BLASTX nr result

ID: Coptis21_contig00032808 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00032808
         (395 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADE75983.1| unknown [Picea sitchensis]                              59   3e-07
ref|XP_003543854.1| PREDICTED: uncharacterized protein LOC100780...    58   9e-07
ref|XP_003618961.1| hypothetical protein MTR_6g029340 [Medicago ...    58   9e-07
ref|XP_002509591.1| DNA binding protein, putative [Ricinus commu...    56   3e-06
ref|XP_003611303.1| hypothetical protein MTR_5g012510 [Medicago ...    55   4e-06

>gb|ADE75983.1| unknown [Picea sitchensis]
          Length = 478

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 29/74 (39%), Positives = 46/74 (62%)
 Frame = -3

Query: 390 PLLRKVAIRILSQPCSSSLCGRKWSAYEVVRTMKANNSLESTFEEIVYTRMNMMMMASYR 211
           P+L+K+AIR+LSQ CSSS C R WS +E + T K N    S   ++VY   N+ +     
Sbjct: 270 PILQKMAIRVLSQTCSSSGCERNWSVFEKIHTKKRNRLDTSCLNDLVYVHYNLRLWVKQL 329

Query: 210 DLEMQDKFAINLEK 169
           ++++ D  AI+L++
Sbjct: 330 EIKI-DARAISLDE 342


>ref|XP_003543854.1| PREDICTED: uncharacterized protein LOC100780312 [Glycine max]
          Length = 557

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 21/57 (36%), Positives = 38/57 (66%)
 Frame = -3

Query: 390 PLLRKVAIRILSQPCSSSLCGRKWSAYEVVRTMKANNSLESTFEEIVYTRMNMMMMA 220
           P+L+K+A+++L+QPCSSS C R WS Y  + ++K N       E++V+   N+ +++
Sbjct: 450 PILQKIALKLLAQPCSSSCCERNWSTYSFIHSLKRNKMTPHRAEDLVFVHSNLRLLS 506


>ref|XP_003618961.1| hypothetical protein MTR_6g029340 [Medicago truncatula]
           gi|355493976|gb|AES75179.1| hypothetical protein
           MTR_6g029340 [Medicago truncatula]
          Length = 725

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
 Frame = -3

Query: 390 PLLRKVAIRILSQPCSSSLCGRKWSAYEVVRTMKANNSLESTFEEIVYTRMNMMMMA--- 220
           P L++ AIRILS  CSSS C R WSA+E+V T K N   +    ++VY   NM +     
Sbjct: 588 PELKRFAIRILSLTCSSSGCERNWSAFEMVHTKKRNRLRQQKMNDLVYVMANMRLTRKET 647

Query: 219 ------SYRDLEMQDKFAINLEKQGEHPEDIHN 139
                  + D+E  D+F  +     +H +D  N
Sbjct: 648 RKREPFEFVDIESDDEFLTSSTIGLDHNDDGEN 680


>ref|XP_002509591.1| DNA binding protein, putative [Ricinus communis]
           gi|223549490|gb|EEF50978.1| DNA binding protein,
           putative [Ricinus communis]
          Length = 670

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 24/61 (39%), Positives = 37/61 (60%)
 Frame = -3

Query: 393 VPLLRKVAIRILSQPCSSSLCGRKWSAYEVVRTMKANNSLESTFEEIVYTRMNMMMMASY 214
           +P L++VAIR+LSQPCSS  C   WS +E + T K N +      ++V+   N+ + A Y
Sbjct: 566 IPTLQRVAIRLLSQPCSSHWCRWNWSTFESIHTKKRNKAELEKLNDLVFVHCNLWLQAIY 625

Query: 213 R 211
           +
Sbjct: 626 Q 626


>ref|XP_003611303.1| hypothetical protein MTR_5g012510 [Medicago truncatula]
           gi|355512638|gb|AES94261.1| hypothetical protein
           MTR_5g012510 [Medicago truncatula]
          Length = 725

 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 34/110 (30%), Positives = 59/110 (53%)
 Frame = -3

Query: 390 PLLRKVAIRILSQPCSSSLCGRKWSAYEVVRTMKANNSLESTFEEIVYTRMNMMMMASYR 211
           P L+K+AIR+LSQ CSSS C R WS +E + + K N        ++V+ R N+M+    R
Sbjct: 558 PHLQKLAIRVLSQTCSSSGCERNWSVFEHIHSKKRNRLEHQRLNDLVFVRYNLML--ENR 615

Query: 210 DLEMQDKFAINLEKQGEHPEDIHNSCRKSKSIIHISGDALTLDEVSDLES 61
           + ++++   IN E   +H ++          ++  S   LT++E+  L +
Sbjct: 616 NNKIRNYDPINDELLHDHHDN---------WVLEDSPPFLTVEELESLRN 656


Top