BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00032918
         (457 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004163031.1| PREDICTED: pentatricopeptide repeat-containi...   105   5e-21
ref|XP_004148334.1| PREDICTED: pentatricopeptide repeat-containi...   105   5e-21
ref|XP_002518234.1| pentatricopeptide repeat-containing protein,...   101   5e-20
ref|XP_003547448.1| PREDICTED: pentatricopeptide repeat-containi...    96   2e-18
ref|NP_001078759.1| pentatricopeptide repeat-containing protein ...    86   4e-15

>ref|XP_004163031.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
           mitochondrial-like [Cucumis sativus]
          Length = 1061

 Score =  105 bits (261), Expect = 5e-21
 Identities = 54/127 (42%), Positives = 84/127 (66%), Gaps = 2/127 (1%)
 Frame = +1

Query: 46  SYTSSQN-LSKTLSLQNLLKSGFTPTLKTLNHFLSFLSKSNHLNFLLYFFSQMNANNIKG 222
           S+T S N  S +  LQ LLKSGF+PTLK++NHF  FL  +   +++++FF Q+NAN IKG
Sbjct: 15  SFTFSSNPSSNSRCLQTLLKSGFSPTLKSINHFFRFLYHNRRFDYVIHFFYQLNANQIKG 74

Query: 223 NSQTHSIIIRTLIKANRYEEAEHFM-TQMLKDGHFPQKGIFDSLIQGLISPGESPERAFS 399
           NS+TH I+   L+K+++Y++ E  + TQML    F +  +++ LI+G+    E P +A  
Sbjct: 75  NSKTHLILSWALLKSHKYDDLEQILKTQMLVSSIFHRNRLWNLLIRGICVNKEDPGKALW 134

Query: 400 LLQQCLK 420
           +LQ C +
Sbjct: 135 VLQDCFR 141


>ref|XP_004148334.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
           mitochondrial-like [Cucumis sativus]
          Length = 1085

 Score =  105 bits (261), Expect = 5e-21
 Identities = 54/127 (42%), Positives = 84/127 (66%), Gaps = 2/127 (1%)
 Frame = +1

Query: 46  SYTSSQN-LSKTLSLQNLLKSGFTPTLKTLNHFLSFLSKSNHLNFLLYFFSQMNANNIKG 222
           S+T S N  S +  LQ LLKSGF+PTLK++NHF  FL  +   +++++FF Q+NAN IKG
Sbjct: 15  SFTFSSNPSSNSRCLQTLLKSGFSPTLKSINHFFRFLYHNRRFDYVIHFFYQLNANQIKG 74

Query: 223 NSQTHSIIIRTLIKANRYEEAEHFM-TQMLKDGHFPQKGIFDSLIQGLISPGESPERAFS 399
           NS+TH I+   L+K+++Y++ E  + TQML    F +  +++ LI+G+    E P +A  
Sbjct: 75  NSKTHLILSWALLKSHKYDDLEQILKTQMLVSSIFHRNRLWNLLIRGICVNKEDPGKALW 134

Query: 400 LLQQCLK 420
           +LQ C +
Sbjct: 135 VLQDCFR 141


>ref|XP_002518234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542581|gb|EEF44120.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 932

 Score =  101 bits (252), Expect = 5e-20
 Identities = 55/136 (40%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
 Frame = +1

Query: 19  SKTFSTSAISYTSSQNLSKTLSLQNLLKSGFTPTLKTLNHFLSFLSKSNHLNFLLYFFSQ 198
           S + +T  +S   S   S + S+QNLLK GFTPTLK++N +L FL K +    + +F SQ
Sbjct: 4   STSVTTIKLSRYFSSFSSASSSIQNLLKRGFTPTLKSINQYLLFLVKIHKFTLVPHFLSQ 63

Query: 199 MNANNIKGNSQTHSIIIRTLIKANRYEEAEHFMTQMLKDGHFPQKG--IFDSLIQGLISP 372
           +N N I+GN QTHS+ +  L+K   +EEAEHF+           KG    DSLIQ + + 
Sbjct: 64  LNQNQIEGNYQTHSLFLLALLKLKNFEEAEHFIKTHRAKSSSSSKGHKFLDSLIQAISTD 123

Query: 373 GESPERAFSLLQQCLK 420
            + P +A  +L  CL+
Sbjct: 124 EKDPNKALLVLHDCLR 139


>ref|XP_003547448.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
           mitochondrial-like [Glycine max]
          Length = 1064

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 52/118 (44%), Positives = 75/118 (63%)
 Frame = +1

Query: 73  KTLSLQNLLKSGFTPTLKTLNHFLSFLSKSNHLNFLLYFFSQMNANNIKGNSQTHSIIIR 252
           +TLSLQ  LK GFTPT K +N FL FL +    N + +FFSQ+ +NN   N +T S++  
Sbjct: 6   RTLSLQTSLKRGFTPTPKPINCFLLFLFRHRKFNLITHFFSQLKSNNAPTNRRTLSLLTW 65

Query: 253 TLIKANRYEEAEHFMTQMLKDGHFPQKGIFDSLIQGLISPGESPERAFSLLQQCLKFR 426
           +L+K++++EEAE FM       H     ++DSLIQGL      PE+A S+LQ+C++ R
Sbjct: 66  SLLKSHKFEEAEQFMH---SHTHITHSSMWDSLIQGL----HDPEKALSVLQRCVRDR 116


>ref|NP_001078759.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|223635742|sp|Q9LVD3.2|PP434_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g57250, mitochondrial; Flags: Precursor
           gi|332009488|gb|AED96871.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 971

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 44/118 (37%), Positives = 70/118 (59%), Gaps = 1/118 (0%)
 Frame = +1

Query: 70  SKTLSLQNLLKSGFTPTLKTLNHFLSFLSKSNHLNFLLYFFSQMNANNIKGNSQTHSIII 249
           S   SLQ+LLKSGF+PTL +++ FL +L +    N +L F+SQ+++  I  N + +SI+ 
Sbjct: 9   SGLFSLQSLLKSGFSPTLNSIDRFLRYLYRLQKFNCILQFYSQLDSKQININHRIYSIVS 68

Query: 250 RTLIKANRYEEAEHFMT-QMLKDGHFPQKGIFDSLIQGLISPGESPERAFSLLQQCLK 420
              +  NRYE+AE F+   + K   FP+  + DSLI G     + P +   +L+ CL+
Sbjct: 69  WAFLNLNRYEDAEKFINIHISKASIFPRTHMLDSLIHGFSITRDDPSKGLLILRDCLR 126