BLASTX nr result
ID: Coptis21_contig00031834
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00031834 (646 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas... 199 3e-49 gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas... 187 1e-45 gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas... 177 1e-42 gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ... 161 8e-38 gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-... 146 3e-33 >gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H; Endonuclease/exonuclease/phosphatase [Medicago truncatula] Length = 1246 Score = 199 bits (507), Expect = 3e-49 Identities = 100/215 (46%), Positives = 144/215 (66%) Frame = +1 Query: 1 PICLSNFVFKIITKILATRLSPIAERIISKEQYGFIPNRNSQQAIGLASELINELQTPRY 180 PI L+NF FKII+KILA RL+ I RIIS EQ GFI +R+ + + LASE IN L+ +Y Sbjct: 520 PIALANFQFKIISKILADRLADITMRIISVEQRGFIRDRDISKCVILASEAINLLEKRQY 579 Query: 181 GGSAAVKIDISQAFDTMDWEFLWAVLYHVGFCEVWIQWLKGAFSSNSMSILLNGGPKGFF 360 GG+ A+K+DI++AFDT+DW FL AVL GF E ++ W+ S +S+L+NG GFF Sbjct: 580 GGNVALKVDIAKAFDTLDWNFLLAVLQRFGFDEKFVHWILVILQSARLSVLVNGKAVGFF 639 Query: 361 SAERGLKQGDPLSPMLFALAEDCLSRNISKLVQEKKIMPMVRNSKYSSPSHLMFADDIFL 540 + G++QGDPLSP+LF L E+ LSR +S + +++PM S P+H+++ADD+ + Sbjct: 640 TCSHGVRQGDPLSPLLFCLVEEVLSRALSMAATDGQLIPMSYCRGVSFPTHILYADDVLI 699 Query: 541 FSNANLRYIKHMIKILNRSQDSSGQVINKDKCKLF 645 F R I+ +IKI ++ + SGQ+IN K + F Sbjct: 700 FCTGTKRNIRRLIKIFSQYSEVSGQLINNAKSRFF 734 >gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago truncatula] Length = 528 Score = 187 bits (475), Expect = 1e-45 Identities = 91/186 (48%), Positives = 126/186 (67%) Frame = +1 Query: 1 PICLSNFVFKIITKILATRLSPIAERIISKEQYGFIPNRNSQQAIGLASELINELQTPRY 180 PI ++NF FKII+KILA RL+ I I+S+EQ GFI RN + + LASE IN L + Sbjct: 194 PIAMANFKFKIISKILADRLAQIMPNIVSQEQRGFIQGRNIKDCVCLASEAINMLDQKSF 253 Query: 181 GGSAAVKIDISQAFDTMDWEFLWAVLYHVGFCEVWIQWLKGAFSSNSMSILLNGGPKGFF 360 GG+ A K+DIS+AFDT++W+FL VL GF E + W+ S +SI +NG +G+F Sbjct: 254 GGNLAFKVDISKAFDTLNWKFLLKVLKQFGFSETFCNWIDAILQSAKLSICINGSQQGYF 313 Query: 361 SAERGLKQGDPLSPMLFALAEDCLSRNISKLVQEKKIMPMVRNSKYSSPSHLMFADDIFL 540 S RG++QGDPLSP+LF LAED LSR+++KLV++ K+ M PSH+++ADDI + Sbjct: 314 SCSRGVRQGDPLSPLLFCLAEDVLSRSLTKLVEQGKLKQMRGTRNCLVPSHILYADDIMI 373 Query: 541 FSNANL 558 F N + Sbjct: 374 FCNGGI 379 >gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago truncatula] Length = 642 Score = 177 bits (449), Expect = 1e-42 Identities = 92/214 (42%), Positives = 130/214 (60%) Frame = +1 Query: 4 ICLSNFVFKIITKILATRLSPIAERIISKEQYGFIPNRNSQQAIGLASELINELQTPRYG 183 I L NF FKII K+LA RL+ I IISKEQ GF+ RN + I L SE IN L +G Sbjct: 256 IALVNFKFKIINKVLADRLAKILPSIISKEQRGFVQGRNIRDCIALTSEAINVLDNKSFG 315 Query: 184 GSAAVKIDISQAFDTMDWEFLWAVLYHVGFCEVWIQWLKGAFSSNSMSILLNGGPKGFFS 363 G+ A+KID+++AFDT++W+FL VL GF E++ W+K S+ M I +NG GFF+ Sbjct: 316 GNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTILHSSKMFISMNGAQHGFFN 375 Query: 364 AERGLKQGDPLSPMLFALAEDCLSRNISKLVQEKKIMPMVRNSKYSSPSHLMFADDIFLF 543 RG++QGDPLSP+LF + E+ LSR+IS L + I + + P H + DD+ +F Sbjct: 376 CNRGVRQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAASRNNCLPFHCFYVDDLMVF 435 Query: 544 SNANLRYIKHMIKILNRSQDSSGQVINKDKCKLF 645 A + + + + R D SGQ++N K +F Sbjct: 436 CKAKMSSLIVLKSLFTRYADCSGQIMNIRKSFIF 469 >gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa] Length = 1656 Score = 161 bits (408), Expect = 8e-38 Identities = 85/217 (39%), Positives = 129/217 (59%), Gaps = 2/217 (0%) Frame = +1 Query: 1 PICLSNFVFKIITKILATRLSPIAERIISKEQYGFIPNRNSQQAIGLASELINELQTPRY 180 PI L NF +KI+TKI+A+RL P +IS Q F+ NR Q + +A E+ + L+ R Sbjct: 1115 PIALCNFSYKILTKIIASRLQPFMSELISDNQSAFVSNRQIQDNVIIAHEIYHHLKLTRS 1174 Query: 181 --GGSAAVKIDISQAFDTMDWEFLWAVLYHVGFCEVWIQWLKGAFSSNSMSILLNGGPKG 354 G+ +K+D+++A+D ++W FL AVL +GF + WI + +++S+S+L+NG P Sbjct: 1175 CNNGAFGLKLDMNKAYDRVEWNFLEAVLRKMGFVDSWIGLVMSCVTTSSLSVLINGKPGP 1234 Query: 355 FFSAERGLKQGDPLSPMLFALAEDCLSRNISKLVQEKKIMPMVRNSKYSSPSHLMFADDI 534 F RGL+QGDPLSP LF D LSR I+K+ Q+ + P+ SHL FADD Sbjct: 1235 SFLPSRGLRQGDPLSPFLFLFVNDVLSRMINKMCQDSLLTPVTIGPNNLPVSHLFFADDS 1294 Query: 535 FLFSNANLRYIKHMIKILNRSQDSSGQVINKDKCKLF 645 F A L+ + + +L+ +SGQ+IN +K +F Sbjct: 1295 LFFLRATLQNCETLSDLLHTYCIASGQLINVEKSSIF 1331 >gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana] Length = 1142 Score = 146 bits (369), Expect = 3e-33 Identities = 81/216 (37%), Positives = 120/216 (55%), Gaps = 2/216 (0%) Frame = +1 Query: 1 PICLSNFVFKIITKILATRLSPIAERIISKEQYGFIPNRNSQQAIGLASELINELQTPRY 180 PI L N +K+I+KIL RL + +IS+ Q F+ R I +A E+ + L+T Sbjct: 290 PISLCNVGYKVISKILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHGLRTNSS 349 Query: 181 GGSA--AVKIDISQAFDTMDWEFLWAVLYHVGFCEVWIQWLKGAFSSNSMSILLNGGPKG 354 A+K D+S+A+D ++W F+ A+L +GFCE WI W+ ++ +L+NG PKG Sbjct: 350 CKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKG 409 Query: 355 FFSAERGLKQGDPLSPMLFALAEDCLSRNISKLVQEKKIMPMVRNSKYSSPSHLMFADDI 534 ERGL+QGDPLSP LF L + L NI K ++ I + + + SHL+FADD Sbjct: 410 LIIPERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLLFADDS 469 Query: 535 FLFSNANLRYIKHMIKILNRSQDSSGQVINKDKCKL 642 F AN +++IL + + SGQ IN K + Sbjct: 470 LFFCKANKEQCGIILEILKQYESVSGQQINFSKSSI 505