BLASTX nr result

ID: Coptis21_contig00032749 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00032749
         (262 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002863334.1| hypothetical protein ARALYDRAFT_494215 [Arab...    78   9e-13
ref|NP_199569.1| uncharacterized protein [Arabidopsis thaliana] ...    77   2e-12
gb|ABD65133.1| hypothetical protein 40.t00008 [Brassica oleracea]      74   1e-11
ref|XP_002870114.1| hypothetical protein ARALYDRAFT_493150 [Arab...    72   4e-11
ref|NP_001190749.1| uncharacterized protein [Arabidopsis thalian...    72   5e-11

>ref|XP_002863334.1| hypothetical protein ARALYDRAFT_494215 [Arabidopsis lyrata subsp.
           lyrata] gi|297309169|gb|EFH39593.1| hypothetical protein
           ARALYDRAFT_494215 [Arabidopsis lyrata subsp. lyrata]
          Length = 748

 Score = 77.8 bits (190), Expect = 9e-13
 Identities = 36/87 (41%), Positives = 49/87 (56%)
 Frame = +2

Query: 2   PVIGLYISTATLVLLLLMIRDVFHGYRRKKPWLPCEFFXXXXXXXXXXXXXXXXPFDLTT 181
           P+IG+Y++ A+L+  L M  D+ HG+R +K W PC+FF                  DL T
Sbjct: 22  PLIGIYVAVASLICGLAMAADLIHGFRHRKFWFPCKFFSLNATSLTFIAVGIKLSVDLNT 81

Query: 182 PMPSPQDQLSKLCGTTFICISMGFFLP 262
            MPS QDQL+KL  T F+C  MG  +P
Sbjct: 82  SMPSRQDQLAKLSSTVFVCTVMGNSMP 108


>ref|NP_199569.1| uncharacterized protein [Arabidopsis thaliana]
           gi|9758786|dbj|BAB09084.1| unnamed protein product
           [Arabidopsis thaliana] gi|16974605|gb|AAL31205.1|
           AT5g47580/MNJ7_17 [Arabidopsis thaliana]
           gi|23506171|gb|AAN31097.1| At5g47580/MNJ7_17
           [Arabidopsis thaliana] gi|332008151|gb|AED95534.1|
           uncharacterized protein [Arabidopsis thaliana]
          Length = 748

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 36/87 (41%), Positives = 48/87 (55%)
 Frame = +2

Query: 2   PVIGLYISTATLVLLLLMIRDVFHGYRRKKPWLPCEFFXXXXXXXXXXXXXXXXPFDLTT 181
           P IG+Y++ A+L+  L M  D+ HG+R +K W PC+FF                  DL T
Sbjct: 22  PSIGIYVAVASLICGLAMAADLIHGFRHRKFWFPCKFFSLNATSLTFIAVGIKLSVDLNT 81

Query: 182 PMPSPQDQLSKLCGTTFICISMGFFLP 262
            MPS QDQL+KL  T F+C  MG  +P
Sbjct: 82  SMPSRQDQLAKLSSTVFVCTVMGNSMP 108


>gb|ABD65133.1| hypothetical protein 40.t00008 [Brassica oleracea]
          Length = 742

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 33/87 (37%), Positives = 47/87 (54%)
 Frame = +2

Query: 2   PVIGLYISTATLVLLLLMIRDVFHGYRRKKPWLPCEFFXXXXXXXXXXXXXXXXPFDLTT 181
           P IG+Y++TA+L+    M  D+ H +R +K W PC++F                  DL T
Sbjct: 19  PSIGIYVATASLICGAAMFADLLHAFRHRKYWFPCKYFSLNATTLTFISVCVKLSLDLNT 78

Query: 182 PMPSPQDQLSKLCGTTFICISMGFFLP 262
           PMPS QDQL+KL  + F C+ M   +P
Sbjct: 79  PMPSRQDQLAKLSSSVFFCVVMANSMP 105


>ref|XP_002870114.1| hypothetical protein ARALYDRAFT_493150 [Arabidopsis lyrata subsp.
           lyrata] gi|297315950|gb|EFH46373.1| hypothetical protein
           ARALYDRAFT_493150 [Arabidopsis lyrata subsp. lyrata]
          Length = 414

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 33/87 (37%), Positives = 47/87 (54%)
 Frame = +2

Query: 2   PVIGLYISTATLVLLLLMIRDVFHGYRRKKPWLPCEFFXXXXXXXXXXXXXXXXPFDLTT 181
           P IG+Y++ A+++  + M  D+ HG R +K W PC+FF                  DL T
Sbjct: 19  PSIGVYVAAASVICGVAMFSDLLHGLRHRKFWFPCKFFSLNATTLTFISVCVKLSLDLNT 78

Query: 182 PMPSPQDQLSKLCGTTFICISMGFFLP 262
           PMPS QDQL+KL  + F+C  M   +P
Sbjct: 79  PMPSRQDQLAKLSSSVFVCTVMANSMP 105


>ref|NP_001190749.1| uncharacterized protein [Arabidopsis thaliana]
           gi|332658470|gb|AEE83870.1| uncharacterized protein
           [Arabidopsis thaliana]
          Length = 647

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 33/87 (37%), Positives = 47/87 (54%)
 Frame = +2

Query: 2   PVIGLYISTATLVLLLLMIRDVFHGYRRKKPWLPCEFFXXXXXXXXXXXXXXXXPFDLTT 181
           P IG+Y++ A+L+  + M  D+ HG+R +K W PC+FF                  DL T
Sbjct: 19  PSIGVYVAAASLICGVAMFSDLLHGFRHRKFWFPCKFFSLNATTLTFISVCVKLSLDLNT 78

Query: 182 PMPSPQDQLSKLCGTTFICISMGFFLP 262
            MPS QDQL+KL  + F+C  M   +P
Sbjct: 79  SMPSRQDQLAKLSSSVFVCTVMANSMP 105


Top