BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00033358
         (291 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI29194.3| unnamed protein product [Vitis vinifera]              137   1e-30
ref|XP_002269121.1| PREDICTED: pentatricopeptide repeat-containi...   137   1e-30
sp|O49680.2|PP324_ARATH RecName: Full=Pentatricopeptide repeat-c...   124   6e-27
ref|NP_193657.1| pentatricopeptide repeat-containing protein [Ar...   124   6e-27
ref|XP_002867948.1| pentatricopeptide repeat-containing protein ...   121   7e-26

>emb|CBI29194.3| unnamed protein product [Vitis vinifera]
          Length = 862

 Score =  137 bits (344), Expect = 1e-30
 Identities = 60/94 (63%), Positives = 77/94 (81%)
 Frame = -2

Query: 290  VDMLGRSGKLGEAYEFIKDIQPQQQAGVWGALLSACKYHGDIKMGKQVAEHLFNIDPENA 111
            VDMLGR+G+LGEAYEFI+ +  Q + GVWGALLSAC YHGD+KMG++VAE LF ++PEN 
Sbjct: 743  VDMLGRAGRLGEAYEFIRQMPTQPEPGVWGALLSACSYHGDLKMGREVAELLFELEPENV 802

Query: 110  GYYVSLFNIYTADGRWSDAMDIRKNFQDRMLTKP 9
            GYY+SL N+Y A GRW DA+++R+  QD+ L KP
Sbjct: 803  GYYISLSNMYVAAGRWKDAVELRRIIQDKGLKKP 836


>ref|XP_002269121.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
            mitochondrial [Vitis vinifera]
          Length = 828

 Score =  137 bits (344), Expect = 1e-30
 Identities = 60/94 (63%), Positives = 77/94 (81%)
 Frame = -2

Query: 290  VDMLGRSGKLGEAYEFIKDIQPQQQAGVWGALLSACKYHGDIKMGKQVAEHLFNIDPENA 111
            VDMLGR+G+LGEAYEFI+ +  Q + GVWGALLSAC YHGD+KMG++VAE LF ++PEN 
Sbjct: 724  VDMLGRAGRLGEAYEFIRQMPTQPEPGVWGALLSACSYHGDLKMGREVAELLFELEPENV 783

Query: 110  GYYVSLFNIYTADGRWSDAMDIRKNFQDRMLTKP 9
            GYY+SL N+Y A GRW DA+++R+  QD+ L KP
Sbjct: 784  GYYISLSNMYVAAGRWKDAVELRRIIQDKGLKKP 817


>sp|O49680.2|PP324_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19220,
            mitochondrial; Flags: Precursor
          Length = 951

 Score =  124 bits (312), Expect = 6e-27
 Identities = 59/96 (61%), Positives = 71/96 (73%)
 Frame = -2

Query: 290  VDMLGRSGKLGEAYEFIKDIQPQQQAGVWGALLSACKYHGDIKMGKQVAEHLFNIDPENA 111
            VDMLGR+GKL EAYEFI  I   Q+AGVWGALLSAC YHGD K+GK+VAE LF ++P+NA
Sbjct: 843  VDMLGRAGKLREAYEFITGIGEPQKAGVWGALLSACNYHGDTKLGKEVAEVLFEMEPDNA 902

Query: 110  GYYVSLFNIYTADGRWSDAMDIRKNFQDRMLTKPPG 3
             YY+SL N Y   G W +A+ +RK  +D  L K PG
Sbjct: 903  SYYISLANTYVGLGGWEEAVRLRKMVEDNALKKLPG 938


>ref|NP_193657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|2828297|emb|CAA16711.1| putative protein [Arabidopsis
            thaliana] gi|7268717|emb|CAB78924.1| putative protein
            [Arabidopsis thaliana] gi|332658761|gb|AEE84161.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 932

 Score =  124 bits (312), Expect = 6e-27
 Identities = 59/96 (61%), Positives = 71/96 (73%)
 Frame = -2

Query: 290  VDMLGRSGKLGEAYEFIKDIQPQQQAGVWGALLSACKYHGDIKMGKQVAEHLFNIDPENA 111
            VDMLGR+GKL EAYEFI  I   Q+AGVWGALLSAC YHGD K+GK+VAE LF ++P+NA
Sbjct: 824  VDMLGRAGKLREAYEFITGIGEPQKAGVWGALLSACNYHGDTKLGKEVAEVLFEMEPDNA 883

Query: 110  GYYVSLFNIYTADGRWSDAMDIRKNFQDRMLTKPPG 3
             YY+SL N Y   G W +A+ +RK  +D  L K PG
Sbjct: 884  SYYISLANTYVGLGGWEEAVRLRKMVEDNALKKLPG 919


>ref|XP_002867948.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297313784|gb|EFH44207.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 919

 Score =  121 bits (303), Expect = 7e-26
 Identities = 58/96 (60%), Positives = 70/96 (72%)
 Frame = -2

Query: 290  VDMLGRSGKLGEAYEFIKDIQPQQQAGVWGALLSACKYHGDIKMGKQVAEHLFNIDPENA 111
            VDMLGR+GKL EAYEFI  I   Q+AGVWGALLSAC YHGD K+G +VAE LF ++P+NA
Sbjct: 815  VDMLGRAGKLKEAYEFIIGIGEPQKAGVWGALLSACNYHGDTKLGTEVAEVLFEMEPDNA 874

Query: 110  GYYVSLFNIYTADGRWSDAMDIRKNFQDRMLTKPPG 3
             YY+SL N Y   G W +A+ +RK  +D  L K PG
Sbjct: 875  SYYISLANTYVGLGGWDEAVRLRKIVEDNALKKLPG 910