BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00031834
         (646 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...   199   3e-49
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...   187   1e-45
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...   177   1e-42
gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...   161   8e-38
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...   146   3e-33

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score =  199 bits (507), Expect = 3e-49
 Identities = 100/215 (46%), Positives = 144/215 (66%)
 Frame = +1

Query: 1    PICLSNFVFKIITKILATRLSPIAERIISKEQYGFIPNRNSQQAIGLASELINELQTPRY 180
            PI L+NF FKII+KILA RL+ I  RIIS EQ GFI +R+  + + LASE IN L+  +Y
Sbjct: 520  PIALANFQFKIISKILADRLADITMRIISVEQRGFIRDRDISKCVILASEAINLLEKRQY 579

Query: 181  GGSAAVKIDISQAFDTMDWEFLWAVLYHVGFCEVWIQWLKGAFSSNSMSILLNGGPKGFF 360
            GG+ A+K+DI++AFDT+DW FL AVL   GF E ++ W+     S  +S+L+NG   GFF
Sbjct: 580  GGNVALKVDIAKAFDTLDWNFLLAVLQRFGFDEKFVHWILVILQSARLSVLVNGKAVGFF 639

Query: 361  SAERGLKQGDPLSPMLFALAEDCLSRNISKLVQEKKIMPMVRNSKYSSPSHLMFADDIFL 540
            +   G++QGDPLSP+LF L E+ LSR +S    + +++PM      S P+H+++ADD+ +
Sbjct: 640  TCSHGVRQGDPLSPLLFCLVEEVLSRALSMAATDGQLIPMSYCRGVSFPTHILYADDVLI 699

Query: 541  FSNANLRYIKHMIKILNRSQDSSGQVINKDKCKLF 645
            F     R I+ +IKI ++  + SGQ+IN  K + F
Sbjct: 700  FCTGTKRNIRRLIKIFSQYSEVSGQLINNAKSRFF 734


>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score =  187 bits (475), Expect = 1e-45
 Identities = 91/186 (48%), Positives = 126/186 (67%)
 Frame = +1

Query: 1   PICLSNFVFKIITKILATRLSPIAERIISKEQYGFIPNRNSQQAIGLASELINELQTPRY 180
           PI ++NF FKII+KILA RL+ I   I+S+EQ GFI  RN +  + LASE IN L    +
Sbjct: 194 PIAMANFKFKIISKILADRLAQIMPNIVSQEQRGFIQGRNIKDCVCLASEAINMLDQKSF 253

Query: 181 GGSAAVKIDISQAFDTMDWEFLWAVLYHVGFCEVWIQWLKGAFSSNSMSILLNGGPKGFF 360
           GG+ A K+DIS+AFDT++W+FL  VL   GF E +  W+     S  +SI +NG  +G+F
Sbjct: 254 GGNLAFKVDISKAFDTLNWKFLLKVLKQFGFSETFCNWIDAILQSAKLSICINGSQQGYF 313

Query: 361 SAERGLKQGDPLSPMLFALAEDCLSRNISKLVQEKKIMPMVRNSKYSSPSHLMFADDIFL 540
           S  RG++QGDPLSP+LF LAED LSR+++KLV++ K+  M        PSH+++ADDI +
Sbjct: 314 SCSRGVRQGDPLSPLLFCLAEDVLSRSLTKLVEQGKLKQMRGTRNCLVPSHILYADDIMI 373

Query: 541 FSNANL 558
           F N  +
Sbjct: 374 FCNGGI 379


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score =  177 bits (449), Expect = 1e-42
 Identities = 92/214 (42%), Positives = 130/214 (60%)
 Frame = +1

Query: 4   ICLSNFVFKIITKILATRLSPIAERIISKEQYGFIPNRNSQQAIGLASELINELQTPRYG 183
           I L NF FKII K+LA RL+ I   IISKEQ GF+  RN +  I L SE IN L    +G
Sbjct: 256 IALVNFKFKIINKVLADRLAKILPSIISKEQRGFVQGRNIRDCIALTSEAINVLDNKSFG 315

Query: 184 GSAAVKIDISQAFDTMDWEFLWAVLYHVGFCEVWIQWLKGAFSSNSMSILLNGGPKGFFS 363
           G+ A+KID+++AFDT++W+FL  VL   GF E++  W+K    S+ M I +NG   GFF+
Sbjct: 316 GNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTILHSSKMFISMNGAQHGFFN 375

Query: 364 AERGLKQGDPLSPMLFALAEDCLSRNISKLVQEKKIMPMVRNSKYSSPSHLMFADDIFLF 543
             RG++QGDPLSP+LF + E+ LSR+IS L  +  I  +  +     P H  + DD+ +F
Sbjct: 376 CNRGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAASRNNCLPFHCFYVDDLMVF 435

Query: 544 SNANLRYIKHMIKILNRSQDSSGQVINKDKCKLF 645
             A +  +  +  +  R  D SGQ++N  K  +F
Sbjct: 436 CKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFIF 469


>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score =  161 bits (408), Expect = 8e-38
 Identities = 85/217 (39%), Positives = 129/217 (59%), Gaps = 2/217 (0%)
 Frame = +1

Query: 1    PICLSNFVFKIITKILATRLSPIAERIISKEQYGFIPNRNSQQAIGLASELINELQTPRY 180
            PI L NF +KI+TKI+A+RL P    +IS  Q  F+ NR  Q  + +A E+ + L+  R 
Sbjct: 1115 PIALCNFSYKILTKIIASRLQPFMSELISDNQSAFVSNRQIQDNVIIAHEIYHHLKLTRS 1174

Query: 181  --GGSAAVKIDISQAFDTMDWEFLWAVLYHVGFCEVWIQWLKGAFSSNSMSILLNGGPKG 354
               G+  +K+D+++A+D ++W FL AVL  +GF + WI  +    +++S+S+L+NG P  
Sbjct: 1175 CNNGAFGLKLDMNKAYDRVEWNFLEAVLRKMGFVDSWIGLVMSCVTTSSLSVLINGKPGP 1234

Query: 355  FFSAERGLKQGDPLSPMLFALAEDCLSRNISKLVQEKKIMPMVRNSKYSSPSHLMFADDI 534
             F   RGL+QGDPLSP LF    D LSR I+K+ Q+  + P+         SHL FADD 
Sbjct: 1235 SFLPSRGLRQGDPLSPFLFLFVNDVLSRMINKMCQDSLLTPVTIGPNNLPVSHLFFADDS 1294

Query: 535  FLFSNANLRYIKHMIKILNRSQDSSGQVINKDKCKLF 645
              F  A L+  + +  +L+    +SGQ+IN +K  +F
Sbjct: 1295 LFFLRATLQNCETLSDLLHTYCIASGQLINVEKSSIF 1331


>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score =  146 bits (369), Expect = 3e-33
 Identities = 81/216 (37%), Positives = 120/216 (55%), Gaps = 2/216 (0%)
 Frame = +1

Query: 1   PICLSNFVFKIITKILATRLSPIAERIISKEQYGFIPNRNSQQAIGLASELINELQTPRY 180
           PI L N  +K+I+KIL  RL  +   +IS+ Q  F+  R     I +A E+ + L+T   
Sbjct: 290 PISLCNVGYKVISKILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSS 349

Query: 181 GGSA--AVKIDISQAFDTMDWEFLWAVLYHVGFCEVWIQWLKGAFSSNSMSILLNGGPKG 354
                 A+K D+S+A+D ++W F+ A+L  +GFCE WI W+    ++    +L+NG PKG
Sbjct: 350 CKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKG 409

Query: 355 FFSAERGLKQGDPLSPMLFALAEDCLSRNISKLVQEKKIMPMVRNSKYSSPSHLMFADDI 534
               ERGL+QGDPLSP LF L  + L  NI K  ++  I  +   +   + SHL+FADD 
Sbjct: 410 LIIPERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLLFADDS 469

Query: 535 FLFSNANLRYIKHMIKILNRSQDSSGQVINKDKCKL 642
             F  AN      +++IL + +  SGQ IN  K  +
Sbjct: 470 LFFCKANKEQCGIILEILKQYESVSGQQINFSKSSI 505