BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00032869
         (255 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002314675.1| predicted protein [Populus trichocarpa] gi|2...   115   3e-24
ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containi...   105   4e-21
ref|XP_003610748.1| Pentatricopeptide repeat-containing protein ...   103   1e-20
ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containi...   103   2e-20
ref|XP_002885518.1| pentatricopeptide repeat-containing protein ...    92   4e-17

>ref|XP_002314675.1| predicted protein [Populus trichocarpa] gi|222863715|gb|EEF00846.1|
           predicted protein [Populus trichocarpa]
          Length = 845

 Score =  115 bits (289), Expect = 3e-24
 Identities = 49/84 (58%), Positives = 72/84 (85%)
 Frame = +2

Query: 2   GEPDYACCIFDPMVNKTTVSWNTMVAGFIRNGDIEAASRMLNLMPDKDLVSWNTITGALV 181
           G+ + AC +FD M+NKT VSWN+++AGF+RNGD+E+A ++ + MPD DLVSWNT+ GALV
Sbjct: 390 GKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALV 449

Query: 182 RESLFEEALELFQMMQNKGVKGDK 253
           +ES+F+EA+ELF++MQ++G+  DK
Sbjct: 450 QESMFKEAIELFRVMQSEGITADK 473


>ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  105 bits (262), Expect = 4e-21
 Identities = 45/84 (53%), Positives = 66/84 (78%)
 Frame = +2

Query: 2   GEPDYACCIFDPMVNKTTVSWNTMVAGFIRNGDIEAASRMLNLMPDKDLVSWNTITGALV 181
           G+P+ AC +FD M NKT VSWN++ AGFIRNGD+E+A  + N +P+++ V WNT+   LV
Sbjct: 382 GKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLV 441

Query: 182 RESLFEEALELFQMMQNKGVKGDK 253
           ++SLFE+A+ELF+ MQ +G+K D+
Sbjct: 442 QKSLFEDAIELFREMQGEGIKADR 465


>ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355512083|gb|AES93706.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  103 bits (257), Expect = 1e-20
 Identities = 43/84 (51%), Positives = 67/84 (79%)
 Frame = +2

Query: 2   GEPDYACCIFDPMVNKTTVSWNTMVAGFIRNGDIEAASRMLNLMPDKDLVSWNTITGALV 181
           G+ + AC +FD M NKT V+WN+++AG +R+G++E A R+   MP+ +LVSWNT+ GA+V
Sbjct: 373 GKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMV 432

Query: 182 RESLFEEALELFQMMQNKGVKGDK 253
           + S+FEEA++L + MQN+G+KGD+
Sbjct: 433 QASMFEEAIDLLREMQNQGIKGDR 456


>ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  103 bits (256), Expect = 2e-20
 Identities = 45/84 (53%), Positives = 68/84 (80%)
 Frame = +2

Query: 2   GEPDYACCIFDPMVNKTTVSWNTMVAGFIRNGDIEAASRMLNLMPDKDLVSWNTITGALV 181
           G+ + AC +F+ M NKT V+WN+++AG +R+GD+E A R+ + M ++DLVSWNT+ GALV
Sbjct: 381 GKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALV 440

Query: 182 RESLFEEALELFQMMQNKGVKGDK 253
           + S+FEEA+ELF+ MQN+G+ GD+
Sbjct: 441 QVSMFEEAIELFREMQNQGIPGDR 464


>ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297331358|gb|EFH61777.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 904

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 41/75 (54%), Positives = 59/75 (78%)
 Frame = +2

Query: 11  DYACCIFDPMVNKTTVSWNTMVAGFIRNGDIEAASRMLNLMPDKDLVSWNTITGALVRES 190
           D A  IFD M NKT V+WN++VAG+I NG+++AA    N MP+K++VSWNTI  ALV+E+
Sbjct: 388 DTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQEN 447

Query: 191 LFEEALELFQMMQNK 235
           ++EEA+E+F  MQ++
Sbjct: 448 MYEEAIEVFHYMQSQ 462