BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00033530
         (529 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]               69   1e-14
emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]    53   1e-10
gb|ABA94310.1| retrotransposon protein, putative, Ty3-gypsy subc...    64   1e-10
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...    57   2e-10
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...    61   4e-10

>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score = 69.3 bits (168), Expect(3) = 1e-14
 Identities = 36/63 (57%), Positives = 41/63 (65%)
 Frame = -3

Query: 377  TKHLEVDYHYVRELVTNKLLTIKYVCTVDQLADVFTKGLSTNRFHDLIHKLNYSERFSLK 198
            TKH+EVDYHYVR+ V  + L + YV T DQ AD+FTKGLST RF  L  KL    R  L 
Sbjct: 1313 TKHIEVDYHYVRDKVVRQELAVSYVSTADQTADIFTKGLSTQRFQFLASKLPVRAR-PLS 1371

Query: 197  LEG 189
            L G
Sbjct: 1372 LRG 1374



 Score = 29.3 bits (64), Expect(3) = 1e-14
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 414  WCDNISAISLSNNQALRS 361
            WCDNIS+ISL++N    S
Sbjct: 1294 WCDNISSISLASNPVFHS 1311



 Score = 25.4 bits (54), Expect(3) = 1e-14
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -1

Query: 526  TVARSSTESEYRSLA 482
            TV+RSS E+EYR LA
Sbjct: 1254 TVSRSSAEAEYRQLA 1268


>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
          Length = 1262

 Score = 52.8 bits (125), Expect(3) = 1e-10
 Identities = 30/64 (46%), Positives = 40/64 (62%)
 Frame = -3

Query: 377  TKHLEVDYHYVRELVTNKLLTIKYVCTVDQLADVFTKGLSTNRFHDLIHKLNYSERFSLK 198
            TKH+E+D ++VRE V  + L + +V T DQ+ADVFTK LS   F  L  KL  +   SL 
Sbjct: 1201 TKHMELDLYFVREKVMERKLVVNHVPTEDQVADVFTKPLSFRFFDKLREKLTVA---SLD 1257

Query: 197  LEGG 186
            L+ G
Sbjct: 1258 LKNG 1261



 Score = 30.0 bits (66), Expect(3) = 1e-10
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -2

Query: 414  WCDNISAISLSNNQALRS 361
            WCDNIS +SLS N  L S
Sbjct: 1182 WCDNISTVSLSANPVLHS 1199



 Score = 27.3 bits (59), Expect(3) = 1e-10
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = -1

Query: 526  TVARSSTESEYRSLA 482
            T +RSSTE+EYRSLA
Sbjct: 1141 TTSRSSTEAEYRSLA 1155


>gb|ABA94310.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1762

 Score = 63.9 bits (154), Expect(2) = 1e-10
 Identities = 27/55 (49%), Positives = 40/55 (72%)
 Frame = -3

Query: 377  TKHLEVDYHYVRELVTNKLLTIKYVCTVDQLADVFTKGLSTNRFHDLIHKLNYSE 213
            TKH+E+DYH+V+E V NK+L I+++ T DQ+AD FTK LST      ++ LN ++
Sbjct: 1707 TKHIEIDYHFVQERVANKMLDIRFIGTKDQIADGFTKALSTQNLRHFMYNLNLAK 1761



 Score = 26.6 bits (57), Expect(2) = 1e-10
 Identities = 11/21 (52%), Positives = 18/21 (85%)
 Frame = -1

Query: 526  TVARSSTESEYRSLA*ALLDM 464
            TV+RSSTE+EY+++A A  ++
Sbjct: 1647 TVSRSSTEAEYKAMANATAEL 1667


>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
          Length = 1313

 Score = 57.4 bits (137), Expect(3) = 2e-10
 Identities = 29/52 (55%), Positives = 35/52 (67%)
 Frame = -3

Query: 377  TKHLEVDYHYVRELVTNKLLTIKYVCTVDQLADVFTKGLSTNRFHDLIHKLN 222
            TKH+EVDYH+VR+ V  KLL I+YV T DQ+AD FTK LS     +    LN
Sbjct: 1258 TKHIEVDYHFVRDRVAKKLLDIEYVPTGDQVADGFTKPLSVRLLENFKVNLN 1309



 Score = 28.5 bits (62), Expect(3) = 2e-10
 Identities = 13/21 (61%), Positives = 18/21 (85%)
 Frame = -1

Query: 526  TVARSSTESEYRSLA*ALLDM 464
            TV+RSSTESEY++LA A  ++
Sbjct: 1198 TVSRSSTESEYKALANATAEL 1218



 Score = 23.5 bits (49), Expect(3) = 2e-10
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -2

Query: 480  KLYWICIXXXXXXXXXXXXXXLWCDNISAISLSNN 376
            +L W+ I              LWCDN+ A  LS N
Sbjct: 1217 ELIWVQILLTEISIKSPRAAKLWCDNLGAKYLSAN 1251


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1447

 Score = 60.8 bits (146), Expect(2) = 4e-10
 Identities = 29/52 (55%), Positives = 36/52 (69%)
 Frame = -3

Query: 377  TKHLEVDYHYVRELVTNKLLTIKYVCTVDQLADVFTKGLSTNRFHDLIHKLN 222
            TKH+EVDYH+VRE V+ KLL I +V T DQ+AD FTK L   +  +  H LN
Sbjct: 1392 TKHIEVDYHFVRERVSQKLLEIDFVPTGDQVADGFTKALPVRQLENFKHNLN 1443



 Score = 28.1 bits (61), Expect(2) = 4e-10
 Identities = 13/21 (61%), Positives = 18/21 (85%)
 Frame = -1

Query: 526  TVARSSTESEYRSLA*ALLDM 464
            TV+RSSTESEY++LA A  ++
Sbjct: 1332 TVSRSSTESEYKALANATAEI 1352