BLASTX nr result

ID: Coptis21_contig00030992 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00030992
         (307 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002332969.1| predicted protein [Populus trichocarpa] gi|2...    75   4e-12
ref|XP_002338806.1| predicted protein [Populus trichocarpa] gi|2...    75   5e-12
ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|2...    75   5e-12
ref|XP_002333396.1| predicted protein [Populus trichocarpa] gi|2...    73   3e-11
ref|XP_002262931.2| PREDICTED: probable LRR receptor-like serine...    72   5e-11

>ref|XP_002332969.1| predicted protein [Populus trichocarpa] gi|222834328|gb|EEE72805.1|
           predicted protein [Populus trichocarpa]
          Length = 960

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 38/62 (61%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
 Frame = -1

Query: 220 CFGCLEEERVALLEFKSSMKFNRTDPY-YGLRTWVDDKGSDCCAWENVECDNTTRRVIRL 44
           C+GCLEEER+ LLE K+S+     DP    LR WVD  GS+CC W  +ECDNTTRRVI+L
Sbjct: 20  CYGCLEEERIGLLEIKASI-----DPDGVSLRDWVD--GSNCCEWHRIECDNTTRRVIQL 72

Query: 43  SL 38
           SL
Sbjct: 73  SL 74


>ref|XP_002338806.1| predicted protein [Populus trichocarpa] gi|222873487|gb|EEF10618.1|
           predicted protein [Populus trichocarpa]
          Length = 147

 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
 Frame = -1

Query: 277 WSWAVYVCFFFVISQCNNGCFGCLEEERVALLEFKSSMKFNRTDPY-YGLRTWVDDKG-- 107
           W W + +  F ++ +    C GCLEEER+ LLE KS +     DP  + LR WVD K   
Sbjct: 7   WVWML-LALFTLVGEWYGRCDGCLEEERIGLLEIKSLI-----DPDGFSLRYWVDSKEDI 60

Query: 106 SDCCAWENVECDNTTRRVIRLSL 38
           SDCC W  ++CDNTTRRVI L+L
Sbjct: 61  SDCCEWGRIKCDNTTRRVIELNL 83


>ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1|
           predicted protein [Populus trichocarpa]
          Length = 1014

 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 37/80 (46%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
 Frame = -1

Query: 274 SWAVYVCFFFVISQCNNGCFGCLEEERVALLEFKSSMKFNRTDPY-YGLRTWVDDKGSDC 98
           +W +      ++ +    C+GCLEEER+ LLE +S +     DP  + LR WVD   S+C
Sbjct: 3   AWMLLAILLTLVGEWYGRCYGCLEEERIGLLEIQSLI-----DPDGFSLRHWVDS--SNC 55

Query: 97  CAWENVECDNTTRRVIRLSL 38
           C W+ +ECDNTTRRVI LSL
Sbjct: 56  CEWDGIECDNTTRRVIELSL 75


>ref|XP_002333396.1| predicted protein [Populus trichocarpa] gi|222836497|gb|EEE74904.1|
           predicted protein [Populus trichocarpa]
          Length = 626

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
 Frame = -1

Query: 277 WSWAVYVCFFFVISQCNNGCFGCLEEERVALLEFKSSMKFNRTDPYYGLRTWVDDKG--S 104
           W+W + +     + Q    C GCLEEER+ LLE K+ +  N     + L  W+ ++   +
Sbjct: 2   WAWML-LTLLTSVGQWYGHCHGCLEEERIGLLEIKALIDPNNVQ--WQLSDWMVNQEDIA 58

Query: 103 DCCAWENVECDNTTRRVIRLSLG 35
           DCC W+ +ECDNTTRRVI+LSLG
Sbjct: 59  DCCGWDGIECDNTTRRVIQLSLG 81


>ref|XP_002262931.2| PREDICTED: probable LRR receptor-like serine/threonine-protein
           kinase At4g36180-like [Vitis vinifera]
          Length = 1231

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 34/78 (43%), Positives = 50/78 (64%)
 Frame = -1

Query: 271 WAVYVCFFFVISQCNNGCFGCLEEERVALLEFKSSMKFNRTDPYYGLRTWVDDKGSDCCA 92
           + ++V    ++  C  GC GC+EEE++ LLEFK+ +K N     + L +W+D+  SDCC 
Sbjct: 8   YLMWVFILLLVQIC--GCKGCIEEEKMGLLEFKAFLKLNDGHADFLLPSWIDNNISDCCN 65

Query: 91  WENVECDNTTRRVIRLSL 38
           WE V C+ TT RV +LSL
Sbjct: 66  WERVICNPTTGRVKKLSL 83


Top