BLASTX nr result

ID: Coptis21_contig00030868 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00030868
         (338 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002300744.1| predicted protein [Populus trichocarpa] gi|2...    73   3e-11
ref|XP_003550400.1| PREDICTED: GTPase HflX-like [Glycine max]          72   6e-11
emb|CBI19757.3| unnamed protein product [Vitis vinifera]               71   8e-11
ref|XP_002281042.1| PREDICTED: GTPase HflX-like [Vitis vinifera]       71   8e-11
ref|XP_002510444.1| GTP-binding protein hflx, putative [Ricinus ...    70   2e-10

>ref|XP_002300744.1| predicted protein [Populus trichocarpa] gi|222842470|gb|EEE80017.1|
           predicted protein [Populus trichocarpa]
          Length = 211

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 34/44 (77%), Positives = 38/44 (86%)
 Frame = -1

Query: 338 LLNTIHQVGLVEGTEYTEKGTLVRTHVPLPLARQLTPMRQLCAS 207
           LL+TIHQVG+VE TEYTE GTL++ HVPL  AR LTPMRQLCAS
Sbjct: 168 LLSTIHQVGMVERTEYTESGTLIKAHVPLRFARLLTPMRQLCAS 211


>ref|XP_003550400.1| PREDICTED: GTPase HflX-like [Glycine max]
          Length = 529

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 33/46 (71%), Positives = 38/46 (82%)
 Frame = -1

Query: 338 LLNTIHQVGLVEGTEYTEKGTLVRTHVPLPLARQLTPMRQLCAS*P 201
           LL+TIHQVG+VE TEYTE+GT ++ HVPL  AR LTPMRQLC S P
Sbjct: 484 LLSTIHQVGMVEKTEYTEQGTYIKAHVPLRFARMLTPMRQLCVSQP 529


>emb|CBI19757.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 34/44 (77%), Positives = 37/44 (84%)
 Frame = -1

Query: 338 LLNTIHQVGLVEGTEYTEKGTLVRTHVPLPLARQLTPMRQLCAS 207
           LL+TIHQVG+VE TEYTE GTLV+ HVPL  AR LTPMRQLC S
Sbjct: 518 LLSTIHQVGMVERTEYTENGTLVKAHVPLRFARLLTPMRQLCKS 561


>ref|XP_002281042.1| PREDICTED: GTPase HflX-like [Vitis vinifera]
          Length = 547

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 34/44 (77%), Positives = 37/44 (84%)
 Frame = -1

Query: 338 LLNTIHQVGLVEGTEYTEKGTLVRTHVPLPLARQLTPMRQLCAS 207
           LL+TIHQVG+VE TEYTE GTLV+ HVPL  AR LTPMRQLC S
Sbjct: 504 LLSTIHQVGMVERTEYTENGTLVKAHVPLRFARLLTPMRQLCKS 547


>ref|XP_002510444.1| GTP-binding protein hflx, putative [Ricinus communis]
           gi|223551145|gb|EEF52631.1| GTP-binding protein hflx,
           putative [Ricinus communis]
          Length = 541

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 32/42 (76%), Positives = 36/42 (85%)
 Frame = -1

Query: 338 LLNTIHQVGLVEGTEYTEKGTLVRTHVPLPLARQLTPMRQLC 213
           LL+TIHQVG+VE TEYTE GTL++ HVPL  AR LTPMRQLC
Sbjct: 498 LLSTIHQVGMVERTEYTENGTLIKAHVPLRFARLLTPMRQLC 539


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