BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00032597
         (474 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat...   125   5e-42
ref|XP_003628710.1| Pentatricopeptide repeat-containing protein ...   119   2e-41
ref|XP_002314911.1| predicted protein [Populus trichocarpa] gi|2...   125   7e-41
ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat...   114   9e-41
ref|XP_002514567.1| pentatricopeptide repeat-containing protein,...   115   4e-39

>ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera] gi|297738214|emb|CBI27415.3|
           unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  125 bits (313), Expect(2) = 5e-42
 Identities = 58/90 (64%), Positives = 69/90 (76%)
 Frame = +3

Query: 3   LCCETQNHNQAKNLHCHILRTSKYPDTFLSNNLINAYSKFKNLTYARNVFDQIPQPNFFS 182
           LCCE+QN  QAK LHC IL+T K P+TFLSNNLI AY K  NL YA +VFD IPQPN FS
Sbjct: 14  LCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPNLFS 73

Query: 183 WNTLLSAYSKSVWVSEMQELFDRMKVKDGV 272
           WNT+LS YSK   +S+MQ++F+ M  +DGV
Sbjct: 74  WNTILSVYSKLGLLSQMQQIFNLMPFRDGV 103



 Score = 71.2 bits (173), Expect(2) = 5e-42
 Identities = 37/68 (54%), Positives = 45/68 (66%)
 Frame = +2

Query: 269 GYANCRMGEESVKYYKLMLRDGSGNLNRITFSTMXXXXXXXXXXXXGKQIHGQILKLGFQ 448
           GYAN     ++V+ YKLML+D + NLNRITFSTM            G+QI+GQILK GF 
Sbjct: 111 GYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFG 170

Query: 449 AYVFVGSP 472
           + VFVGSP
Sbjct: 171 SDVFVGSP 178



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 24/81 (29%), Positives = 48/81 (59%)
 Frame = +3

Query: 30  QAKNLHCHILRTSKYPDTFLSNNLINAYSKFKNLTYARNVFDQIPQPNFFSWNTLLSAYS 209
           + K +H +++RT    + F+ + L++ YSK +++  A  VF ++PQ N  SW  +L  Y 
Sbjct: 288 EGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYG 347

Query: 210 KSVWVSEMQELFDRMKVKDGV 272
           ++ +  E  ++F  M+ ++GV
Sbjct: 348 QNGFSEEAVKIFFEMQ-RNGV 367


>ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355522732|gb|AET03186.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  119 bits (299), Expect(2) = 2e-41
 Identities = 55/90 (61%), Positives = 69/90 (76%)
 Frame = +3

Query: 3   LCCETQNHNQAKNLHCHILRTSKYPDTFLSNNLINAYSKFKNLTYARNVFDQIPQPNFFS 182
           LCCET N  +AKNLH HI++T  YP+TFL NNLI++Y+K  ++ YA  VFDQ+P PN +S
Sbjct: 18  LCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYS 77

Query: 183 WNTLLSAYSKSVWVSEMQELFDRMKVKDGV 272
           WNT+LSAYSK   VSEM+ LFD M  +DGV
Sbjct: 78  WNTILSAYSKLGRVSEMEYLFDAMPRRDGV 107



 Score = 74.7 bits (182), Expect(2) = 2e-41
 Identities = 38/69 (55%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
 Frame = +2

Query: 269 GYANCRMGEESVKYYKLMLR-DGSGNLNRITFSTMXXXXXXXXXXXXGKQIHGQILKLGF 445
           GYA C +  +SVK Y LML+ DGS NLNRITFST+            G+QIHG ++K GF
Sbjct: 115 GYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGF 174

Query: 446 QAYVFVGSP 472
            +YVFVGSP
Sbjct: 175 MSYVFVGSP 183



 Score = 50.4 bits (119), Expect(2) = 4e-06
 Identities = 22/79 (27%), Positives = 44/79 (55%)
 Frame = +3

Query: 36  KNLHCHILRTSKYPDTFLSNNLINAYSKFKNLTYARNVFDQIPQPNFFSWNTLLSAYSKS 215
           + +H H+++       F+ + L++ YSK   ++ AR VFD++P+ N   +NTL+    + 
Sbjct: 163 RQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRC 222

Query: 216 VWVSEMQELFDRMKVKDGV 272
             V + + LF  M+ +D +
Sbjct: 223 GRVEDSKRLFFEMRERDSI 241



 Score = 25.0 bits (53), Expect(2) = 4e-06
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +2

Query: 344 LNRITFSTMXXXXXXXXXXXXGKQIHGQILKLGFQAYVFVGS 469
           +++ TF ++            GKQ+H  I++  ++  +FV S
Sbjct: 273 MDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVAS 314


>ref|XP_002314911.1| predicted protein [Populus trichocarpa] gi|222863951|gb|EEF01082.1|
           predicted protein [Populus trichocarpa]
          Length = 743

 Score =  125 bits (314), Expect(2) = 7e-41
 Identities = 59/90 (65%), Positives = 72/90 (80%)
 Frame = +3

Query: 3   LCCETQNHNQAKNLHCHILRTSKYPDTFLSNNLINAYSKFKNLTYARNVFDQIPQPNFFS 182
           LCCET+N  QAK LHC I+++   P+TFL NNLINAYSK  N+TYAR+VFD++PQPN FS
Sbjct: 14  LCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFS 73

Query: 183 WNTLLSAYSKSVWVSEMQELFDRMKVKDGV 272
           WNT+LSAYSKS  +S MQE+F  M  +DGV
Sbjct: 74  WNTMLSAYSKSGDLSTMQEIFSIMPNRDGV 103



 Score = 67.0 bits (162), Expect(2) = 7e-41
 Identities = 34/58 (58%), Positives = 39/58 (67%)
 Frame = +2

Query: 296 ESVKYYKLMLRDGSGNLNRITFSTMXXXXXXXXXXXXGKQIHGQILKLGFQAYVFVGS 469
           E+VK Y  M++DG  NLNRITFSTM            G+QIHGQI+K GF AYVFVGS
Sbjct: 120 EAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGS 177



 Score = 44.7 bits (104), Expect(2) = 8e-06
 Identities = 20/79 (25%), Positives = 44/79 (55%)
 Frame = +3

Query: 36  KNLHCHILRTSKYPDTFLSNNLINAYSKFKNLTYARNVFDQIPQPNFFSWNTLLSAYSKS 215
           + +H  I++       F+ ++L++ Y+K   ++ A  VFD++ + N   +NT+++   +S
Sbjct: 158 RQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRS 217

Query: 216 VWVSEMQELFDRMKVKDGV 272
             V + + LF  MK +D +
Sbjct: 218 GMVKDSKRLFHGMKERDSI 236



 Score = 29.6 bits (65), Expect(2) = 8e-06
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = +2

Query: 296 ESVKYYKLMLRDGSGNLNRITFSTMXXXXXXXXXXXXGKQIHGQILKLGFQAYVFVGS 469
           E++  ++ M ++G   +++ TF ++            GK+IH  I++ G+   VFVGS
Sbjct: 253 EAMDLFRDMRQEGMA-MDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGS 309


>ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
           gi|449493520|ref|XP_004159329.1| PREDICTED: putative
           pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  114 bits (285), Expect(2) = 9e-41
 Identities = 55/95 (57%), Positives = 64/95 (67%)
 Frame = +3

Query: 6   CCETQNHNQAKNLHCHILRTSKYPDTFLSNNLINAYSKFKNLTYARNVFDQIPQPNFFSW 185
           CCE +N  Q K LHC I+RT   P+TFL NNLIN Y K  +L  ARNVFD IPQPN FSW
Sbjct: 15  CCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSW 74

Query: 186 NTLLSAYSKSVWVSEMQELFDRMKVKDGVMRIVEW 290
           NTLLSAYSK  ++ +MQ +FD M   D    +V W
Sbjct: 75  NTLLSAYSKLGYLQDMQRVFDSMPNHD----VVSW 105



 Score = 77.8 bits (190), Expect(2) = 9e-41
 Identities = 38/68 (55%), Positives = 46/68 (67%)
 Frame = +2

Query: 269 GYANCRMGEESVKYYKLMLRDGSGNLNRITFSTMXXXXXXXXXXXXGKQIHGQILKLGFQ 448
           GYA   +  ESV+ Y +ML+DGS NLNRITFSTM            G+QIHGQI K G+Q
Sbjct: 111 GYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQ 170

Query: 449 AYVFVGSP 472
           +Y+FVGSP
Sbjct: 171 SYLFVGSP 178



 Score = 47.0 bits (110), Expect(2) = 1e-06
 Identities = 20/79 (25%), Positives = 43/79 (54%)
 Frame = +3

Query: 36  KNLHCHILRTSKYPDTFLSNNLINAYSKFKNLTYARNVFDQIPQPNFFSWNTLLSAYSKS 215
           + +H  I +       F+ + L++ Y+K   +  A  +F++IP+ N   +NT+++   + 
Sbjct: 158 RQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRC 217

Query: 216 VWVSEMQELFDRMKVKDGV 272
            ++ E ++LFD M  KD +
Sbjct: 218 RFIVEAEQLFDNMPEKDSI 236



 Score = 30.4 bits (67), Expect(2) = 1e-06
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +2

Query: 293 EESVKYYKLMLRDGSGNLNRITFSTMXXXXXXXXXXXXGKQIHGQILKLGFQAYVFVGS 469
           +E+V  +K M  +G   +++ TF ++            GKQIH  I++  +Q  +FVGS
Sbjct: 252 KEAVDKFKEMGIEGFC-MDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGS 309


>ref|XP_002514567.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223546171|gb|EEF47673.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 515

 Score =  115 bits (289), Expect(2) = 4e-39
 Identities = 52/89 (58%), Positives = 68/89 (76%)
 Frame = +3

Query: 6   CCETQNHNQAKNLHCHILRTSKYPDTFLSNNLINAYSKFKNLTYARNVFDQIPQPNFFSW 185
           CCET+N +QAK LHCHI++T   P+ FL NNL+NAY K  N+ YAR++FD +PQ N FSW
Sbjct: 18  CCETRNQSQAKKLHCHIIKTLANPEPFLYNNLMNAYGKLGNIAYARHLFDGMPQRNSFSW 77

Query: 186 NTLLSAYSKSVWVSEMQELFDRMKVKDGV 272
           NT+LSAYSKS  + +M+E+F  M  +DGV
Sbjct: 78  NTILSAYSKSGHLPKMKEIFSLMPNRDGV 106



 Score = 70.9 bits (172), Expect(2) = 4e-39
 Identities = 36/68 (52%), Positives = 42/68 (61%)
 Frame = +2

Query: 269 GYANCRMGEESVKYYKLMLRDGSGNLNRITFSTMXXXXXXXXXXXXGKQIHGQILKLGFQ 448
           GYA+     ++VK Y  M+RDG  NLNRITFSTM            G+QIHG I+K GF 
Sbjct: 114 GYASYGSVSDAVKAYNSMMRDGVFNLNRITFSTMLILASSRELVDLGRQIHGHIMKFGFG 173

Query: 449 AYVFVGSP 472
            YVFVGSP
Sbjct: 174 GYVFVGSP 181



 Score = 43.1 bits (100), Expect(2) = 2e-06
 Identities = 21/79 (26%), Positives = 42/79 (53%)
 Frame = +3

Query: 36  KNLHCHILRTSKYPDTFLSNNLINAYSKFKNLTYARNVFDQIPQPNFFSWNTLLSAYSKS 215
           + +H HI++       F+ + L++ Y+K   +  A+ VFD++P  N    NT+++   K 
Sbjct: 161 RQIHGHIMKFGFGGYVFVGSPLVDMYAKTGLVYEAKKVFDEMPDRNVVMHNTMITGLLKF 220

Query: 216 VWVSEMQELFDRMKVKDGV 272
             + + + LF  MK +D +
Sbjct: 221 GMMEDSKRLFHGMKERDNI 239



 Score = 33.1 bits (74), Expect(2) = 2e-06
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +2

Query: 293 EESVKYYKLMLRDGSGNLNRITFSTMXXXXXXXXXXXXGKQIHGQILKLGFQAYVFVGS 469
           EE++ +++ M  DG G +++ TF ++            GKQ+H  I++      VFVGS
Sbjct: 255 EEAIDFFRQMRLDGIG-MDQYTFGSVLTACGGLTALREGKQVHAFIIRSDCTDNVFVGS 312