRIVYNSLLNMYSTCL 153


>emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  115 bits (287), Expect = 5e-24
 Identities = 58/87 (66%), Positives = 67/87 (77%), Gaps = 2/87 (2%)
 Frame = +1

Query: 7   STLLWNTIIIGFICNGMPHDALRFYARMVTAN--KSDSYTYSSLLKACADTRQLKLGKIM 180
           +T+LWNTIIIGFICN MP DAL FYARM  +   K DSYT+SS LKACA  R LKLGK +
Sbjct: 67  TTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACAQARSLKLGKAL 126

Query: 181 HCRLLRSHSKLTTIVGNSLLNMYTSCL 261
           HC +LRSH   + IV NSLLNMY++CL
Sbjct: 127 HCHVLRSHFGSSRIVYNSLLNMYSTCL 153


>ref|XP_002883344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297329184|gb|EFH59603.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 824

 Score =  113 bits (283), Expect = 1e-23
 Identities = 53/89 (59%), Positives = 66/89 (74%), Gaps = 3/89 (3%)
 Frame = +1

Query: 7   STLLWNTIIIGFICNGMPHDALRFYARMVTA---NKSDSYTYSSLLKACADTRQLKLGKI 177
           +T+LWNTIIIGFICN +PH+AL FY+RM       K D+YTYSS LKACA+T+ LK GK 
Sbjct: 69  TTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTKCDAYTYSSTLKACAETKNLKAGKA 128

Query: 178 MHCRLLRSHSKLTTIVGNSLLNMYTSCLN 264
           +HC L+R     + +V NSL+NMY SCLN
Sbjct: 129 VHCHLIRCLQNSSRVVHNSLMNMYVSCLN 157


>ref|NP_188854.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75273371|sp|Q9LIE7.1|PP246_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g22150, chloroplastic; Flags: Precursor
           gi|11994734|dbj|BAB03063.1| selenium-binding
           protein-like [Arabidopsis thaliana]
           gi|110739449|dbj|BAF01634.1| hypothetical protein
           [Arabidopsis thaliana] gi|332643073|gb|AEE76594.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 820

 Score =  111 bits (278), Expect = 5e-23
 Identities = 52/89 (58%), Positives = 65/89 (73%), Gaps = 3/89 (3%)
 Frame = +1

Query: 7   STLLWNTIIIGFICNGMPHDALRFYARMVTA---NKSDSYTYSSLLKACADTRQLKLGKI 177
           +T+LWNTIIIGFICN +PH+AL FY+RM         D+YTYSS LKACA+T+ LK GK 
Sbjct: 69  TTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTNCDAYTYSSTLKACAETKNLKAGKA 128

Query: 178 MHCRLLRSHSKLTTIVGNSLLNMYTSCLN 264
           +HC L+R     + +V NSL+NMY SCLN
Sbjct: 129 VHCHLIRCLQNSSRVVHNSLMNMYVSCLN 157


>ref|XP_002308773.1| predicted protein [Populus trichocarpa] gi|222854749|gb|EEE92296.1|
           predicted protein [Populus trichocarpa]
          Length = 465

 Score =  104 bits (259), Expect = 9e-21
 Identities = 50/89 (56%), Positives = 70/89 (78%), Gaps = 3/89 (3%)
 Frame = +1

Query: 7   STLLWNTIIIGFICNGMPHDALRFYARMVTAN---KSDSYTYSSLLKACADTRQLKLGKI 177
           +T++ NTIIIGFICN +P +A+ FY+++ +++   K DSYTYSS LKACA+TR LK+G+ 
Sbjct: 72  TTVICNTIIIGFICNNLPLEAILFYSKLKSSSLGTKFDSYTYSSTLKACAETRSLKIGRA 131

Query: 178 MHCRLLRSHSKLTTIVGNSLLNMYTSCLN 264
           +HC L+R  S  + IV NSLLNMY+SCL+
Sbjct: 132 IHCHLIRCLSNPSRIVYNSLLNMYSSCLS 160