BLASTX nr result

ID: Coptis21_contig00032986 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00032986
         (327 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002297785.1| predicted protein [Populus trichocarpa] gi|2...   102   4e-20
ref|XP_002304762.1| predicted protein [Populus trichocarpa] gi|2...    99   4e-19
gb|AFW87474.1| hypothetical protein ZEAMMB73_309562 [Zea mays]         98   8e-19
ref|XP_003606750.1| hypothetical protein MTR_4g065200 [Medicago ...    98   8e-19
emb|CBI16413.3| unnamed protein product [Vitis vinifera]               98   8e-19

>ref|XP_002297785.1| predicted protein [Populus trichocarpa] gi|222845043|gb|EEE82590.1|
           predicted protein [Populus trichocarpa]
          Length = 858

 Score =  102 bits (253), Expect = 4e-20
 Identities = 62/110 (56%), Positives = 71/110 (64%), Gaps = 6/110 (5%)
 Frame = -3

Query: 316 GWGTQFNSFWCCCGTGIESFSKLGDSIYF--EGERNQFYIIELISSSFDWKLRNIMKYQK 143
           GWGT +++FWCC GTGIESFSKLGDSIYF  EGE    YII+ ISSS DWK   IM  QK
Sbjct: 464 GWGTLYDTFWCCYGTGIESFSKLGDSIYFEEEGEAPGLYIIQYISSSLDWKSGQIMINQK 523

Query: 142 VKAV---DHALRVTFKFSRNDVLTQGTRFINLNLWIPS*TN-SSAVASLN 5
           V  V   D  LRVTF FS N   +Q +    LNL IP  T+   A A++N
Sbjct: 524 VDPVVSSDPYLRVTFTFSPNKGSSQAS---TLNLRIPVWTHLDGATATIN 570


>ref|XP_002304762.1| predicted protein [Populus trichocarpa] gi|222842194|gb|EEE79741.1|
           predicted protein [Populus trichocarpa]
          Length = 858

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 60/109 (55%), Positives = 69/109 (63%), Gaps = 5/109 (4%)
 Frame = -3

Query: 316 GWGTQFNSFWCCCGTGIESFSKLGDSIYF-EGERNQFYIIELISSSFDWKLRNIMKYQKV 140
           GWGT ++SFWCC GTGIESFSKLGDSIYF EGE    YII+ ISSS DWK   I+  QKV
Sbjct: 464 GWGTSYDSFWCCYGTGIESFSKLGDSIYFEEGEAPGLYIIQYISSSLDWKSGQIVLNQKV 523

Query: 139 KAV---DHALRVTFKFSRNDVLTQGTRFINLNLWIPS*TNS-SAVASLN 5
             +   D  LRVT  FS     +Q +    L L IP  TNS  A A++N
Sbjct: 524 DPIVSSDPYLRVTLTFSPKKGTSQAS---TLYLRIPIWTNSEGATATIN 569


>gb|AFW87474.1| hypothetical protein ZEAMMB73_309562 [Zea mays]
          Length = 483

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 54/111 (48%), Positives = 71/111 (63%), Gaps = 6/111 (5%)
 Frame = -3

Query: 316 GWGTQFNSFWCCCGTGIESFSKLGDSIYFE--GERNQFYIIELISSSFDWKLRNIMKYQK 143
           GWGTQ+ SFWCC GTGIESFSKLGDSIYFE  GER   Y+++ I S+F W+   +   Q+
Sbjct: 102 GWGTQYESFWCCYGTGIESFSKLGDSIYFEERGERPALYVVQFIPSTFSWRTAGLTVAQQ 161

Query: 142 ---VKAVDHALRVTFKFSRNDVLTQGTRFINLNLWIPS*TN-SSAVASLNG 2
              + + D  L+V+F  S     T   +F  LN+ IPS T+ + A A+LNG
Sbjct: 162 LMPLSSSDQYLQVSFSVSAK---TTNGQFATLNVRIPSWTSLNGAKATLNG 209


>ref|XP_003606750.1| hypothetical protein MTR_4g065200 [Medicago truncatula]
           gi|355507805|gb|AES88947.1| hypothetical protein
           MTR_4g065200 [Medicago truncatula]
          Length = 646

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 56/109 (51%), Positives = 69/109 (63%), Gaps = 5/109 (4%)
 Frame = -3

Query: 319 QGWGTQFNSFWCCCGTGIESFSKLGDSIYF--EGERNQFYIIELISSSFDWKLRNIMKYQ 146
           +GWG  FN+FWCC GTGIESFSKLGDSIYF  EG     YII+ ISSSF+WK   I+  Q
Sbjct: 464 KGWGNPFNTFWCCYGTGIESFSKLGDSIYFEEEGHNPSLYIIQYISSSFNWKSGKILLTQ 523

Query: 145 KV---KAVDHALRVTFKFSRNDVLTQGTRFINLNLWIPS*TNSSAVASL 8
            V    + D  LRVTF FS N+  T GT    LN  +PS +++    ++
Sbjct: 524 TVVPAASSDPYLRVTFTFSPNE--TTGTS-STLNFRVPSWSHADGAKAI 569


>emb|CBI16413.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 59/110 (53%), Positives = 71/110 (64%), Gaps = 6/110 (5%)
 Frame = -3

Query: 316 GWGTQFNSFWCCCGTGIESFSKLGDSIYF--EGERNQFYIIELISSSFDWKLRNIMKYQK 143
           GWGT+F+SFWCC GTGIESFSKLGDSIYF  EG+  + YII+ ISSS DWK   I+  QK
Sbjct: 469 GWGTKFDSFWCCYGTGIESFSKLGDSIYFEEEGKSPEVYIIQYISSSLDWKSGQIVLNQK 528

Query: 142 VKAV---DHALRVTFKFSRNDVLTQGTRFINLNLWIPS*TNSS-AVASLN 5
           V  V   D  LR T  F+  +   Q +    +NL IP   +SS A AS+N
Sbjct: 529 VDPVVSWDPYLRTTLTFTPKEGAGQSS---TINLRIPVWASSSGAKASIN 575


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