BLASTX nr result
ID: Coptis21_contig00033638
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00033638 (592 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002267393.1| PREDICTED: mismatch repair endonuclease PMS2... 129 3e-28 emb|CAN75888.1| hypothetical protein VITISV_023640 [Vitis vinifera] 129 5e-28 emb|CBI36837.3| unnamed protein product [Vitis vinifera] 127 1e-27 ref|XP_002321013.1| predicted protein [Populus trichocarpa] gi|2... 103 2e-20 ref|XP_002523056.1| DNA mismatch repair protein pms2, putative [... 103 3e-20 >ref|XP_002267393.1| PREDICTED: mismatch repair endonuclease PMS2-like [Vitis vinifera] Length = 937 Score = 129 bits (325), Expect = 3e-28 Identities = 72/149 (48%), Positives = 95/149 (63%), Gaps = 5/149 (3%) Frame = +1 Query: 1 IMNFTVPTRSYDVNVTPDKRKIFFSDEGSIMQSLRGAIEKIYSPSQCSYSAKKLEEPKKE 180 IMNFTVPTR+YDVNVTPDKRKIFFSDEGSI+ SLR +EKIYSPS SYS + EEP +E Sbjct: 302 IMNFTVPTRAYDVNVTPDKRKIFFSDEGSILHSLREGLEKIYSPSLTSYSVNRFEEPTEE 361 Query: 181 NGSSDLCSYPKKLHTPLSSERHV-----DEEEESIGVEKQSEEEGPQGMVKKRLRDIHEG 345 +S+L ++ LSS + + D +EE+ E+ +E++ P MVK ++H Sbjct: 362 TDNSELNPPQTQI---LSSSKQLFPDGSDLQEEAHSEEQITEDQIPSKMVKSSTENMHAV 418 Query: 346 EGIVHKVDESPTGKDFSLKVHTTGNVDGF 432 + + H D+ KDFSL+VH D F Sbjct: 419 KEMDHSYDKDSIEKDFSLRVHGIKKADSF 447 >emb|CAN75888.1| hypothetical protein VITISV_023640 [Vitis vinifera] Length = 3804 Score = 129 bits (323), Expect = 5e-28 Identities = 72/148 (48%), Positives = 94/148 (63%), Gaps = 4/148 (2%) Frame = +1 Query: 1 IMNFTVPTRSYDVNVTPDKRKIFFSDEGSIMQSLRGAIEKIYSPSQCSYSAKKLEEPKKE 180 IMNFTVPTR+YDVNVTPDKRKIFFSDEGSI+ SLR +EKIYSPS SYS + EEP +E Sbjct: 3001 IMNFTVPTRAYDVNVTPDKRKIFFSDEGSILHSLREGLEKIYSPSLTSYSVNRFEEPTEE 3060 Query: 181 NGSSDLCSYPKKLHTPLSSER----HVDEEEESIGVEKQSEEEGPQGMVKKRLRDIHEGE 348 +S+L P + SS++ D +EE+ E+ +E++ P MVK ++H + Sbjct: 3061 TBNSEL--NPPQTQILXSSKQLFPDGSDLQEEAHSEEQITEDQIPSKMVKSSTENMHAVK 3118 Query: 349 GIVHKVDESPTGKDFSLKVHTTGNVDGF 432 + H D+ KDFSL+VH D F Sbjct: 3119 EMDHSYDKDSIEKDFSLRVHGIKKADSF 3146 >emb|CBI36837.3| unnamed protein product [Vitis vinifera] Length = 854 Score = 127 bits (320), Expect = 1e-27 Identities = 83/196 (42%), Positives = 115/196 (58%), Gaps = 12/196 (6%) Frame = +1 Query: 1 IMNFTVPTRSYDVNVTPDKRKIFFSDEGSIMQSLRGAIEKIYSPSQCSYSAKKLEEPKKE 180 IMNFTVPTR+YDVNVTPDKRKIFFSDEGSI+ SLR +EKIYSPS SYS + EEP +E Sbjct: 302 IMNFTVPTRAYDVNVTPDKRKIFFSDEGSILHSLREGLEKIYSPSLTSYSVNRFEEPTEE 361 Query: 181 NGSSDLCSYPKKLHTPLSSERHV-----DEEEESIGVEKQSEEEGPQGMVKKRLRDIHEG 345 +S+L ++ LSS + + D +EE+ E+ +E++ P MVK ++H Sbjct: 362 TDNSELNPPQTQI---LSSSKQLFPDGSDLQEEAHSEEQITEDQIPSKMVKSSTENMHAV 418 Query: 346 EGIVHKVDESPTGKDFSLKVH------TTGNVDGFFSYS-PNQLKTPTASGMKDNCARSP 504 + + H D+ KDFSL+VH + S S N KT ++G+ ++ P Sbjct: 419 KEMDHSYDKDSIEKDFSLRVHEMVLKKNNSEMHALVSRSFVNHQKTNDSAGIIES---EP 475 Query: 505 VHTIGKLDSSFRYTPN 552 +G +DS+F T N Sbjct: 476 SKFLG-VDSAFDATEN 490 >ref|XP_002321013.1| predicted protein [Populus trichocarpa] gi|222861786|gb|EEE99328.1| predicted protein [Populus trichocarpa] Length = 915 Score = 103 bits (258), Expect = 2e-20 Identities = 59/142 (41%), Positives = 81/142 (57%) Frame = +1 Query: 1 IMNFTVPTRSYDVNVTPDKRKIFFSDEGSIMQSLRGAIEKIYSPSQCSYSAKKLEEPKKE 180 IMNFT+PT + DVNVTPDKRKIFFSDE SI+ +LR +EK YS S YS K E K Sbjct: 298 IMNFTIPTTACDVNVTPDKRKIFFSDESSILLALREGLEKNYSSSNSCYSVNKFENHAKA 357 Query: 181 NGSSDLCSYPKKLHTPLSSERHVDEEEESIGVEKQSEEEGPQGMVKKRLRDIHEGEGIVH 360 SS LCS P++ LS + + +S + +E+ P V+ + + GE +H Sbjct: 358 ADSSQLCS-PREKSNMLSKQSSAN-GNDSEETQTDAEDSSPLMTVEVKSKPFQVGERSIH 415 Query: 361 KVDESPTGKDFSLKVHTTGNVD 426 ++E KDF+L++H D Sbjct: 416 DIEEKFMMKDFALRLHGIKKTD 437 >ref|XP_002523056.1| DNA mismatch repair protein pms2, putative [Ricinus communis] gi|223537618|gb|EEF39241.1| DNA mismatch repair protein pms2, putative [Ricinus communis] Length = 924 Score = 103 bits (256), Expect = 3e-20 Identities = 73/196 (37%), Positives = 98/196 (50%), Gaps = 1/196 (0%) Frame = +1 Query: 1 IMNFTVPTRSYDVNVTPDKRKIFFSDEGSIMQSLRGAIEKIYSPSQCSYSAKKLEEPKKE 180 IMNF VPTR+ DVNVTPDKRKIFFSDE SI+ +LR ++ IYSPS SYS K EE K Sbjct: 299 IMNFIVPTRACDVNVTPDKRKIFFSDETSILHALREGLQNIYSPSNASYSVNKFEERIKA 358 Query: 181 NGSSDLCS-YPKKLHTPLSSERHVDEEEESIGVEKQSEEEGPQGMVKKRLRDIHEGEGIV 357 +S CS + K L ++ EE + E S+ VK + + GE Sbjct: 359 ASNSQSCSPHEKSLVLSKQLSAVSNDAEEILVEEHTSDGSNLLQTVKMKSHPSNVGE--- 415 Query: 358 HKVDESPTGKDFSLKVHTTGNVDGFFSYSPNQLKTPTASGMKDNCARSPVHTIGKLDSSF 537 DE KDF+L+VH V F + + QL T + D SP + K + Sbjct: 416 -NRDEKRISKDFTLRVHDIPKVYSFPNSNNRQL-TTLHDTLTDQNTPSPSRVVAKNIAES 473 Query: 538 RYTPNRLKTSPPTATK 585 R + + ++ T +K Sbjct: 474 RGSNSSSRSVQSTISK 489