BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00030941
         (844 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABF94046.1| retrotransposon protein, putative, Ty3-gypsy subc...   104   1e-23
gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subc...   108   1e-22
gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subc...   106   4e-22
gb|AAT07561.1| putative polyprotein [Oryza sativa Japonica Group...   102   8e-20
emb|CAN79655.1| hypothetical protein VITISV_001095 [Vitis vinifera]   101   2e-19

>gb|ABF94046.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 504

 Score =  104 bits (259), Expect(2) = 1e-23
 Identities = 59/200 (29%), Positives = 103/200 (51%)
 Frame = +3

Query: 24  REKRRRVVQEIYHLSHKAERVSSTTLQASSTISFKEADLDKVCLPHNNALVVHVKINGWT 203
           + +R+  V++I H+    + +      +++ ISF   D + +  PH + LV+ V+I    
Sbjct: 59  KRQRKAYVRQINHVGTSYQSIPPA--YSNTVISFGPEDAEGILFPHQDPLVISVEITQCE 116

Query: 204 VKRVLIDPGSSCDILFYQTYKDMHLPDSVMIDSNASLYRFSGERTDAIIDVIPPVSIGEK 383
           V+RVL+D GSS D+LFY  +K M +P+  +  +   L  F G++  AI  +   V  G  
Sbjct: 117 VQRVLVDGGSSADVLFYDAFKKMQIPEDRLTHAGIPLQGFGGQQVHAIGKISLQVVFGGG 176

Query: 384 EDMVKTSIHFSVINVKLSYTANLGRRWIHKIQAIPSTLHQVLRFPGPRGIMELRSNQLEA 563
           E+  +  + F V+++   Y A LGR  I+  +AI    +  ++ PGP+G++ +R  QL A
Sbjct: 177 ENKRREEVVFDVVDMPYQYNAILGRSTINIFEAIIHHNYICMKLPGPKGVISVRGGQLAA 236

Query: 564 HRCNHVSTATTPKP*VVESK 623
            +     T       +VE K
Sbjct: 237 RKFELQGTPNMKGVHIVEQK 256



 Score = 32.3 bits (72), Expect(2) = 1e-23
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 737 NRYPKYAYVGADLDPKQKELLVNFLSINKDVFAWS 841
           N   KY  +G +L+ + +E ++  +  N DVFAWS
Sbjct: 280 NELEKYILIGENLEKEVEEEILKVVKANTDVFAWS 314


>gb|ABA97854.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1889

 Score =  108 bits (269), Expect(2) = 1e-22
 Identities = 63/200 (31%), Positives = 107/200 (53%)
 Frame = +3

Query: 24   REKRRRVVQEIYHLSHKAERVSSTTLQASSTISFKEADLDKVCLPHNNALVVHVKINGWT 203
            + +R+  V+++ H+    +  S+  + + + ISF   D + +  PH + LVV V+I    
Sbjct: 708  KRQRKAYVRQVNHVGTSYQ--SNPPVYSKTVISFGPEDAEGILFPHQDPLVVSVEIAQCE 765

Query: 204  VKRVLIDPGSSCDILFYQTYKDMHLPDSVMIDSNASLYRFSGERTDAIIDVIPPVSIGEK 383
            V+RVLID GSS D+LFY  +K M +P+  + ++   L  F G++  AI  +   V  G+ 
Sbjct: 766  VQRVLIDGGSSADVLFYDAFKKMQIPEDRLTNAGVPLQGFGGQQVHAIGKISLQVVFGKG 825

Query: 384  EDMVKTSIHFSVINVKLSYTANLGRRWIHKIQAIPSTLHQVLRFPGPRGIMELRSNQLEA 563
             ++ K  I F V+++   Y A LGR  I+  +AI    +  ++ PGPRG++ +R  QL A
Sbjct: 826  TNVRKEEIVFDVVDMPYQYNAILGRSTINIFEAIIHHNYICMKLPGPRGVITVRGEQLAA 885

Query: 564  HRCNHVSTATTPKP*VVESK 623
             +     T +     VV+ K
Sbjct: 886  RKYELQGTPSVKGVHVVDQK 905



 Score = 25.0 bits (53), Expect(2) = 1e-22
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 707  GDKGKSQFRHNRYPKYAYVGADLDPKQKELLVNFLSINKDVFAWS 841
            G   K Q   +   K+  +G +L+   +E ++  +  N  VFAWS
Sbjct: 919  GKTKKVQLDEHDPGKFILIGENLEKHIEEEILKVVKENMAVFAWS 963


>gb|ABA95229.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1980

 Score =  106 bits (264), Expect(2) = 4e-22
 Identities = 63/200 (31%), Positives = 106/200 (53%)
 Frame = +3

Query: 24   REKRRRVVQEIYHLSHKAERVSSTTLQASSTISFKEADLDKVCLPHNNALVVHVKINGWT 203
            + +R+  V+++ H+    +  S   + + + ISF   D + +  PH + LVV V+I    
Sbjct: 708  KRQRKAYVRQVNHVGTIYQ--SKPPVYSKTVISFGPEDAEGILFPHQDPLVVSVEIAQCE 765

Query: 204  VKRVLIDPGSSCDILFYQTYKDMHLPDSVMIDSNASLYRFSGERTDAIIDVIPPVSIGEK 383
            V+RVLID GSS D+LFY  +K M +P+  + ++   L  F G++  AI  +   V  G+ 
Sbjct: 766  VQRVLIDGGSSADVLFYDAFKKMQIPEDRLTNAGVPLQGFGGQQVHAIGKISLQVVFGKG 825

Query: 384  EDMVKTSIHFSVINVKLSYTANLGRRWIHKIQAIPSTLHQVLRFPGPRGIMELRSNQLEA 563
             ++ K  I F V+++   Y A LGR  I+  +AI    +  ++ PGPRG++ +R  QL A
Sbjct: 826  TNVRKEEIVFDVVDMPYQYNAILGRSTINIFEAIIHHNYICMKLPGPRGVITVRGEQLVA 885

Query: 564  HRCNHVSTATTPKP*VVESK 623
             +     T +     VV+ K
Sbjct: 886  RKYELQGTPSVKGVHVVDQK 905



 Score = 25.0 bits (53), Expect(2) = 4e-22
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 707  GDKGKSQFRHNRYPKYAYVGADLDPKQKELLVNFLSINKDVFAWS 841
            G   K Q   +   K+  +G +L+   +E ++  +  N  VFAWS
Sbjct: 919  GKTKKVQLDEHDPGKFILIGENLEKHIEEEILKVVKENMAVFAWS 963


>gb|AAT07561.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|46981311|gb|AAT07629.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1459

 Score =  102 bits (255), Expect = 8e-20
 Identities = 58/200 (29%), Positives = 102/200 (51%)
 Frame = +3

Query: 24  REKRRRVVQEIYHLSHKAERVSSTTLQASSTISFKEADLDKVCLPHNNALVVHVKINGWT 203
           + +R+  V++I+H+    + V      +++ ISF   D + +  PH + LV+ V+I    
Sbjct: 225 KRQRKAYVRQIHHVGTSYQSVPPA--YSNTVISFGPEDAEGILFPHQDPLVISVEIAQCE 282

Query: 204 VKRVLIDPGSSCDILFYQTYKDMHLPDSVMIDSNASLYRFSGERTDAIIDVIPPVSIGEK 383
           V+RVL+D GSS D+LFY  +K M +P+  +  +   L  F G +   I  +   V  G  
Sbjct: 283 VQRVLVDGGSSADVLFYDAFKKMQIPEDRLTHAGIPLQGFGGHQVHTIGKISLQVVFGGG 342

Query: 384 EDMVKTSIHFSVINVKLSYTANLGRRWIHKIQAIPSTLHQVLRFPGPRGIMELRSNQLEA 563
           E+  +  + F V+++   Y A LGR  I+  +AI    +  ++ PGP+G++ +R  QL A
Sbjct: 343 ENKRREEVVFDVVDMPYQYNAVLGRSTINIFEAIIHHNYICMKLPGPKGVISVRGGQLAA 402

Query: 564 HRCNHVSTATTPKP*VVESK 623
            +     T       ++E K
Sbjct: 403 RKFELQGTPNMKGVYIIEQK 422


>emb|CAN79655.1| hypothetical protein VITISV_001095 [Vitis vinifera]
          Length = 455

 Score =  101 bits (252), Expect = 2e-19
 Identities = 63/202 (31%), Positives = 106/202 (52%), Gaps = 4/202 (1%)
 Frame = +3

Query: 6   NDETSGREKRRRVVQEIY---HLSHKAERVSSTTLQA-SSTISFKEADLDKVCLPHNNAL 173
           +DE + + KR+R++Q      H+S     ++S  +     TI F   D  +V  PH +AL
Sbjct: 242 DDEYNSKRKRQRLLQAATVREHVSSIQSGLASGGIHPIDGTIVFPVVDPARVLQPHRDAL 301

Query: 174 VVHVKINGWTVKRVLIDPGSSCDILFYQTYKDMHLPDSVMIDSNASLYRFSGERTDAIID 353
           ++ +++  + VKR+L+DP SS D+L     K M    S + +   +L  F+G  T ++ D
Sbjct: 302 ILTLRVGDFDVKRILVDPSSSADLLQVAVIKQMSFIPSSLENLGRTLSGFNGSSTTSLGD 361

Query: 354 VIPPVSIGEKEDMVKTSIHFSVINVKLSYTANLGRRWIHKIQAIPSTLHQVLRFPGPRGI 533
           V  PV  G     V  ++ FSV+     + A LGR W+H ++ +PST HQ++ F    G 
Sbjct: 362 VTLPVQAGP----VILNVLFSVVEDLSPFNAILGRTWLHGMKVVPSTYHQMVSFITQDGQ 417

Query: 534 MELRSNQLEAHRCNHVSTATTP 599
           ++L  +QL A +C  ++    P
Sbjct: 418 IDLYESQLAAQQCYQIAREAGP 439