BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00031865
         (324 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|2...    91   8e-17
ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [...    88   8e-16
dbj|BAA88921.1| sigma factor [Nicotiana tabacum]                       80   1e-13
dbj|BAA22214.1| plastid RNA polymerase sigma-subunit [Arabidopsi...    79   5e-13
ref|NP_001185314.1| sigma factor A [Arabidopsis thaliana] gi|332...    79   5e-13

>ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|222862757|gb|EEF00264.1|
           predicted protein [Populus trichocarpa]
          Length = 509

 Score = 91.3 bits (225), Expect = 8e-17
 Identities = 47/76 (61%), Positives = 62/76 (81%), Gaps = 1/76 (1%)
 Frame = -2

Query: 227 MMATAAVIGLSAGKTFLSSSIYYSDVADKLYSVHDHGLIQHQTVSTKNVISAKKSTHFGS 48
           MMATAAVIGLS+GK  LSSS YYSD+ +KL +V+DHG+  + T +TKNVI AKKS+++G 
Sbjct: 1   MMATAAVIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGITYYPTATTKNVIVAKKSSNYGP 60

Query: 47  SSP-SDRHAQAIKALK 3
           S P S+R++ +IKALK
Sbjct: 61  SFPSSNRNSHSIKALK 76


>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 508

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 46/75 (61%), Positives = 59/75 (78%), Gaps = 1/75 (1%)
 Frame = -2

Query: 224 MATAAVIGLSAGKTFLSSSIYYSDVADKLYSVHDHGLIQHQTVSTKNVISAKKSTHFGSS 45
           MATAAVIGLSAGK  LSS+ YYSD+ +KL S ++HGL  +Q  STK +I AKKS+++G S
Sbjct: 1   MATAAVIGLSAGKRLLSSTFYYSDLTEKLSSANEHGLTHYQITSTKTLIVAKKSSNYGPS 60

Query: 44  SP-SDRHAQAIKALK 3
            P S+R+ Q+IKALK
Sbjct: 61  FPSSNRNTQSIKALK 75


>dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
          Length = 508

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 43/75 (57%), Positives = 52/75 (69%)
 Frame = -2

Query: 227 MMATAAVIGLSAGKTFLSSSIYYSDVADKLYSVHDHGLIQHQTVSTKNVISAKKSTHFGS 48
           MM+TAAVIGLSAGK  LSSS YYSD+ +KL    DH L  H   S KNVI+AKKS+ +  
Sbjct: 1   MMSTAAVIGLSAGKRLLSSSFYYSDLNEKLTCTSDHSLPCHHVPSIKNVITAKKSSDYSP 60

Query: 47  SSPSDRHAQAIKALK 3
           S  S R +Q+ K+LK
Sbjct: 61  SCVSSRKSQSAKSLK 75


>dbj|BAA22214.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
          Length = 502

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 42/75 (56%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
 Frame = -2

Query: 224 MATAAVIGLSAGKTFLSSSIYYSDVADKLYSVHDHGLIQHQTVSTKNVISAKKSTHFGSS 45
           MATAAVIGL+ GK  LSSS Y+SDV +K  SV+DH   Q+   STK+ I+AKK++++  S
Sbjct: 1   MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60

Query: 44  SP-SDRHAQAIKALK 3
            P S+RH Q+ KALK
Sbjct: 61  FPSSNRHTQSAKALK 75


>ref|NP_001185314.1| sigma factor A [Arabidopsis thaliana] gi|332196178|gb|AEE34299.1|
           sigma factor A [Arabidopsis thaliana]
          Length = 498

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 42/75 (56%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
 Frame = -2

Query: 224 MATAAVIGLSAGKTFLSSSIYYSDVADKLYSVHDHGLIQHQTVSTKNVISAKKSTHFGSS 45
           MATAAVIGL+ GK  LSSS Y+SDV +K  SV+DH   Q+   STK+ I+AKK++++  S
Sbjct: 1   MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60

Query: 44  SP-SDRHAQAIKALK 3
            P S+RH Q+ KALK
Sbjct: 61  FPSSNRHTQSAKALK 75