BLASTX nr result
ID: Coptis21_contig00032869
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00032869 (255 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002314675.1| predicted protein [Populus trichocarpa] gi|2... 115 3e-24 ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containi... 105 4e-21 ref|XP_003610748.1| Pentatricopeptide repeat-containing protein ... 103 1e-20 ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containi... 103 2e-20 ref|XP_002885518.1| pentatricopeptide repeat-containing protein ... 92 4e-17 >ref|XP_002314675.1| predicted protein [Populus trichocarpa] gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa] Length = 845 Score = 115 bits (289), Expect = 3e-24 Identities = 49/84 (58%), Positives = 72/84 (85%) Frame = +2 Query: 2 GEPDYACCIFDPMVNKTTVSWNTMVAGFIRNGDIEAASRMLNLMPDKDLVSWNTITGALV 181 G+ + AC +FD M+NKT VSWN+++AGF+RNGD+E+A ++ + MPD DLVSWNT+ GALV Sbjct: 390 GKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALV 449 Query: 182 RESLFEEALELFQMMQNKGVKGDK 253 +ES+F+EA+ELF++MQ++G+ DK Sbjct: 450 QESMFKEAIELFRVMQSEGITADK 473 >ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690 [Vitis vinifera] Length = 836 Score = 105 bits (262), Expect = 4e-21 Identities = 45/84 (53%), Positives = 66/84 (78%) Frame = +2 Query: 2 GEPDYACCIFDPMVNKTTVSWNTMVAGFIRNGDIEAASRMLNLMPDKDLVSWNTITGALV 181 G+P+ AC +FD M NKT VSWN++ AGFIRNGD+E+A + N +P+++ V WNT+ LV Sbjct: 382 GKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLV 441 Query: 182 RESLFEEALELFQMMQNKGVKGDK 253 ++SLFE+A+ELF+ MQ +G+K D+ Sbjct: 442 QKSLFEDAIELFREMQGEGIKADR 465 >ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] Length = 828 Score = 103 bits (257), Expect = 1e-20 Identities = 43/84 (51%), Positives = 67/84 (79%) Frame = +2 Query: 2 GEPDYACCIFDPMVNKTTVSWNTMVAGFIRNGDIEAASRMLNLMPDKDLVSWNTITGALV 181 G+ + AC +FD M NKT V+WN+++AG +R+G++E A R+ MP+ +LVSWNT+ GA+V Sbjct: 373 GKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMV 432 Query: 182 RESLFEEALELFQMMQNKGVKGDK 253 + S+FEEA++L + MQN+G+KGD+ Sbjct: 433 QASMFEEAIDLLREMQNQGIKGDR 456 >ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690-like [Glycine max] Length = 836 Score = 103 bits (256), Expect = 2e-20 Identities = 45/84 (53%), Positives = 68/84 (80%) Frame = +2 Query: 2 GEPDYACCIFDPMVNKTTVSWNTMVAGFIRNGDIEAASRMLNLMPDKDLVSWNTITGALV 181 G+ + AC +F+ M NKT V+WN+++AG +R+GD+E A R+ + M ++DLVSWNT+ GALV Sbjct: 381 GKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALV 440 Query: 182 RESLFEEALELFQMMQNKGVKGDK 253 + S+FEEA+ELF+ MQN+G+ GD+ Sbjct: 441 QVSMFEEAIELFREMQNQGIPGDR 464 >ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 904 Score = 92.0 bits (227), Expect = 4e-17 Identities = 41/75 (54%), Positives = 59/75 (78%) Frame = +2 Query: 11 DYACCIFDPMVNKTTVSWNTMVAGFIRNGDIEAASRMLNLMPDKDLVSWNTITGALVRES 190 D A IFD M NKT V+WN++VAG+I NG+++AA N MP+K++VSWNTI ALV+E+ Sbjct: 388 DTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQEN 447 Query: 191 LFEEALELFQMMQNK 235 ++EEA+E+F MQ++ Sbjct: 448 MYEEAIEVFHYMQSQ 462