BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00031755
         (306 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002870024.1| pentatricopeptide repeat-containing protein ...   159   3e-37
ref|XP_002305733.1| predicted protein [Populus trichocarpa] gi|2...   159   3e-37
gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossyp...   159   3e-37
gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossyp...   159   3e-37
ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containi...   157   8e-37

>ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297315860|gb|EFH46283.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 871

 Score =  159 bits (401), Expect = 3e-37
 Identities = 68/99 (68%), Positives = 89/99 (89%)
 Frame = -3

Query: 298 AKDLVSWTVMIAGYGMHGCGKDAITIFDQMQSTGLQPDGVSFVAILYACSHSGLLVEGWR 119
           +KDLVSWTVMIAGYGMHG GK+AI +F+QM+  G++PD +SFV++LYACSHSGL+ EGWR
Sbjct: 562 SKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWR 621

Query: 118 FYNIMCNDCKMQPKLEHYACMVDLLARAGRLTKAYKFIE 2
           F+NIM ++CK++P +EHYAC+VD+LAR G L+KAY+FIE
Sbjct: 622 FFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIE 660



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
 Frame = -3

Query: 304 MPAKDLVSWTVMIAGYGMHGCGKDAITIFDQMQSTGLQPDGVSFVAILYACSHSGLLVEG 125
           M  + +VS+T MIAGY   G   +A+ +F++M+  G+ PD  +  A+L  C+ + LL EG
Sbjct: 357 MSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEG 416

Query: 124 WRFYN-IMCNDCKMQPKLEHYACMVDLLARAGRLTKA 17
            R +  I  ND      + +   ++D+ A+ G + +A
Sbjct: 417 KRVHEWIKENDMGFDIFVSN--ALMDMYAKCGSMREA 451


>ref|XP_002305733.1| predicted protein [Populus trichocarpa] gi|222848697|gb|EEE86244.1|
           predicted protein [Populus trichocarpa]
          Length = 571

 Score =  159 bits (401), Expect = 3e-37
 Identities = 68/101 (67%), Positives = 89/101 (88%)
 Frame = -3

Query: 304 MPAKDLVSWTVMIAGYGMHGCGKDAITIFDQMQSTGLQPDGVSFVAILYACSHSGLLVEG 125
           +P KDL++WTVMIAGYGMHG G +AIT F++M+  G++PD VSF++ILYACSHSGLL EG
Sbjct: 260 IPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEG 319

Query: 124 WRFYNIMCNDCKMQPKLEHYACMVDLLARAGRLTKAYKFIE 2
           WRF+N+M ++C ++PKLEHYAC+VDLLAR+G+L  AYKFI+
Sbjct: 320 WRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIK 360


>gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  159 bits (401), Expect = 3e-37
 Identities = 71/101 (70%), Positives = 87/101 (86%)
 Frame = -3

Query: 304 MPAKDLVSWTVMIAGYGMHGCGKDAITIFDQMQSTGLQPDGVSFVAILYACSHSGLLVEG 125
           +P+KDLVSWTVMIAGYGMHG G +AI  F++M+  G++PD VSF++ILYACSHSGLL +G
Sbjct: 355 IPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQG 414

Query: 124 WRFYNIMCNDCKMQPKLEHYACMVDLLARAGRLTKAYKFIE 2
           WRF+ IM ND  ++PKLEHYACMVDLL+R G L+KAYKFIE
Sbjct: 415 WRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIE 455


>gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  159 bits (401), Expect = 3e-37
 Identities = 71/101 (70%), Positives = 87/101 (86%)
 Frame = -3

Query: 304 MPAKDLVSWTVMIAGYGMHGCGKDAITIFDQMQSTGLQPDGVSFVAILYACSHSGLLVEG 125
           +P+KDLVSWTVMIAGYGMHG G +AI  F++M+  G++PD VSF++ILYACSHSGLL +G
Sbjct: 493 IPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQG 552

Query: 124 WRFYNIMCNDCKMQPKLEHYACMVDLLARAGRLTKAYKFIE 2
           WRF+ IM ND  ++PKLEHYACMVDLL+R G L+KAYKFIE
Sbjct: 553 WRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIE 593


>ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  157 bits (397), Expect = 8e-37
 Identities = 70/101 (69%), Positives = 89/101 (88%)
 Frame = -3

Query: 304 MPAKDLVSWTVMIAGYGMHGCGKDAITIFDQMQSTGLQPDGVSFVAILYACSHSGLLVEG 125
           +P KDLVSWTVMIAGYGMHG G +AI  F++M+++G++PD VSF++ILYACSHSGLL EG
Sbjct: 513 IPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEG 572

Query: 124 WRFYNIMCNDCKMQPKLEHYACMVDLLARAGRLTKAYKFIE 2
           W F+N+M N+C ++PK EHYAC+VDLLARAG L+KAYKFI+
Sbjct: 573 WGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIK 613



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 33/97 (34%), Positives = 54/97 (55%)
 Frame = -3

Query: 304 MPAKDLVSWTVMIAGYGMHGCGKDAITIFDQMQSTGLQPDGVSFVAILYACSHSGLLVEG 125
           M  + +VSWT MIAGY   G    ++ +F +M+  G+ PD  +   IL+AC+ +GLL  G
Sbjct: 312 MGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENG 371

Query: 124 WRFYNIMCNDCKMQPKLEHYACMVDLLARAGRLTKAY 14
              +N +  + KMQ  L     ++D+ A+ G +  A+
Sbjct: 372 KDVHNYI-KENKMQSDLFVSNALMDMYAKCGSMGDAH 407



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 26/98 (26%), Positives = 53/98 (54%)
 Frame = -3

Query: 295 KDLVSWTVMIAGYGMHGCGKDAITIFDQMQSTGLQPDGVSFVAILYACSHSGLLVEGWRF 116
           +D++SW  MI+GY  +G  +  + +F+QM   G+  D  + V+++  CS++G+L+ G   
Sbjct: 214 RDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRAL 273

Query: 115 YNIMCNDCKMQPKLEHYACMVDLLARAGRLTKAYKFIE 2
           +           +L    C++D+ +++G L  A +  E
Sbjct: 274 HGYAIK-ASFGKELTLNNCLLDMYSKSGNLNSAIQVFE 310