BLASTX nr result
ID: Coptis21_contig00033048
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00033048
(378 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containi... 138 4e-31
ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group] g... 133 2e-29
emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group] 133 2e-29
ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containi... 131 5e-29
emb|CBI40338.3| unnamed protein product [Vitis vinifera] 131 5e-29
>ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
gi|449479088|ref|XP_004155501.1| PREDICTED:
pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
Length = 855
Score = 138 bits (348), Expect = 4e-31
Identities = 62/122 (50%), Positives = 84/122 (68%)
Frame = -2
Query: 374 NAVCCWNQIIKADVCNGYQGDAFNLYCLMLSLNWKPDGFTYPFVLKACGEIQCVWRGVLV 195
+ V WN +I+ V G D YC M L W PD +T+PFVLKACGEI + G V
Sbjct: 90 STVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASV 149
Query: 194 HSVVCRSGYESNVFVCNALVAMYARCGQLDEAVKVFDEVSQRGISNVVSWNSIVGAFVRS 15
H++VC +G SNVF+CN++VAMY RCG LD+A ++FDEV +R I ++VSWNSI+ A+V+
Sbjct: 150 HAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQG 209
Query: 14 GE 9
G+
Sbjct: 210 GQ 211
Score = 77.4 bits (189), Expect = 1e-12
Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Frame = -2
Query: 368 VCCWNQIIKADVCNGYQGDAFNLYCLM---LSLNWKPDGFTYPFVLKACGEIQCVWRGVL 198
+ WN I+ A V G A + M SL +PD T +L AC + + G
Sbjct: 196 IVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQ 255
Query: 197 VHSVVCRSGYESNVFVCNALVAMYARCGQLDEAVKVFDEVSQRGISNVVSWNSIVGAFVR 18
VH R+G +VFV NALV+MYA+C +++EA KVF+ + ++ +VVSWN++V + +
Sbjct: 256 VHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKK---DVVSWNAMVTGYSQ 312
Query: 17 SG 12
G
Sbjct: 313 IG 314
Score = 58.2 bits (139), Expect = 7e-07
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Frame = -2
Query: 368 VCCWNQIIKADVCNGYQGDAFNLYCLMLS--LNWKPDGFTYPFVLKACGEIQCVWRGVLV 195
V W +I +G DA L+ + + KP+ FT L AC + + G +
Sbjct: 445 VVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQL 504
Query: 194 HSVVCRSGYESNV-FVCNALVAMYARCGQLDEAVKVFDEVSQRGISNVVSWNSIVGAFVR 18
H+ R+ ES V +V N L+ MY++ G +D A VFD + R NVVSW S++ +
Sbjct: 505 HAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLR---NVVSWTSLMTGYGM 561
Query: 17 SG 12
G
Sbjct: 562 HG 563
>ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
gi|113563830|dbj|BAF14173.1| Os04g0218100, partial
[Oryza sativa Japonica Group]
Length = 890
Score = 133 bits (334), Expect = 2e-29
Identities = 61/115 (53%), Positives = 80/115 (69%)
Frame = -2
Query: 359 WNQIIKADVCNGYQGDAFNLYCLMLSLNWKPDGFTYPFVLKACGEIQCVWRGVLVHSVVC 180
WN +I+ + G A N+ C ML +PD FT P VLKACGE+ G H ++C
Sbjct: 123 WNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLIC 182
Query: 179 RSGYESNVFVCNALVAMYARCGQLDEAVKVFDEVSQRGISNVVSWNSIVGAFVRS 15
+G+ESNVF+CNALVAMY+RCG L+EA +FDE++QRGI +V+SWNSIV A V+S
Sbjct: 183 CNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKS 237
Score = 70.5 bits (171), Expect = 1e-10
Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 6/125 (4%)
Frame = -2
Query: 368 VCCWNQIIKADVCNGYQGDAFNLYCLMLSL------NWKPDGFTYPFVLKACGEIQCVWR 207
V WN I+ A V + A +L+ M + N + D + +L ACG ++ V +
Sbjct: 224 VISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQ 283
Query: 206 GVLVHSVVCRSGYESNVFVCNALVAMYARCGQLDEAVKVFDEVSQRGISNVVSWNSIVGA 27
VH R+G +VFV NAL+ YA+CG ++ AVKVF+ + +VVSWN++V
Sbjct: 284 TKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMME---FKDVVSWNAMVAG 340
Query: 26 FVRSG 12
+ +SG
Sbjct: 341 YSQSG 345
Score = 64.7 bits (156), Expect = 8e-09
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Frame = -2
Query: 368 VCCWNQIIKADVCNGYQGDAFNLYCLMLSLNW--KPDGFTYPFVLKACGEIQCVWRGVLV 195
V W +I G DA L+ M+S + P+ +T +L AC + + G +
Sbjct: 479 VVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQI 538
Query: 194 HSVVCRSG-YESNV-FVCNALVAMYARCGQLDEAVKVFDEVSQRGISNVVSWNSIVGAFV 21
H+ V R YES+ FV N L+ MY++CG +D A VFD +SQ+ + +SW S++ +
Sbjct: 539 HAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQK---SAISWTSMMTGYG 595
Query: 20 RSG 12
G
Sbjct: 596 MHG 598
>emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
Length = 897
Score = 133 bits (334), Expect = 2e-29
Identities = 61/115 (53%), Positives = 80/115 (69%)
Frame = -2
Query: 359 WNQIIKADVCNGYQGDAFNLYCLMLSLNWKPDGFTYPFVLKACGEIQCVWRGVLVHSVVC 180
WN +I+ + G A N+ C ML +PD FT P VLKACGE+ G H ++C
Sbjct: 130 WNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLIC 189
Query: 179 RSGYESNVFVCNALVAMYARCGQLDEAVKVFDEVSQRGISNVVSWNSIVGAFVRS 15
+G+ESNVF+CNALVAMY+RCG L+EA +FDE++QRGI +V+SWNSIV A V+S
Sbjct: 190 CNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKS 244
Score = 70.5 bits (171), Expect = 1e-10
Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 6/125 (4%)
Frame = -2
Query: 368 VCCWNQIIKADVCNGYQGDAFNLYCLMLSL------NWKPDGFTYPFVLKACGEIQCVWR 207
V WN I+ A V + A +L+ M + N + D + +L ACG ++ V +
Sbjct: 231 VISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQ 290
Query: 206 GVLVHSVVCRSGYESNVFVCNALVAMYARCGQLDEAVKVFDEVSQRGISNVVSWNSIVGA 27
VH R+G +VFV NAL+ YA+CG ++ AVKVF+ + +VVSWN++V
Sbjct: 291 TKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMME---FKDVVSWNAMVAG 347
Query: 26 FVRSG 12
+ +SG
Sbjct: 348 YSQSG 352
Score = 64.7 bits (156), Expect = 8e-09
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 4/123 (3%)
Frame = -2
Query: 368 VCCWNQIIKADVCNGYQGDAFNLYCLMLSLNW--KPDGFTYPFVLKACGEIQCVWRGVLV 195
V W +I G DA L+ M+S + P+ +T +L AC + + G +
Sbjct: 486 VVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQI 545
Query: 194 HSVVCRSG-YESNV-FVCNALVAMYARCGQLDEAVKVFDEVSQRGISNVVSWNSIVGAFV 21
H+ V R YES+ FV N L+ MY++CG +D A VFD +SQ+ + +SW S++ +
Sbjct: 546 HAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQK---SAISWTSMMTGYG 602
Query: 20 RSG 12
G
Sbjct: 603 MHG 605
>ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Vitis vinifera]
Length = 852
Score = 131 bits (330), Expect = 5e-29
Identities = 63/123 (51%), Positives = 84/123 (68%)
Frame = -2
Query: 377 SNAVCCWNQIIKADVCNGYQGDAFNLYCLMLSLNWKPDGFTYPFVLKACGEIQCVWRGVL 198
S+ V WNQ+I+ V G+ D LY M L W+PD +T+PFVLKACGEI G
Sbjct: 88 SHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGAS 147
Query: 197 VHSVVCRSGYESNVFVCNALVAMYARCGQLDEAVKVFDEVSQRGISNVVSWNSIVGAFVR 18
VH+VV SG+E NVFV N LV+MY RCG + A +VFDE+ +RG+ ++VSWNSIV A+++
Sbjct: 148 VHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQ 207
Query: 17 SGE 9
G+
Sbjct: 208 GGD 210
Score = 74.7 bits (182), Expect = 7e-12
Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Frame = -2
Query: 359 WNQIIKADVCNGYQGDAFNLYCLMLS-LNWKPDGFTYPFVLKACGEIQCVWRGVLVHSVV 183
WN I+ A + G A ++ M L +PD + VL AC + RG VH
Sbjct: 198 WNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYA 257
Query: 182 CRSGYESNVFVCNALVAMYARCGQLDEAVKVFDEVSQRGISNVVSWNSIVGAFVRSG 12
RSG +VFV NA+V MYA+CG ++EA KVF+ + + +VVSWN++V + + G
Sbjct: 258 LRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMK---VKDVVSWNAMVTGYSQIG 311
Score = 62.8 bits (151), Expect = 3e-08
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
Frame = -2
Query: 371 AVCCWNQIIKADVCNGYQGDAFNLYCLMLSLN--WKPDGFTYPFVLKACGEIQCVWRGVL 198
+V W +I + +G +A L+ ML + P+ FT L AC + + G
Sbjct: 441 SVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQ 500
Query: 197 VHSVVCRSGYESNV-FVCNALVAMYARCGQLDEAVKVFDEVSQRGISNVVSWNSIVGAFV 21
+H+ V R+ +ES + FV N L+ MY++ G +D A VFD + QR N VSW S++ +
Sbjct: 501 IHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQR---NGVSWTSLMTGYG 557
Query: 20 RSG 12
G
Sbjct: 558 MHG 560
>emb|CBI40338.3| unnamed protein product [Vitis vinifera]
Length = 487
Score = 131 bits (330), Expect = 5e-29
Identities = 63/123 (51%), Positives = 84/123 (68%)
Frame = -2
Query: 377 SNAVCCWNQIIKADVCNGYQGDAFNLYCLMLSLNWKPDGFTYPFVLKACGEIQCVWRGVL 198
S+ V WNQ+I+ V G+ D LY M L W+PD +T+PFVLKACGEI G
Sbjct: 88 SHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGAS 147
Query: 197 VHSVVCRSGYESNVFVCNALVAMYARCGQLDEAVKVFDEVSQRGISNVVSWNSIVGAFVR 18
VH+VV SG+E NVFV N LV+MY RCG + A +VFDE+ +RG+ ++VSWNSIV A+++
Sbjct: 148 VHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQ 207
Query: 17 SGE 9
G+
Sbjct: 208 GGD 210
Score = 74.7 bits (182), Expect = 7e-12
Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Frame = -2
Query: 359 WNQIIKADVCNGYQGDAFNLYCLMLS-LNWKPDGFTYPFVLKACGEIQCVWRGVLVHSVV 183
WN I+ A + G A ++ M L +PD + VL AC + RG VH
Sbjct: 198 WNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYA 257
Query: 182 CRSGYESNVFVCNALVAMYARCGQLDEAVKVFDEVSQRGISNVVSWNSIVGAFVRSG 12
RSG +VFV NA+V MYA+CG ++EA KVF+ + + +VVSWN++V + + G
Sbjct: 258 LRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMK---VKDVVSWNAMVTGYSQIG 311