BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00031555
         (214 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI16398.3| unnamed protein product [Vitis vinifera]               86   4e-15
ref|XP_002299231.1| predicted protein [Populus trichocarpa] gi|2...    82   4e-14
ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    77   2e-12
ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containi...    77   2e-12
ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana] gi...    67   1e-09

>emb|CBI16398.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 43/67 (64%), Positives = 51/67 (76%), Gaps = 3/67 (4%)
 Frame = -2

Query: 192 LHTRL--PHKEKP-NWKTNHTSNFSHPLQCLLENCKSMNQLKQIHTQMILTGLILDGFSV 22
           +HTR   PHKE P NW TNH+   S+P   LLE CKS++QLKQI +QM+LTGLI DGF+ 
Sbjct: 26  IHTRALSPHKENPINWNTNHSFVLSNPFLSLLEKCKSISQLKQIQSQMVLTGLIEDGFAS 85

Query: 21  SRLIAFC 1
           SRLIAFC
Sbjct: 86  SRLIAFC 92


>ref|XP_002299231.1| predicted protein [Populus trichocarpa] gi|222846489|gb|EEE84036.1|
           predicted protein [Populus trichocarpa]
          Length = 668

 Score = 82.0 bits (201), Expect = 4e-14
 Identities = 41/64 (64%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
 Frame = -2

Query: 189 HTRLPHKEKP-NWKTNHTSNFSHPLQCLLENCKSMNQLKQIHTQMILTGLILDGFSVSRL 13
           H+   HK  P +W T HT   S+PL  LLENCKS +QLKQI  QMILTGLILDGF+ SRL
Sbjct: 32  HSFSTHKSNPTSWNTTHTYVLSNPLLSLLENCKSFSQLKQIQAQMILTGLILDGFASSRL 91

Query: 12  IAFC 1
           I+FC
Sbjct: 92  ISFC 95


>ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 41/67 (61%), Positives = 50/67 (74%), Gaps = 3/67 (4%)
 Frame = -2

Query: 192 LHTR-LPH-KEKP-NWKTNHTSNFSHPLQCLLENCKSMNQLKQIHTQMILTGLILDGFSV 22
           LHTR LPH K+KP NW  +H    S+PL  LLE C SM ++K+IH QMI TGLI DGF++
Sbjct: 30  LHTRSLPHHKDKPTNWNASHVLIQSNPLLSLLEACTSMAKMKEIHAQMISTGLISDGFAL 89

Query: 21  SRLIAFC 1
           SRL+AFC
Sbjct: 90  SRLVAFC 96


>ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 41/67 (61%), Positives = 50/67 (74%), Gaps = 3/67 (4%)
 Frame = -2

Query: 192 LHTR-LPH-KEKP-NWKTNHTSNFSHPLQCLLENCKSMNQLKQIHTQMILTGLILDGFSV 22
           LHTR LPH K+KP NW  +H    S+PL  LLE C SM ++K+IH QMI TGLI DGF++
Sbjct: 30  LHTRSLPHHKDKPTNWNASHVLIQSNPLLSLLEACTSMAKMKEIHAQMISTGLISDGFAL 89

Query: 21  SRLIAFC 1
           SRL+AFC
Sbjct: 90  SRLVAFC 96


>ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
           gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g22410, mitochondrial; Flags: Precursor
           gi|4544450|gb|AAD22358.1| hypothetical protein
           [Arabidopsis thaliana] gi|18086349|gb|AAL57637.1|
           At2g22410/F14M13.19 [Arabidopsis thaliana]
           gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis
           thaliana] gi|330252206|gb|AEC07300.1| protein slow
           growth 1 [Arabidopsis thaliana]
          Length = 681

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 33/59 (55%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
 Frame = -2

Query: 174 HKEKP-NWKTNHTSNFSHPLQCLLENCKSMNQLKQIHTQMILTGLILDGFSVSRLIAFC 1
           H++KP NW + H+    +PL  LLE CK +  LKQI  QMI+ GLILD F+ SRLIAFC
Sbjct: 37  HRDKPINWNSTHSFVLHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFC 95