BLASTX nr result

ID: Coptis21_contig00031941 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00031941
         (639 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulga...    46   5e-08
ref|XP_002437980.1| hypothetical protein SORBIDRAFT_10g005830 [S...    48   9e-07
ref|XP_002451277.1| hypothetical protein SORBIDRAFT_05g026830 [S...    44   1e-06
ref|XP_002452122.1| hypothetical protein SORBIDRAFT_04g020080 [S...    42   2e-06
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...    57   3e-06

>emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1365

 Score = 45.8 bits (107), Expect(2) = 5e-08
 Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
 Frame = -2

Query: 347  CSHGLDSQLHIFTRCEFAKVLWVGGILE----PLLAIHGDSFQSWFRQALTALFRKSTDT 180
            C    +++ H+F  C  ++ +W   +L     P+  I   S + W +  L  L+++    
Sbjct: 1098 CKQDKENESHLFRDCNISRHVWASSLLGIRICPMTVI---SIEDWIKNFLKLLWKEDGVK 1154

Query: 179  FFLLDHFGVTLWQIWIS*NASQFSTDKLNPLSLL 78
               +  F  TLW IWI  N   F ++++NP++++
Sbjct: 1155 SPRVSEFIATLWAIWIHRNNVIFRSEEVNPVAIM 1188



 Score = 37.0 bits (84), Expect(2) = 5e-08
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = -1

Query: 579  IWACHRSAEYTVKS--AYNLLWDGIFPSLKIEQPLLVKIWKSKLLFKIRFFLWQCYHGLI 406
            +W+  +S    VK   A+ LL  G   + K  +    K W S LL K +FF W+  +  +
Sbjct: 1019 VWSESKSGVPRVKDIYAFYLLDKGELNTTKENRQFWNKFWASDLLPKWKFFTWRLLNKAL 1078

Query: 405  PTASFLAHRGFQVNNSCTM 349
             T+S L  R   +   C++
Sbjct: 1079 ATSSNLRKRNILIQEMCSL 1097


>ref|XP_002437980.1| hypothetical protein SORBIDRAFT_10g005830 [Sorghum bicolor]
           gi|241916203|gb|EER89347.1| hypothetical protein
           SORBIDRAFT_10g005830 [Sorghum bicolor]
          Length = 263

 Score = 47.8 bits (112), Expect(2) = 9e-07
 Identities = 30/81 (37%), Positives = 42/81 (51%)
 Frame = -1

Query: 585 QLIWACHRSAEYTVKSAYNLLWDGIFPSLKIEQPLLVKIWKSKLLFKIRFFLWQCYHGLI 406
           Q+ W    S +YT KSAYN+ + G   S+    P LV  WK+    K +FFLW      I
Sbjct: 69  QIHWKLESSGKYTAKSAYNIQFSG---SILSNSPKLV--WKAWAPPKCKFFLWLLLQDRI 123

Query: 405 PTASFLAHRGFQVNNSCTMVL 343
            TA+ L  RG++ N  C + +
Sbjct: 124 WTAARLQVRGWENNYFCGLCI 144



 Score = 30.8 bits (68), Expect(2) = 9e-07
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 7/101 (6%)
 Frame = -2

Query: 347 CSHGLDSQLHIFTRCEFAKVLWVG-------GILEPLLAIHGDSFQSWFRQALTALFRKS 189
           C   L + +H+F  C F+  +W         G L+P+        + WF + +     K+
Sbjct: 143 CIRNLKTAMHLFVECPFSCCVWEQVADWSNCGNLQPVQWGTTADVEEWFLKMIEQ-GNKT 201

Query: 188 TDTFFLLDHFGVTLWQIWIS*NASQFSTDKLNPLSLLYSVR 66
             T  +L     T W IW   NA+ F  +   P  +   ++
Sbjct: 202 AHTLAIL-----TAWCIWNQRNAAIFRNEISTPAQVCSRIK 237


>ref|XP_002451277.1| hypothetical protein SORBIDRAFT_05g026830 [Sorghum bicolor]
           gi|241937120|gb|EES10265.1| hypothetical protein
           SORBIDRAFT_05g026830 [Sorghum bicolor]
          Length = 455

 Score = 43.5 bits (101), Expect(2) = 1e-06
 Identities = 27/78 (34%), Positives = 39/78 (50%)
 Frame = -1

Query: 582 LIWACHRSAEYTVKSAYNLLWDGIFPSLKIEQPLLVKIWKSKLLFKIRFFLWQCYHGLIP 403
           +IW    S EY+ KSAY + + G    L+   P+L  IWK+    K  FFLW      + 
Sbjct: 263 IIWTLESSGEYSAKSAYTIQFAG---HLQSAHPVL--IWKAWAPPKCNFFLWLLLQDRLW 317

Query: 402 TASFLAHRGFQVNNSCTM 349
           TA+ L  R ++ N  C +
Sbjct: 318 TAARLLRRQWENNYFCAL 335



 Score = 34.3 bits (77), Expect(2) = 1e-06
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 7/101 (6%)
 Frame = -2

Query: 347 CSHGLDSQLHIFTRCEFAKVLW-------VGGILEPLLAIHGDSFQSWFRQALTALFRKS 189
           C   L++  H+F  C +++++W           L P         + WF Q L +  +KS
Sbjct: 336 CERNLETAHHLFFECPYSRLVWQLVASWSSCSSLHPANWEVKHELEDWFSQMLASGGKKS 395

Query: 188 TDTFFLLDHFGVTLWQIWIS*NASQFSTDKLNPLSLLYSVR 66
                L      TLW IW   NA  F  +     +LL  ++
Sbjct: 396 HTLAIL------TLWSIWNRRNAVIFRQEWRTAHALLIEIK 430


>ref|XP_002452122.1| hypothetical protein SORBIDRAFT_04g020080 [Sorghum bicolor]
           gi|241931953|gb|EES05098.1| hypothetical protein
           SORBIDRAFT_04g020080 [Sorghum bicolor]
          Length = 377

 Score = 42.0 bits (97), Expect(2) = 2e-06
 Identities = 24/78 (30%), Positives = 38/78 (48%)
 Frame = -1

Query: 582 LIWACHRSAEYTVKSAYNLLWDGIFPSLKIEQPLLVKIWKSKLLFKIRFFLWQCYHGLIP 403
           +IW    S EY+ KSAY + + G      ++   LV IWK+    K + FLW+     + 
Sbjct: 185 IIWTIESSGEYSAKSAYTIQFAG-----HLQSAHLVLIWKAWAPPKCKSFLWRLLQDRLW 239

Query: 402 TASFLAHRGFQVNNSCTM 349
           T + L  R ++ N  C +
Sbjct: 240 TVARLLRRQWENNYFCAL 257



 Score = 35.4 bits (80), Expect(2) = 2e-06
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 14/124 (11%)
 Frame = -2

Query: 347 CSHGLDSQLHIFTRCEFAKVLW-------VGGILEPLLAIHGDSFQSWFRQALTALFRKS 189
           C   L++  H+F  C +++++W           L P         + WF Q L +  +KS
Sbjct: 258 CERNLETAHHLFFECPYSRLVWQLVASWSSCSSLHPANWEVKHELEDWFSQMLASGGKKS 317

Query: 188 TDTFFLLDHFGVTLWQIWIS*NASQFSTDKLNPLSLLYSVRHLI-------ANIISSEFG 30
                L      TLW IW   NA  F  +     +LL  ++           +++ S F 
Sbjct: 318 HTLAIL------TLWSIWNRRNAVVFRQEWRTARALLIEIKDTAHQWSLAGGSVLQSLFV 371

Query: 29  KHIL 18
            HI+
Sbjct: 372 VHII 375


>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1715

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 12/128 (9%)
 Frame = -1

Query: 627  ADPFYFSRVYSSR*QLIWACHRSAEYTVKSAY------NLLWDGIFPSLKIEQPLLVKIW 466
            A   Y S  Y++R    WA  R+ +YTV+S Y      NL  + I   L+ + PL  +IW
Sbjct: 1331 AKSLYLSN-YAARDSYKWAYTRNTQYTVRSGYWVATHVNLTEEEIINPLEGDVPLKQEIW 1389

Query: 465  KSKLLFKIRFFLWQCYHGLIPTASFLAHRGFQVNNSCTM------VLSWVGFSTSYFYAV 304
            + K+  KI+ F+W+C  G + T + L +R    + +C         ++ + F+ SY   V
Sbjct: 1390 RLKITPKIKHFIWRCLSGALSTTTQLRNRNIPADPTCQRCCNADETINHIIFTCSYAQVV 1449

Query: 303  *ICKSFMG 280
                +F G
Sbjct: 1450 WRSANFSG 1457


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