BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00033639
         (326 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containi...   139   3e-31
ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containi...   129   2e-28
ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containi...   127   7e-28
emb|CBI15662.3| unnamed protein product [Vitis vinifera]              126   2e-27
ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containi...   126   2e-27

>ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
           gi|449517215|ref|XP_004165641.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  139 bits (349), Expect = 3e-31
 Identities = 67/97 (69%), Positives = 81/97 (83%)
 Frame = -2

Query: 292 SHVRKSTSGLCNEIENLVRFRKYGDALELFEIVECEGDDYDVGVSTFDALVNACIELKSI 113
           +HV+KS+ G+C++IE LV  +KY DALE+FEI E E D + VG ST+DAL+NACI LKSI
Sbjct: 90  THVKKSSVGICSQIEKLVLCKKYRDALEMFEIFELE-DGFHVGYSTYDALINACIGLKSI 148

Query: 112 RGVKRLYSYMIKTGFEPDQYMHNRVLLMHVKCGMMMD 2
           RGVKRL +YM+  GFEPDQYM NRVLLMHVKCGMM+D
Sbjct: 149 RGVKRLCNYMVDNGFEPDQYMRNRVLLMHVKCGMMID 185


>ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 691

 Score =  129 bits (324), Expect = 2e-28
 Identities = 64/114 (56%), Positives = 87/114 (76%), Gaps = 6/114 (5%)
 Frame = -2

Query: 325 PKPTQNIEKQV-----SHVRK-STSGLCNEIENLVRFRKYGDALELFEIVECEGDDYDVG 164
           PK  + +E+ V     + +RK S SGLC++IE LV   ++ +A+ELFEI+E E D Y VG
Sbjct: 58  PKKVEYMERNVPVLEDTQIRKTSPSGLCSQIEKLVVCNRHREAMELFEILELEHDGYGVG 117

Query: 163 VSTFDALVNACIELKSIRGVKRLYSYMIKTGFEPDQYMHNRVLLMHVKCGMMMD 2
            ST+DALV+AC+ L+SIRGVKR+++YMI +GFEPD Y+ NRVL MHVKCG+M+D
Sbjct: 118 ASTYDALVSACVGLRSIRGVKRVFNYMINSGFEPDLYVMNRVLFMHVKCGLMLD 171


>ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  127 bits (320), Expect = 7e-28
 Identities = 63/114 (55%), Positives = 88/114 (77%), Gaps = 6/114 (5%)
 Frame = -2

Query: 325 PKPTQNIEKQVS-----HVRK-STSGLCNEIENLVRFRKYGDALELFEIVECEGDDYDVG 164
           PK  +  E++V+      +RK S+SGLC +IE LV   +Y +A+ELFEI+E E D +DVG
Sbjct: 57  PKKVEYRERKVAVLDDTQIRKTSSSGLCIQIEKLVLCNRYREAMELFEILELEHDGFDVG 116

Query: 163 VSTFDALVNACIELKSIRGVKRLYSYMIKTGFEPDQYMHNRVLLMHVKCGMMMD 2
            ST+DALV+AC+ L+SIRGVKR+++YM+ +GFEPD Y+ NRVL +HVKCG+M+D
Sbjct: 117 GSTYDALVSACVGLRSIRGVKRVFNYMVNSGFEPDLYVMNRVLFVHVKCGLMLD 170


>emb|CBI15662.3| unnamed protein product [Vitis vinifera]
          Length = 657

 Score =  126 bits (316), Expect = 2e-27
 Identities = 64/115 (55%), Positives = 87/115 (75%), Gaps = 7/115 (6%)
 Frame = -2

Query: 325 PKPTQ---NIEKQV----SHVRKSTSGLCNEIENLVRFRKYGDALELFEIVECEGDDYDV 167
           PKP+    N+ K+     + +RK +S LC +IE LV F++Y +ALELFEI+E  G  YD+
Sbjct: 71  PKPSTIELNVGKEAQVNETQLRKPSSELCGQIEKLVFFKRYHEALELFEILELNGA-YDM 129

Query: 166 GVSTFDALVNACIELKSIRGVKRLYSYMIKTGFEPDQYMHNRVLLMHVKCGMMMD 2
              T+DALV+ACI LKSIRGVK++++YMI +G +PD+Y+ NRVLLMHVKCGMM+D
Sbjct: 130 DSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMID 184


>ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  126 bits (316), Expect = 2e-27
 Identities = 64/115 (55%), Positives = 87/115 (75%), Gaps = 7/115 (6%)
 Frame = -2

Query: 325 PKPTQ---NIEKQV----SHVRKSTSGLCNEIENLVRFRKYGDALELFEIVECEGDDYDV 167
           PKP+    N+ K+     + +RK +S LC +IE LV F++Y +ALELFEI+E  G  YD+
Sbjct: 71  PKPSTIELNVGKEAQVNETQLRKPSSELCGQIEKLVFFKRYHEALELFEILELNGA-YDM 129

Query: 166 GVSTFDALVNACIELKSIRGVKRLYSYMIKTGFEPDQYMHNRVLLMHVKCGMMMD 2
              T+DALV+ACI LKSIRGVK++++YMI +G +PD+Y+ NRVLLMHVKCGMM+D
Sbjct: 130 DSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMID 184