BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00032784
         (315 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI29825.3| unnamed protein product [Vitis vinifera]              126   2e-27
ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containi...   126   2e-27
ref|XP_002529510.1| pentatricopeptide repeat-containing protein,...   113   1e-23
ref|NP_178072.1| pentatricopeptide repeat-containing protein [Ar...   107   8e-22
ref|XP_002889252.1| pentatricopeptide repeat-containing protein ...   107   8e-22

>emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score =  126 bits (316), Expect = 2e-27
 Identities = 54/105 (51%), Positives = 79/105 (75%)
 Frame = -1

Query: 315 LSYRFFLWAMRKKDLRSWASHNLMIDILVINNGFDLAWKVIQELKSIQLFIRPYAFTVLI 136
           L +RFF+W  R++  RSW +HNL+ID+L  ++GFD  WK+++ELK+  + I P  F+VLI
Sbjct: 79  LGFRFFIWTTRRRSFRSWVTHNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLI 138

Query: 135 TAYAKAGFEERAVECFGKMKEFNSVPNTLTFNIVLHLLVEKQVFL 1
            AYAK+G  E+AVE FGKMK+F   P+  T+N +LH++V+K+VFL
Sbjct: 139 AAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFL 183


>ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score =  126 bits (316), Expect = 2e-27
 Identities = 54/105 (51%), Positives = 79/105 (75%)
 Frame = -1

Query: 315 LSYRFFLWAMRKKDLRSWASHNLMIDILVINNGFDLAWKVIQELKSIQLFIRPYAFTVLI 136
           L +RFF+W  R++  RSW +HNL+ID+L  ++GFD  WK+++ELK+  + I P  F+VLI
Sbjct: 79  LGFRFFIWTTRRRSFRSWVTHNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLI 138

Query: 135 TAYAKAGFEERAVECFGKMKEFNSVPNTLTFNIVLHLLVEKQVFL 1
            AYAK+G  E+AVE FGKMK+F   P+  T+N +LH++V+K+VFL
Sbjct: 139 AAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFL 183


>ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223531026|gb|EEF32879.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 804

 Score =  113 bits (283), Expect = 1e-23
 Identities = 53/105 (50%), Positives = 75/105 (71%)
 Frame = -1

Query: 315 LSYRFFLWAMRKKDLRSWASHNLMIDILVINNGFDLAWKVIQELKSIQLFIRPYAFTVLI 136
           L +RFF+WA + + LRSW SHN++ID+L+ +NGF+L W+V++E+K     I   AFTVLI
Sbjct: 74  LGFRFFIWASKFRRLRSWVSHNMIIDMLIKDNGFELYWQVLKEIKRCGFSISADAFTVLI 133

Query: 135 TAYAKAGFEERAVECFGKMKEFNSVPNTLTFNIVLHLLVEKQVFL 1
            AYAK    E+AVE F  MK+F+  P+  T+N VLH++V K+V L
Sbjct: 134 QAYAKMDMIEKAVESFEMMKDFDCKPDVFTYNTVLHVMVRKEVVL 178


>ref|NP_178072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75200774|sp|Q9SAJ5.1|PP133_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g79540 gi|4835755|gb|AAD30222.1|AC007202_4 Contains
           similarity to gi|2827663 F18F4.190 membrane-associated
           salt-inducible-like protein from Arabidopsis thaliana
           BAC gb|AL021637 [Arabidopsis thaliana]
           gi|332198140|gb|AEE36261.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 780

 Score =  107 bits (268), Expect = 8e-22
 Identities = 50/104 (48%), Positives = 75/104 (72%)
 Frame = -1

Query: 315 LSYRFFLWAMRKKDLRSWASHNLMIDILVINNGFDLAWKVIQELKSIQLFIRPYAFTVLI 136
           L +RFF+WA R++ LRS  S  L+ID+L  +NG DL W+ ++ELKS  + +  Y F VLI
Sbjct: 75  LGFRFFIWASRRERLRSRESFGLVIDMLSEDNGCDLYWQTLEELKSGGVSVDSYCFCVLI 134

Query: 135 TAYAKAGFEERAVECFGKMKEFNSVPNTLTFNIVLHLLVEKQVF 4
           +AYAK G  E+AVE FG+MKEF+  P+  T+N++L +++ ++VF
Sbjct: 135 SAYAKMGMAEKAVESFGRMKEFDCRPDVFTYNVILRVMMREEVF 178


>ref|XP_002889252.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297335093|gb|EFH65511.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 780

 Score =  107 bits (268), Expect = 8e-22
 Identities = 50/104 (48%), Positives = 74/104 (71%)
 Frame = -1

Query: 315 LSYRFFLWAMRKKDLRSWASHNLMIDILVINNGFDLAWKVIQELKSIQLFIRPYAFTVLI 136
           L +RFF+WA R++ LRS  S  L+ID+L  +NG DL W+ ++ELKS  + +  Y F VLI
Sbjct: 75  LGFRFFIWASRRERLRSGESFGLVIDMLSEDNGCDLYWQTLEELKSGGVSVDSYCFCVLI 134

Query: 135 TAYAKAGFEERAVECFGKMKEFNSVPNTLTFNIVLHLLVEKQVF 4
           +AYAK G  E+AVE FG+MKEF+  P+  T+N++L +++ + VF
Sbjct: 135 SAYAKMGLAEKAVESFGRMKEFDCRPDVFTYNVILRIMMREDVF 178