BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00030878
         (644 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN79625.1| hypothetical protein VITISV_035899 [Vitis vinifera]   104   1e-25
gb|AAD19756.1| putative Ty3-gypsy-like retroelement pol polyprot...   110   4e-23
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni...   105   5e-23
emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]        105   1e-22
gb|AAX96591.1| retrotransposon protein, putative, Ty3-gypsy sub-...   105   1e-22

>emb|CAN79625.1| hypothetical protein VITISV_035899 [Vitis vinifera]
          Length = 866

 Score =  104 bits (259), Expect(2) = 1e-25
 Identities = 53/101 (52%), Positives = 69/101 (68%)
 Frame = +2

Query: 128  KIVQLHEEVKGSLNKANAKYKVDADKH*RLNNFEVGDLVMIHLRKERFPVGTYNKLNAKK 307
            +I Q+H EVK +L K N  YK+ AD+H RL  F  GDLVM++LRK  FP  TYN  NA K
Sbjct: 742  RIQQIHLEVKKNLEKVNLHYKIVADQHQRLKLFNEGDLVMVYLRKNHFPTCTYN--NAYK 799

Query: 308  IGPVPILQKINNNVYVVDLPAEFSISKSFNVKDLYRYHGND 430
            IGP  +LQKI +N Y +DL A+ +IS +FNV D++ Y  +D
Sbjct: 800  IGPFRVLQKIGDNAYKIDLLADINISNTFNVVDVFEYFPSD 840



 Score = 38.1 bits (87), Expect(2) = 1e-25
 Identities = 15/22 (68%), Positives = 20/22 (90%)
 Frame = +3

Query: 24  KSPF*IVYTSVPQHVVDLVPLP 89
           K+PF +VYTSVP+H+VDL+ LP
Sbjct: 706 KTPFEVVYTSVPRHIVDLIRLP 727


>gb|AAD19756.1| putative Ty3-gypsy-like retroelement pol polyprotein [Arabidopsis
           thaliana]
          Length = 280

 Score =  110 bits (275), Expect(2) = 4e-23
 Identities = 58/122 (47%), Positives = 77/122 (63%)
 Frame = +2

Query: 128 KIVQLHEEVKGSLNKANAKYKVDADKH*RLNNFEVGDLVMIHLRKERFPVGTYNKLNAKK 307
           +I+ + E VK  L     K KV ADK  R   F+ GD VM+ LRK RF VGTYNK+  +K
Sbjct: 157 EILVVKEVVKAKLEATGKKNKVAADKRRRFKVFKEGDDVMVLLRKGRFAVGTYNKVKPRK 216

Query: 308 IGPVPILQKINNNVYVVDLPAEFSISKSFNVKDLYRYHGNDSILPSIDSRSSPSKDGETD 487
            GP  +L+KIN+N YVV LP   +IS +FNV D++ YH +  + P  + R+S S+  ETD
Sbjct: 217 YGPFKVLRKINDNAYVVALPKSMNISNTFNVADIHEYHADGVLYPEENLRTSSSEVEETD 276

Query: 488 VG 493
           VG
Sbjct: 277 VG 278



 Score = 23.5 bits (49), Expect(2) = 4e-23
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = +3

Query: 45  YTSVPQHVVDLVPLPKVPG 101
           Y SV  HVVDLV LPK  G
Sbjct: 131 YNSVV-HVVDLVKLPKALG 148


>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  105 bits (263), Expect(2) = 5e-23
 Identities = 55/119 (46%), Positives = 76/119 (63%)
 Frame = +2

Query: 131  IVQLHEEVKGSLNKANAKYKVDADKH*RLNNFEVGDLVMIHLRKERFPVGTYNKLNAKKI 310
            +++LHE  K ++ + NAKYK   DK  R  NFE GDLV +HLRKERFP    +KL  +  
Sbjct: 1425 MLKLHETTKENIERMNAKYKFAGDKGRRELNFEPGDLVWLHLRKERFPDLRKSKLMPRAD 1484

Query: 311  GPVPILQKINNNVYVVDLPAEFSISKSFNVKDLYRYHGNDSILPSIDSRSSPSKDGETD 487
            GP  +L KIN N Y +DLPA+F +S +FNV DL  Y G +     ++SR++  ++GE D
Sbjct: 1485 GPFKVLAKINENAYKIDLPADFGVSPTFNVADLKPYLGEED---ELESRTTQMQEGEDD 1540



 Score = 27.7 bits (60), Expect(2) = 5e-23
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 30   PF*IVYTSVPQHVVDLVPLP 89
            PF IVY+ +P+  +DL+PLP
Sbjct: 1390 PFQIVYSLLPRAPIDLMPLP 1409


>emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]
          Length = 2241

 Score =  105 bits (263), Expect(2) = 1e-22
 Identities = 55/119 (46%), Positives = 76/119 (63%)
 Frame = +2

Query: 131  IVQLHEEVKGSLNKANAKYKVDADKH*RLNNFEVGDLVMIHLRKERFPVGTYNKLNAKKI 310
            +++LHE  K ++ + NAKYK   DK  R  NFE GDLV +HLRKERFP    +KL  +  
Sbjct: 1395 MLKLHETTKENIERMNAKYKFAGDKGRRELNFEPGDLVWLHLRKERFPDLRKSKLMPRAD 1454

Query: 311  GPVPILQKINNNVYVVDLPAEFSISKSFNVKDLYRYHGNDSILPSIDSRSSPSKDGETD 487
            GP  +L KIN N Y +DLPA+F +S +FNV DL  Y G +     ++SR++  ++GE D
Sbjct: 1455 GPFKVLAKINENAYKIDLPADFRVSSTFNVADLKPYLGEED---ELESRTTQMQEGEDD 1510



 Score = 26.6 bits (57), Expect(2) = 1e-22
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 30   PF*IVYTSVPQHVVDLVPLP 89
            PF IVY  +P+  +DL+PLP
Sbjct: 1360 PFQIVYGLLPRAPIDLMPLP 1379


>gb|AAX96591.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
            Japonica Group] gi|77550404|gb|ABA93201.1|
            retrotransposon protein, putative, Ty3-gypsy subclass
            [Oryza sativa Japonica Group]
          Length = 1297

 Score =  105 bits (263), Expect(2) = 1e-22
 Identities = 55/119 (46%), Positives = 76/119 (63%)
 Frame = +2

Query: 131  IVQLHEEVKGSLNKANAKYKVDADKH*RLNNFEVGDLVMIHLRKERFPVGTYNKLNAKKI 310
            +++LHE  K ++ + NAKYK   DK  R  NFE GDLV +HLRKERFP    +KL  +  
Sbjct: 1114 MLKLHETTKENIERMNAKYKFAGDKGRRELNFEPGDLVWLHLRKERFPDLRKSKLMPRAD 1173

Query: 311  GPVPILQKINNNVYVVDLPAEFSISKSFNVKDLYRYHGNDSILPSIDSRSSPSKDGETD 487
            GP  +L KIN N Y +DLPA+F +S +FNV DL  Y G +     ++SR++  ++GE D
Sbjct: 1174 GPFKVLAKINENAYKIDLPADFGVSPTFNVADLKPYLGEED---ELESRTTQMQEGEDD 1229



 Score = 26.6 bits (57), Expect(2) = 1e-22
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 30   PF*IVYTSVPQHVVDLVPLP 89
            PF IVY  +P+  +DL+PLP
Sbjct: 1079 PFQIVYGLLPRAPIDLMPLP 1098