BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00031901
         (657 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_005090455.1| ribosomal protein S3 (mitochondrion) [Millet...   275   4e-75
gb|ADL63879.1| ribosomal protein S3 [Hydrastis canadensis]            278   4e-75
gb|ADL63860.1| ribosomal protein S3 [Glaucidium palmatum]             278   5e-75
ref|YP_005090476.1| ribosomal protein S3 (mitochondrion) [Lotus ...   272   2e-74
gb|ADL63743.1| ribosomal protein S3 [Albizia julibrissin]             275   2e-74

>ref|YP_005090455.1| ribosomal protein S3 (mitochondrion) [Millettia pinnata]
           gi|357197318|gb|AET62915.1| ribosomal protein S3
           (mitochondrion) [Millettia pinnata]
          Length = 565

 Score =  275 bits (702), Expect(2) = 4e-75
 Identities = 142/165 (86%), Positives = 150/165 (90%), Gaps = 3/165 (1%)
 Frame = -1

Query: 657 PGLAEPSTMGGANEQGRSLDKRIRSRIAFFVESSTSEKKCLAEAKKRLTHFIRLANDLRF 478
           PG+AEPSTMGGAN QGRSLDKRIRSRIAFFVESSTSEKKCLAEAKKRLTHFIRLANDLRF
Sbjct: 264 PGVAEPSTMGGANAQGRSLDKRIRSRIAFFVESSTSEKKCLAEAKKRLTHFIRLANDLRF 323

Query: 477 AGTTKTTISLFPFSGATFFFLRDRVGV-NYKPFFFKRAR--LLGRLRSQCWNVMGKEKVM 307
           AGTTKTTISLFPF GATFFFLRDRVG+ N    FF+ AR  LLG+LR +CWN+MGK+KVM
Sbjct: 324 AGTTKTTISLFPFFGATFFFLRDRVGISNNHNLFFEDAREPLLGKLRIKCWNLMGKDKVM 383

Query: 306 ELIDKFIDLGGIGEWIKGIEMMIEIILRKRIIPYGYNSYLNEVQK 172
           ELI+KFIDLG IGEWIKGIEMMIEIILR R IPYGYNSYLNEV K
Sbjct: 384 ELIEKFIDLGRIGEWIKGIEMMIEIILRNRRIPYGYNSYLNEVIK 428



 Score = 33.1 bits (74), Expect(2) = 4e-75
 Identities = 20/37 (54%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = -2

Query: 152 RTNTNTLIEPVKINLL--SSAL*CSDISFXENKQDHS 48
           RTNTNTLIE VKI  +  S++L   DISF   K+  S
Sbjct: 436 RTNTNTLIESVKIQSVYQSASLIAQDISFQLRKKTRS 472


>gb|ADL63879.1| ribosomal protein S3 [Hydrastis canadensis]
          Length = 469

 Score =  278 bits (712), Expect(2) = 4e-75
 Identities = 144/164 (87%), Positives = 150/164 (91%), Gaps = 2/164 (1%)
 Frame = -1

Query: 657 PGLAEPSTMGGANEQGRSLDKRIRSRIAFFVESSTSEKKCLAEAKKRLTHFIRLANDLRF 478
           PG+AEPSTMGGANEQGRSLDKRIRSRIAFFVESSTSEKKCLAEAKKRLTHFIR ANDLRF
Sbjct: 195 PGVAEPSTMGGANEQGRSLDKRIRSRIAFFVESSTSEKKCLAEAKKRLTHFIRQANDLRF 254

Query: 477 AGTTKTTISLFPFSGATFFFLRDRVGVNYKPFFFKRAR--LLGRLRSQCWNVMGKEKVME 304
           AGTTKTTISLFPF GATFFF RD VGV Y   FF+ AR  LLG+LR QCWN+MGKEKVME
Sbjct: 255 AGTTKTTISLFPFFGATFFFPRDGVGV-YNNLFFEDAREQLLGQLRIQCWNLMGKEKVME 313

Query: 303 LIDKFIDLGGIGEWIKGIEMMIEIILRKRIIPYGYNSYLNEVQK 172
            I+KFIDLGGIGEWIKGIEMMIEIILRKR IPYGYNSYLNEV+K
Sbjct: 314 FIEKFIDLGGIGEWIKGIEMMIEIILRKRRIPYGYNSYLNEVKK 357



 Score = 29.3 bits (64), Expect(2) = 4e-75
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 152 RTNTNTLIEPVKINLL--SSAL*CSDISFXENKQDHS 48
           RTNTNTLIE VKI  +  S++    DISF    +  S
Sbjct: 365 RTNTNTLIESVKIQSVYQSASPIAQDISFQPRNKTRS 401


>gb|ADL63860.1| ribosomal protein S3 [Glaucidium palmatum]
          Length = 485

 Score =  278 bits (711), Expect(2) = 5e-75
 Identities = 144/164 (87%), Positives = 150/164 (91%), Gaps = 2/164 (1%)
 Frame = -1

Query: 657 PGLAEPSTMGGANEQGRSLDKRIRSRIAFFVESSTSEKKCLAEAKKRLTHFIRLANDLRF 478
           PG+AEPSTMGGANEQGRSLDKRIRSRIAFFVESSTS+KKCLAEAKKRLTHFIRLANDLRF
Sbjct: 191 PGVAEPSTMGGANEQGRSLDKRIRSRIAFFVESSTSDKKCLAEAKKRLTHFIRLANDLRF 250

Query: 477 AGTTKTTISLFPFSGATFFFLRDRVGVNYKPFFFKRAR--LLGRLRSQCWNVMGKEKVME 304
           AGTTKTTISLFPF GATFFF RD V   Y   FF+ AR  LLG+LR QCWN+MGKEKVME
Sbjct: 251 AGTTKTTISLFPFFGATFFFPRDGV---YNNLFFEDAREQLLGQLRIQCWNLMGKEKVME 307

Query: 303 LIDKFIDLGGIGEWIKGIEMMIEIILRKRIIPYGYNSYLNEVQK 172
           LIDKFIDLGGIGEWIKGIEMMIEIILRKR IPYGYNSYLNEV+K
Sbjct: 308 LIDKFIDLGGIGEWIKGIEMMIEIILRKRRIPYGYNSYLNEVKK 351



 Score = 29.3 bits (64), Expect(2) = 5e-75
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 152 RTNTNTLIEPVKINLL--SSAL*CSDISFXENKQDHS 48
           RTNTNTLIE VKI  +  S++    DISF    +  S
Sbjct: 359 RTNTNTLIESVKIKSVYQSASPIAQDISFQPRNKTRS 395


>ref|YP_005090476.1| ribosomal protein S3 (mitochondrion) [Lotus japonicus]
           gi|357197340|gb|AET62936.1| ribosomal protein S3
           (mitochondrion) [Lotus japonicus]
          Length = 563

 Score =  272 bits (696), Expect(2) = 2e-74
 Identities = 140/164 (85%), Positives = 149/164 (90%), Gaps = 2/164 (1%)
 Frame = -1

Query: 657 PGLAEPSTMGGANEQGRSLDKRIRSRIAFFVESSTSEKKCLAEAKKRLTHFIRLANDLRF 478
           PG+AEPSTM GAN QGRSLD RIRSRIAFFVESSTSEKKCLAEAKKRLTHFIRLANDLRF
Sbjct: 264 PGVAEPSTMRGANAQGRSLDNRIRSRIAFFVESSTSEKKCLAEAKKRLTHFIRLANDLRF 323

Query: 477 AGTTKTTISLFPFSGATFFFLRDRVGVNYKPFFFKRAR--LLGRLRSQCWNVMGKEKVME 304
           AGTTKTTISLFPF GATFFFLRDRVG+ Y   FF+ AR  LLG+LR +CWN+MGK+KVME
Sbjct: 324 AGTTKTTISLFPFFGATFFFLRDRVGI-YNHLFFEDAREPLLGQLRIKCWNLMGKDKVME 382

Query: 303 LIDKFIDLGGIGEWIKGIEMMIEIILRKRIIPYGYNSYLNEVQK 172
           LI+KFIDLG IGEWIKGIEMMIEIILR R IPYGYNSYLNEV+K
Sbjct: 383 LIEKFIDLGRIGEWIKGIEMMIEIILRNRRIPYGYNSYLNEVKK 426



 Score = 33.1 bits (74), Expect(2) = 2e-74
 Identities = 20/37 (54%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = -2

Query: 152 RTNTNTLIEPVKINLL--SSAL*CSDISFXENKQDHS 48
           RTNTNTLIE VKI  +  S++L   DISF   K+  S
Sbjct: 434 RTNTNTLIESVKIKSVYQSASLIAQDISFQLRKKTRS 470


>gb|ADL63743.1| ribosomal protein S3 [Albizia julibrissin]
          Length = 494

 Score =  275 bits (702), Expect(2) = 2e-74
 Identities = 141/164 (85%), Positives = 150/164 (91%), Gaps = 2/164 (1%)
 Frame = -1

Query: 657 PGLAEPSTMGGANEQGRSLDKRIRSRIAFFVESSTSEKKCLAEAKKRLTHFIRLANDLRF 478
           PG+AEPSTMGGAN QGRSLDKRIRSRIAFFVESST+EKKCLAEAKKRLTHFIRLANDLRF
Sbjct: 205 PGVAEPSTMGGANAQGRSLDKRIRSRIAFFVESSTTEKKCLAEAKKRLTHFIRLANDLRF 264

Query: 477 AGTTKTTISLFPFSGATFFFLRDRVGVNYKPFFFKRAR--LLGRLRSQCWNVMGKEKVME 304
           AGTTKTTISLFPF GATFFF RDRVG+ YK  FF+ AR  LLG+LR +CWN+MGK+KVME
Sbjct: 265 AGTTKTTISLFPFFGATFFFPRDRVGI-YKNLFFEDAREPLLGQLRIKCWNLMGKDKVME 323

Query: 303 LIDKFIDLGGIGEWIKGIEMMIEIILRKRIIPYGYNSYLNEVQK 172
           LIDK IDLG IGEWIKGIEMMIEIILR R IPYGYNSYLNEV+K
Sbjct: 324 LIDKLIDLGRIGEWIKGIEMMIEIILRNRKIPYGYNSYLNEVKK 367



 Score = 30.4 bits (67), Expect(2) = 2e-74
 Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -2

Query: 152 RTNTNTLIEPVKINLL--SSAL*CSDISFXENKQDHS 48
           RTNTNTLIE VKI  +  S++    DISF   K+  S
Sbjct: 375 RTNTNTLIESVKIKSVYQSASPIAQDISFQLRKKTRS 411