BLASTX nr result
ID: Coptis21_contig00031941
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00031941
(639 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulga... 46 5e-08
ref|XP_002437980.1| hypothetical protein SORBIDRAFT_10g005830 [S... 48 9e-07
ref|XP_002451277.1| hypothetical protein SORBIDRAFT_05g026830 [S... 44 1e-06
ref|XP_002452122.1| hypothetical protein SORBIDRAFT_04g020080 [S... 42 2e-06
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 57 3e-06
>emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1365
Score = 45.8 bits (107), Expect(2) = 5e-08
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Frame = -2
Query: 347 CSHGLDSQLHIFTRCEFAKVLWVGGILE----PLLAIHGDSFQSWFRQALTALFRKSTDT 180
C +++ H+F C ++ +W +L P+ I S + W + L L+++
Sbjct: 1098 CKQDKENESHLFRDCNISRHVWASSLLGIRICPMTVI---SIEDWIKNFLKLLWKEDGVK 1154
Query: 179 FFLLDHFGVTLWQIWIS*NASQFSTDKLNPLSLL 78
+ F TLW IWI N F ++++NP++++
Sbjct: 1155 SPRVSEFIATLWAIWIHRNNVIFRSEEVNPVAIM 1188
Score = 37.0 bits (84), Expect(2) = 5e-08
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = -1
Query: 579 IWACHRSAEYTVKS--AYNLLWDGIFPSLKIEQPLLVKIWKSKLLFKIRFFLWQCYHGLI 406
+W+ +S VK A+ LL G + K + K W S LL K +FF W+ + +
Sbjct: 1019 VWSESKSGVPRVKDIYAFYLLDKGELNTTKENRQFWNKFWASDLLPKWKFFTWRLLNKAL 1078
Query: 405 PTASFLAHRGFQVNNSCTM 349
T+S L R + C++
Sbjct: 1079 ATSSNLRKRNILIQEMCSL 1097
>ref|XP_002437980.1| hypothetical protein SORBIDRAFT_10g005830 [Sorghum bicolor]
gi|241916203|gb|EER89347.1| hypothetical protein
SORBIDRAFT_10g005830 [Sorghum bicolor]
Length = 263
Score = 47.8 bits (112), Expect(2) = 9e-07
Identities = 30/81 (37%), Positives = 42/81 (51%)
Frame = -1
Query: 585 QLIWACHRSAEYTVKSAYNLLWDGIFPSLKIEQPLLVKIWKSKLLFKIRFFLWQCYHGLI 406
Q+ W S +YT KSAYN+ + G S+ P LV WK+ K +FFLW I
Sbjct: 69 QIHWKLESSGKYTAKSAYNIQFSG---SILSNSPKLV--WKAWAPPKCKFFLWLLLQDRI 123
Query: 405 PTASFLAHRGFQVNNSCTMVL 343
TA+ L RG++ N C + +
Sbjct: 124 WTAARLQVRGWENNYFCGLCI 144
Score = 30.8 bits (68), Expect(2) = 9e-07
Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 7/101 (6%)
Frame = -2
Query: 347 CSHGLDSQLHIFTRCEFAKVLWVG-------GILEPLLAIHGDSFQSWFRQALTALFRKS 189
C L + +H+F C F+ +W G L+P+ + WF + + K+
Sbjct: 143 CIRNLKTAMHLFVECPFSCCVWEQVADWSNCGNLQPVQWGTTADVEEWFLKMIEQ-GNKT 201
Query: 188 TDTFFLLDHFGVTLWQIWIS*NASQFSTDKLNPLSLLYSVR 66
T +L T W IW NA+ F + P + ++
Sbjct: 202 AHTLAIL-----TAWCIWNQRNAAIFRNEISTPAQVCSRIK 237
>ref|XP_002451277.1| hypothetical protein SORBIDRAFT_05g026830 [Sorghum bicolor]
gi|241937120|gb|EES10265.1| hypothetical protein
SORBIDRAFT_05g026830 [Sorghum bicolor]
Length = 455
Score = 43.5 bits (101), Expect(2) = 1e-06
Identities = 27/78 (34%), Positives = 39/78 (50%)
Frame = -1
Query: 582 LIWACHRSAEYTVKSAYNLLWDGIFPSLKIEQPLLVKIWKSKLLFKIRFFLWQCYHGLIP 403
+IW S EY+ KSAY + + G L+ P+L IWK+ K FFLW +
Sbjct: 263 IIWTLESSGEYSAKSAYTIQFAG---HLQSAHPVL--IWKAWAPPKCNFFLWLLLQDRLW 317
Query: 402 TASFLAHRGFQVNNSCTM 349
TA+ L R ++ N C +
Sbjct: 318 TAARLLRRQWENNYFCAL 335
Score = 34.3 bits (77), Expect(2) = 1e-06
Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 7/101 (6%)
Frame = -2
Query: 347 CSHGLDSQLHIFTRCEFAKVLW-------VGGILEPLLAIHGDSFQSWFRQALTALFRKS 189
C L++ H+F C +++++W L P + WF Q L + +KS
Sbjct: 336 CERNLETAHHLFFECPYSRLVWQLVASWSSCSSLHPANWEVKHELEDWFSQMLASGGKKS 395
Query: 188 TDTFFLLDHFGVTLWQIWIS*NASQFSTDKLNPLSLLYSVR 66
L TLW IW NA F + +LL ++
Sbjct: 396 HTLAIL------TLWSIWNRRNAVIFRQEWRTAHALLIEIK 430
>ref|XP_002452122.1| hypothetical protein SORBIDRAFT_04g020080 [Sorghum bicolor]
gi|241931953|gb|EES05098.1| hypothetical protein
SORBIDRAFT_04g020080 [Sorghum bicolor]
Length = 377
Score = 42.0 bits (97), Expect(2) = 2e-06
Identities = 24/78 (30%), Positives = 38/78 (48%)
Frame = -1
Query: 582 LIWACHRSAEYTVKSAYNLLWDGIFPSLKIEQPLLVKIWKSKLLFKIRFFLWQCYHGLIP 403
+IW S EY+ KSAY + + G ++ LV IWK+ K + FLW+ +
Sbjct: 185 IIWTIESSGEYSAKSAYTIQFAG-----HLQSAHLVLIWKAWAPPKCKSFLWRLLQDRLW 239
Query: 402 TASFLAHRGFQVNNSCTM 349
T + L R ++ N C +
Sbjct: 240 TVARLLRRQWENNYFCAL 257
Score = 35.4 bits (80), Expect(2) = 2e-06
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 14/124 (11%)
Frame = -2
Query: 347 CSHGLDSQLHIFTRCEFAKVLW-------VGGILEPLLAIHGDSFQSWFRQALTALFRKS 189
C L++ H+F C +++++W L P + WF Q L + +KS
Sbjct: 258 CERNLETAHHLFFECPYSRLVWQLVASWSSCSSLHPANWEVKHELEDWFSQMLASGGKKS 317
Query: 188 TDTFFLLDHFGVTLWQIWIS*NASQFSTDKLNPLSLLYSVRHLI-------ANIISSEFG 30
L TLW IW NA F + +LL ++ +++ S F
Sbjct: 318 HTLAIL------TLWSIWNRRNAVVFRQEWRTARALLIEIKDTAHQWSLAGGSVLQSLFV 371
Query: 29 KHIL 18
HI+
Sbjct: 372 VHII 375
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1715
Score = 57.0 bits (136), Expect = 3e-06
Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 12/128 (9%)
Frame = -1
Query: 627 ADPFYFSRVYSSR*QLIWACHRSAEYTVKSAY------NLLWDGIFPSLKIEQPLLVKIW 466
A Y S Y++R WA R+ +YTV+S Y NL + I L+ + PL +IW
Sbjct: 1331 AKSLYLSN-YAARDSYKWAYTRNTQYTVRSGYWVATHVNLTEEEIINPLEGDVPLKQEIW 1389
Query: 465 KSKLLFKIRFFLWQCYHGLIPTASFLAHRGFQVNNSCTM------VLSWVGFSTSYFYAV 304
+ K+ KI+ F+W+C G + T + L +R + +C ++ + F+ SY V
Sbjct: 1390 RLKITPKIKHFIWRCLSGALSTTTQLRNRNIPADPTCQRCCNADETINHIIFTCSYAQVV 1449
Query: 303 *ICKSFMG 280
+F G
Sbjct: 1450 WRSANFSG 1457