BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00033553
         (624 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containi...   132   7e-29
emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]   122   4e-26
ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containi...   122   5e-26
ref|XP_002886081.1| pentatricopeptide repeat-containing protein ...   113   3e-23
ref|NP_179280.1| pentatricopeptide repeat-containing protein [Ar...   113   3e-23

>ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
           gi|449529106|ref|XP_004171542.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  132 bits (331), Expect = 7e-29
 Identities = 75/177 (42%), Positives = 97/177 (54%), Gaps = 1/177 (0%)
 Frame = +3

Query: 96  SSPPLHLLTQHIPTLNPSLIPSIIHSXXXXXXXXXXXSFFKWCQLHLPNFXXXXXXXXXX 275
           + P L  L  +   L+PSLI SI  S           + FKW Q H+P+F          
Sbjct: 32  TKPSLSALAPYAAHLSPSLISSIFASKALSSHPSVLLNVFKWAQKHVPSFSSPPNNSLSS 91

Query: 276 XXXXXXXI-RYKKFEDTKSILICYILQDSNNCLLDYLLHPPRHFPAPSKSLLDTCISCYV 452
                  + R+  F D KS+LI +I  D  + L   +LHP R  P PSK LLDT I  YV
Sbjct: 92  LLTLLPSLFRHYMFSDAKSLLISFISSDRQHELHKLILHPTRDLPEPSKELLDTSIGAYV 151

Query: 453 HAKKPLLAVQIFKKMKRECKRMNFLTCVTLLNALVRYPFSSSVSLSKEIFEDSVKLG 623
              +P LA QIF KMKR   R N LTC TL+N+LVRYP SSS+ L++++ +DS+KLG
Sbjct: 152 QMDQPHLATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLG 208


>emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  122 bits (307), Expect = 4e-26
 Identities = 75/173 (43%), Positives = 94/173 (54%)
 Frame = +3

Query: 105 PLHLLTQHIPTLNPSLIPSIIHSXXXXXXXXXXXSFFKWCQLHLPNFXXXXXXXXXXXXX 284
           PL  L  +IP L P L+ SI+ S           SFFKW Q +LP F             
Sbjct: 37  PLQALNTYIPQLTPPLVLSILSSKTLISRPNILISFFKWAQTNLPTFPHNSLPSLLSLLP 96

Query: 285 XXXXIRYKKFEDTKSILICYILQDSNNCLLDYLLHPPRHFPAPSKSLLDTCISCYVHAKK 464
                 ++KF D KS+L+ +I  D  + L   +L       +PSK+LLDT I  YV + +
Sbjct: 97  SL--FSHRKFSDAKSLLLGFIATDRRHDLHLSILR----LTSPSKALLDTAIGAYVQSGQ 150

Query: 465 PLLAVQIFKKMKRECKRMNFLTCVTLLNALVRYPFSSSVSLSKEIFEDSVKLG 623
           P  A QIFKKMKR   R N LTC TLLN+LVRYP S SVS S+E F D++KLG
Sbjct: 151 PHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLG 203


>ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  122 bits (306), Expect = 5e-26
 Identities = 75/173 (43%), Positives = 94/173 (54%)
 Frame = +3

Query: 105 PLHLLTQHIPTLNPSLIPSIIHSXXXXXXXXXXXSFFKWCQLHLPNFXXXXXXXXXXXXX 284
           PL  L  +IP L P L+ SI+ S           SFFKW Q +LP F             
Sbjct: 37  PLQALNTYIPHLTPPLVLSILSSKTLISRPNILISFFKWAQTNLPTFPHNSLPSLLSLLP 96

Query: 285 XXXXIRYKKFEDTKSILICYILQDSNNCLLDYLLHPPRHFPAPSKSLLDTCISCYVHAKK 464
                 ++KF D KS+L+ +I  D  + L   +L       +PSK+LLDT I  YV + +
Sbjct: 97  SL--FSHRKFSDAKSLLLGFIATDRRHDLHLSILR----LTSPSKALLDTAIGAYVQSGQ 150

Query: 465 PLLAVQIFKKMKRECKRMNFLTCVTLLNALVRYPFSSSVSLSKEIFEDSVKLG 623
           P  A QIFKKMKR   R N LTC TLLN+LVRYP S SVS S+E F D++KLG
Sbjct: 151 PHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLG 203


>ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297331921|gb|EFH62340.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 743

 Score =  113 bits (282), Expect = 3e-23
 Identities = 66/174 (37%), Positives = 95/174 (54%), Gaps = 2/174 (1%)
 Frame = +3

Query: 108 LHLLTQHIPTLNPSLIPSIIHSXXXXXXXXXXXSFFKWCQLHLPNFXXXXXXXXXXXXXX 287
           L  L  +IP +   L+ S++ S           SFF+W Q  +P                
Sbjct: 27  LETLNPYIPQITQPLLSSLLSSPSLAKKPETLVSFFQWAQSSIPE-AFPSDSPLPLLSVV 85

Query: 288 XXXIRYKKFEDTKSILICYI-LQDSNNCLLDYLLHPPRHF-PAPSKSLLDTCISCYVHAK 461
              + + KF D KS+L+ YI   D++  L + LLHP  H  P PSK+L D  +S Y+HA 
Sbjct: 86  RSLLSHHKFADAKSLLVSYIRTSDASLSLCNSLLHPNLHLSPPPSKALFDIALSAYLHAG 145

Query: 462 KPLLAVQIFKKMKRECKRMNFLTCVTLLNALVRYPFSSSVSLSKEIFEDSVKLG 623
           KP +A+Q+F+KM R   + N LTC TLL  LVRYP S S++ ++E+F+D VK+G
Sbjct: 146 KPHVALQVFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSIASAREVFDDMVKIG 199


>ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g16880 gi|3757517|gb|AAC64219.1| putative
           salt-inducible protein [Arabidopsis thaliana]
           gi|18175643|gb|AAL59902.1| putative salt-inducible
           protein [Arabidopsis thaliana]
           gi|20465657|gb|AAM20297.1| putative salt-inducible
           protein [Arabidopsis thaliana]
           gi|330251452|gb|AEC06546.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  113 bits (282), Expect = 3e-23
 Identities = 67/174 (38%), Positives = 94/174 (54%), Gaps = 2/174 (1%)
 Frame = +3

Query: 108 LHLLTQHIPTLNPSLIPSIIHSXXXXXXXXXXXSFFKWCQLHLPNFXXXXXXXXXXXXXX 287
           L  L  +IP +   L+ S++ S           SFF+W Q  +P                
Sbjct: 27  LETLNPYIPQITQPLLTSLLSSPSLAKKPETLVSFFQWAQTSIPE-AFPSDSPLPLISVV 85

Query: 288 XXXIRYKKFEDTKSILICYI-LQDSNNCLLDYLLHPPRHF-PAPSKSLLDTCISCYVHAK 461
              + + KF D KS+L+ YI   D++  L + LLHP  H  P PSK+L D  +S Y+H  
Sbjct: 86  RSLLSHHKFADAKSLLVSYIRTSDASLSLCNSLLHPNLHLSPPPSKALFDIALSAYLHEG 145

Query: 462 KPLLAVQIFKKMKRECKRMNFLTCVTLLNALVRYPFSSSVSLSKEIFEDSVKLG 623
           KP +A+QIF+KM R   + N LTC TLL  LVRYP S S+S ++E+F+D VK+G
Sbjct: 146 KPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSAREVFDDMVKIG 199