BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00030865
         (402 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279701.2| PREDICTED: pentatricopeptide repeat-containi...   148   4e-34
ref|XP_002319806.1| predicted protein [Populus trichocarpa] gi|2...   139   2e-31
ref|XP_004152030.1| PREDICTED: pentatricopeptide repeat-containi...   137   9e-31
ref|XP_002522838.1| pentatricopeptide repeat-containing protein,...   133   1e-29
ref|XP_003607688.1| Pentatricopeptide repeat-containing protein ...   126   2e-27

>ref|XP_002279701.2| PREDICTED: pentatricopeptide repeat-containing protein At4g04790,
           mitochondrial-like [Vitis vinifera]
          Length = 848

 Score =  148 bits (374), Expect = 4e-34
 Identities = 76/140 (54%), Positives = 101/140 (72%), Gaps = 7/140 (5%)
 Frame = +1

Query: 4   SLVQFQNAYLLIKEMNEQGFQVDEKTFGSLLSYLIDMEMVEEFHFFLELIKNGSHTLNPR 183
           SL Q   A+ L +EM EQGF ++E+T+G    YLIDM M+EEFHFF  +I + +     R
Sbjct: 193 SLEQIYKAFQLFEEMKEQGFHIEEETYGPFFMYLIDMGMIEEFHFFHGVITDENSRSLSR 252

Query: 184 LGYYEMLLWIRVDHEDKIQELCKSIVIDADG-------DGFQLAENYLLALCEADRKKEL 342
           LGYYEMLLW+RV++E+KIQELC  I  D DG       D   +AENY+LALCE+ RK+EL
Sbjct: 253 LGYYEMLLWVRVNNEEKIQELCNGIAAD-DGADKPNLTDTVYIAENYVLALCESGRKEEL 311

Query: 343 LQLLEVVDITEVSSRDYVSN 402
           L++LE++DIT+VSS DYV++
Sbjct: 312 LKVLEIIDITKVSSVDYVAS 331


>ref|XP_002319806.1| predicted protein [Populus trichocarpa] gi|222858182|gb|EEE95729.1|
           predicted protein [Populus trichocarpa]
          Length = 784

 Score =  139 bits (350), Expect = 2e-31
 Identities = 69/123 (56%), Positives = 91/123 (73%)
 Frame = +1

Query: 34  LIKEMNEQGFQVDEKTFGSLLSYLIDMEMVEEFHFFLELIKNGSHTLNPRLGYYEMLLWI 213
           L K M EQGF ++E+T+G  L  LID  MVEEFHFF ++IK+ + + N RLGYY+MLL+I
Sbjct: 144 LFKSMKEQGFSIEEETYGPFLILLIDKGMVEEFHFFSDIIKDTNPSKNARLGYYDMLLYI 203

Query: 214 RVDHEDKIQELCKSIVIDADGDGFQLAENYLLALCEADRKKELLQLLEVVDITEVSSRDY 393
            V+ E+KIQELC  I ID   +   L ENYLLALCE+D+K  LLQLLE +DIT+ SS D+
Sbjct: 204 GVNDEEKIQELCNYICIDDGDNNISLRENYLLALCESDQKNYLLQLLETMDITKFSSLDH 263

Query: 394 VSN 402
           +++
Sbjct: 264 LAS 266


>ref|XP_004152030.1| PREDICTED: pentatricopeptide repeat-containing protein At4g04790,
           mitochondrial-like [Cucumis sativus]
          Length = 1295

 Score =  137 bits (345), Expect = 9e-31
 Identities = 66/126 (52%), Positives = 94/126 (74%)
 Frame = +1

Query: 7   LVQFQNAYLLIKEMNEQGFQVDEKTFGSLLSYLIDMEMVEEFHFFLELIKNGSHTLNPRL 186
           L Q    Y L K M EQGF ++++T+G +L+ LIDM+M+EEF+FF E IK+G+     RL
Sbjct: 266 LEQIGKVYQLFKLMKEQGFSLEDETYGPVLACLIDMDMMEEFNFFCEAIKDGNPGSISRL 325

Query: 187 GYYEMLLWIRVDHEDKIQELCKSIVIDADGDGFQLAENYLLALCEADRKKELLQLLEVVD 366
           GYY+ML +I+++ E+K+QELC    +D   D F L ENYLLALC +++KKELLQ+LEV+D
Sbjct: 326 GYYKMLFYIKINDEEKVQELCYRATVDDGVDKFSLQENYLLALCGSEQKKELLQMLEVID 385

Query: 367 ITEVSS 384
           IT++S+
Sbjct: 386 ITKLST 391


>ref|XP_002522838.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223537922|gb|EEF39536.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 867

 Score =  133 bits (335), Expect = 1e-29
 Identities = 69/124 (55%), Positives = 89/124 (71%)
 Frame = +1

Query: 25  AYLLIKEMNEQGFQVDEKTFGSLLSYLIDMEMVEEFHFFLELIKNGSHTLNPRLGYYEML 204
           A+  +K M E+GF++DE+T+   L YLIDM MV EF  F E I+    +   RLGYYEML
Sbjct: 235 AFEFLKLMKEEGFRIDEETYSPFLMYLIDMGMVTEFGSFCEAIEENDSSSLARLGYYEML 294

Query: 205 LWIRVDHEDKIQELCKSIVIDADGDGFQLAENYLLALCEADRKKELLQLLEVVDITEVSS 384
           L IRV++E+KI+ELC  I  +   + F L ENYLLALCE DRK ELLQLLE+VDIT+VSS
Sbjct: 295 LCIRVNNEEKIRELCSYIANNNLNETFDLLENYLLALCERDRKNELLQLLEIVDITKVSS 354

Query: 385 RDYV 396
            +++
Sbjct: 355 LEHM 358


>ref|XP_003607688.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355508743|gb|AES89885.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 1353

 Score =  126 bits (317), Expect = 2e-27
 Identities = 59/130 (45%), Positives = 91/130 (70%)
 Frame = +1

Query: 13  QFQNAYLLIKEMNEQGFQVDEKTFGSLLSYLIDMEMVEEFHFFLELIKNGSHTLNPRLGY 192
           +    Y L+K M E GFQ++E+T+  L  Y+IDM  V+EF  F ++IK G+ +   RLGY
Sbjct: 194 EMNKIYNLLKLMRECGFQIEEQTYRPLFEYIIDMGFVQEFELFYDVIKAGNPSSISRLGY 253

Query: 193 YEMLLWIRVDHEDKIQELCKSIVIDADGDGFQLAENYLLALCEADRKKELLQLLEVVDIT 372
           YEMLLW+RV++E+ I+++C+ I ++   D   L E+YLLALCE+DRK ++L +L+ +DIT
Sbjct: 254 YEMLLWMRVNNEEMIRDICEYITVEESKDTSALRESYLLALCESDRKTQILDVLKNIDIT 313

Query: 373 EVSSRDYVSN 402
           ++ S   +SN
Sbjct: 314 KLKSAKSISN 323