BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00033538
         (396 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containi...   120   1e-25
ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containi...   106   2e-21
ref|XP_002320827.1| predicted protein [Populus trichocarpa] gi|2...   101   5e-20
ref|XP_002511922.1| pentatricopeptide repeat-containing protein,...    99   5e-19
ref|XP_002878387.1| pentatricopeptide repeat-containing protein ...    89   4e-16

>ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
           gi|297745328|emb|CBI40408.3| unnamed protein product
           [Vitis vinifera]
          Length = 765

 Score =  120 bits (301), Expect = 1e-25
 Identities = 61/131 (46%), Positives = 85/131 (64%)
 Frame = +2

Query: 2   HLCNTFLDFLLRAGRGVDGRKVLDEMLESGSTFPPNDLTGFMFFDGLARRGNFVVAVKWD 181
           H+ N  +D L R GR  D   +LDEML+  + FPPN  TG + F  L++R     AV  +
Sbjct: 193 HIRNILIDVLFRKGRVDDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVDEE 252

Query: 182 EVIGLVTKFGEHGVFPDALVLRKLITRLGRSGNVGHAWDLLHVLMKMSAPLEASCFNALL 361
           E++GLV+KF EH VFP+++ L +LI+RL RSG    AWD+LH LMK+   +EA+  NALL
Sbjct: 253 EIVGLVSKFAEHEVFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALL 312

Query: 362 TGLGLESQFEK 394
           T LG   +F++
Sbjct: 313 TALGRAREFKR 323


>ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
           gi|449475521|ref|XP_004154479.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
          Length = 660

 Score =  106 bits (264), Expect = 2e-21
 Identities = 57/128 (44%), Positives = 80/128 (62%)
 Frame = +2

Query: 11  NTFLDFLLRAGRGVDGRKVLDEMLESGSTFPPNDLTGFMFFDGLARRGNFVVAVKWDEVI 190
           N  ++ LL++GR  +   VLDEML   S F PND T  + F+ L +       VK DE+ 
Sbjct: 43  NEIINLLLKSGRVDNAMNVLDEMLLPESEFRPNDKTAGIVFNNLLKIDGLEGRVKEDEIA 102

Query: 191 GLVTKFGEHGVFPDALVLRKLITRLGRSGNVGHAWDLLHVLMKMSAPLEASCFNALLTGL 370
           GLV+KFG+H +FPD + L +LI++L RSGN   AW++L  LM ++   +A+  NALLTGL
Sbjct: 103 GLVSKFGKHNIFPDTIALTQLISKLCRSGNTNLAWNILDNLMMLNGLKDAAPCNALLTGL 162

Query: 371 GLESQFEK 394
           G   +F K
Sbjct: 163 GKAREFGK 170


>ref|XP_002320827.1| predicted protein [Populus trichocarpa] gi|222861600|gb|EEE99142.1|
           predicted protein [Populus trichocarpa]
          Length = 775

 Score =  101 bits (252), Expect = 5e-20
 Identities = 57/133 (42%), Positives = 77/133 (57%), Gaps = 2/133 (1%)
 Frame = +2

Query: 2   HLCNTFLDFLLRAGRGVDGRKVLDEMLESG--STFPPNDLTGFMFFDGLARRGNFVVAVK 175
           +L N +L  LLR+GR  D  KV+DEM ES   S   PND TG + F  L +R      + 
Sbjct: 191 YLRNVWLSILLRSGRVKDALKVIDEMFESNDDSNCRPNDATGDILFSFLLKRERNEELLS 250

Query: 176 WDEVIGLVTKFGEHGVFPDALVLRKLITRLGRSGNVGHAWDLLHVLMKMSAPLEASCFNA 355
            DE++ LV KFGEHGV   +  + +LITRL R+      WDL   ++K+ A LE++  N+
Sbjct: 251 EDEIVNLVLKFGEHGVLISSFWMGRLITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNS 310

Query: 356 LLTGLGLESQFEK 394
           LLTGL  E  F +
Sbjct: 311 LLTGLAREGNFNR 323


>ref|XP_002511922.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223549102|gb|EEF50591.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 346

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 58/133 (43%), Positives = 83/133 (62%), Gaps = 2/133 (1%)
 Frame = +2

Query: 2   HLCNTFLDFLLRAGRGVDGRKVLDEMLESGSTFP--PNDLTGFMFFDGLARRGNFVVAVK 175
           H+ N  +D LLR GR  D  KVLDEML+ GS F   P+D+TG + F  L +R   V    
Sbjct: 198 HVRNLMVDLLLRDGRVDDAFKVLDEMLQPGSEFDLRPDDVTGDIIFTWLMKREKLVSP-- 255

Query: 176 WDEVIGLVTKFGEHGVFPDALVLRKLITRLGRSGNVGHAWDLLHVLMKMSAPLEASCFNA 355
            +E++ +V K G+  VFP+++ L + I +L R+GN   A+DLL  LM + A ++A+  NA
Sbjct: 256 -EEIVEVVLKLGKFDVFPNSIRLTQTIGQLCRTGNTSKAYDLLIELMTLGAAIKAAPCNA 314

Query: 356 LLTGLGLESQFEK 394
           LLTGLG +  F+K
Sbjct: 315 LLTGLGRDGDFDK 327


>ref|XP_002878387.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297324225|gb|EFH54646.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 766

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 52/121 (42%), Positives = 72/121 (59%)
 Frame = +2

Query: 11  NTFLDFLLRAGRGVDGRKVLDEMLESGSTFPPNDLTGFMFFDGLARRGNFVVAVKWDEVI 190
           N  +D LLR G   D  KVLDEML+  S FPPN +T  +    + + G  +   K   +I
Sbjct: 189 NVVIDVLLRNGLVDDAFKVLDEMLQKESVFPPNRITADIVLHEVWK-GRLLTEEK---II 244

Query: 191 GLVTKFGEHGVFPDALVLRKLITRLGRSGNVGHAWDLLHVLMKMSAPLEASCFNALLTGL 370
           GL+++F  HGV P+++ L + I+ L ++     AWD+L  LMK  APLEA  FNALL+ L
Sbjct: 245 GLISRFSSHGVSPNSVWLTRFISSLCKNARTNAAWDILSDLMKNKAPLEAPPFNALLSCL 304

Query: 371 G 373
           G
Sbjct: 305 G 305