BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00032699
         (361 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC61290.1| putative retroelement pol polyprotein [Arabidopsi...    49   2e-06
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]                              41   1e-05

>gb|AAC61290.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1149

 Score = 49.3 bits (116), Expect(2) = 2e-06
 Identities = 18/31 (58%), Positives = 23/31 (74%)
 Frame = +3

Query: 3   SINGFSYYASIVDDHSRYCWIFPLCNKSDFC 95
           SI GF YY   +D+ SR+CW +PL +KSDFC
Sbjct: 519 SIQGFQYYVIFIDNRSRFCWFYPLKHKSDFC 549



 Score = 26.9 bits (58), Expect(2) = 2e-06
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 94  AVFQSFKSLVENLLTGKIQCVRTDNG 171
           ++F  F+S VENLL  KI   ++D G
Sbjct: 550 SLFMKFQSFVENLLQTKIGTFQSDGG 575


>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score = 41.2 bits (95), Expect(2) = 1e-05
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = +3

Query: 3   SINGFSYYASIVDDHSRYCWIFPLCNKSD 89
           S+ G  Y+ S +DD+SR CW++P+  KSD
Sbjct: 486 SLGGAKYFVSFIDDYSRRCWVYPIKKKSD 514



 Score = 32.7 bits (73), Expect(2) = 1e-05
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +1

Query: 88  IFAVFQSFKSLVENLLTGKIQCVRTDNG 171
           +FA F++FK+ VE     KI+C RTDNG
Sbjct: 515 VFATFKAFKARVELDSGKKIKCFRTDNG 542