BLASTX nr result
ID: Coptis21_contig00030862
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00030862
(326 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002323489.1| predicted protein [Populus trichocarpa] gi|2... 137 1e-30
ref|XP_002277923.1| PREDICTED: pentatricopeptide repeat-containi... 135 3e-30
emb|CBI30210.3| unnamed protein product [Vitis vinifera] 135 3e-30
ref|XP_004156326.1| PREDICTED: pentatricopeptide repeat-containi... 133 2e-29
ref|XP_004143370.1| PREDICTED: pentatricopeptide repeat-containi... 133 2e-29
>ref|XP_002323489.1| predicted protein [Populus trichocarpa] gi|222868119|gb|EEF05250.1|
predicted protein [Populus trichocarpa]
Length = 915
Score = 137 bits (344), Expect = 1e-30
Identities = 61/108 (56%), Positives = 87/108 (80%)
Frame = +3
Query: 3 KCGSVDDVVSIFERMPEKDVITWTGMVIAFMKFGMVESALKAFVQMPTKSCISYNALLSG 182
+CGS++ V ++FERMP +D+ITWT M+ A+M+FG+V+ A+ F +MP K+ +SYNALL+G
Sbjct: 352 RCGSLNHVAALFERMPVRDIITWTEMITAYMEFGLVDLAVDMFNKMPEKNSVSYNALLTG 411
Query: 183 FCHNGEGLQALKLFRGMLERGMELSDFTLTSIVNACALLSQVEISKQI 326
FC N EGL+AL LF M++ G EL+DFTLT ++NAC LL ++EIS+QI
Sbjct: 412 FCKNNEGLKALNLFVRMVQEGAELTDFTLTGVINACGLLLKLEISRQI 459
>ref|XP_002277923.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g03800-like [Vitis vinifera]
Length = 882
Score = 135 bits (341), Expect = 3e-30
Identities = 62/108 (57%), Positives = 85/108 (78%)
Frame = +3
Query: 3 KCGSVDDVVSIFERMPEKDVITWTGMVIAFMKFGMVESALKAFVQMPTKSCISYNALLSG 182
KCGS+ VV++FE+M +DVITWT M+ A+M+FG+ + AL+ F +MP ++ ISYNA+LSG
Sbjct: 319 KCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSISYNAILSG 378
Query: 183 FCHNGEGLQALKLFRGMLERGMELSDFTLTSIVNACALLSQVEISKQI 326
FC NGEG +AL F M+E G+EL+DFTLT ++NAC LL + +ISKQI
Sbjct: 379 FCQNGEGSKALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQI 426
Score = 65.5 bits (158), Expect = 4e-09
Identities = 29/91 (31%), Positives = 55/91 (60%)
Frame = +3
Query: 54 KDVITWTGMVIAFMKFGMVESALKAFVQMPTKSCISYNALLSGFCHNGEGLQALKLFRGM 233
+D+ +++A++K GMV +A K FV + + +SY A++SGF + QA+++F M
Sbjct: 103 EDIHLANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKSNRERQAMEIFFRM 162
Query: 234 LERGMELSDFTLTSIVNACALLSQVEISKQI 326
G+EL++F+ +I+ C L +E+ Q+
Sbjct: 163 RSSGIELNEFSFVAILTVCIRLLDLELGCQL 193
>emb|CBI30210.3| unnamed protein product [Vitis vinifera]
Length = 900
Score = 135 bits (341), Expect = 3e-30
Identities = 62/108 (57%), Positives = 85/108 (78%)
Frame = +3
Query: 3 KCGSVDDVVSIFERMPEKDVITWTGMVIAFMKFGMVESALKAFVQMPTKSCISYNALLSG 182
KCGS+ VV++FE+M +DVITWT M+ A+M+FG+ + AL+ F +MP ++ ISYNA+LSG
Sbjct: 337 KCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSISYNAILSG 396
Query: 183 FCHNGEGLQALKLFRGMLERGMELSDFTLTSIVNACALLSQVEISKQI 326
FC NGEG +AL F M+E G+EL+DFTLT ++NAC LL + +ISKQI
Sbjct: 397 FCQNGEGSKALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQI 444
Score = 65.5 bits (158), Expect = 4e-09
Identities = 29/91 (31%), Positives = 55/91 (60%)
Frame = +3
Query: 54 KDVITWTGMVIAFMKFGMVESALKAFVQMPTKSCISYNALLSGFCHNGEGLQALKLFRGM 233
+D+ +++A++K GMV +A K FV + + +SY A++SGF + QA+++F M
Sbjct: 121 EDIHLANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKSNRERQAMEIFFRM 180
Query: 234 LERGMELSDFTLTSIVNACALLSQVEISKQI 326
G+EL++F+ +I+ C L +E+ Q+
Sbjct: 181 RSSGIELNEFSFVAILTVCIRLLDLELGCQL 211
>ref|XP_004156326.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g03800-like [Cucumis sativus]
Length = 908
Score = 133 bits (334), Expect = 2e-29
Identities = 60/108 (55%), Positives = 85/108 (78%)
Frame = +3
Query: 3 KCGSVDDVVSIFERMPEKDVITWTGMVIAFMKFGMVESALKAFVQMPTKSCISYNALLSG 182
KCGS +DV +FE MP +DVITWTGM+ ++M+FGM++SA++ F +MP ++CISYNA+L+G
Sbjct: 345 KCGSANDVTDLFETMPIRDVITWTGMITSYMEFGMLDSAVEVFNKMPKRNCISYNAVLAG 404
Query: 183 FCHNGEGLQALKLFRGMLERGMELSDFTLTSIVNACALLSQVEISKQI 326
N +G +AL+LF MLE G+E+SD TLTSI+ AC LL ++S+QI
Sbjct: 405 LSRNDDGSRALELFIEMLEEGVEISDCTLTSIITACGLLKSFKVSQQI 452
Score = 60.1 bits (144), Expect = 2e-07
Identities = 28/92 (30%), Positives = 53/92 (57%)
Frame = +3
Query: 51 EKDVITWTGMVIAFMKFGMVESALKAFVQMPTKSCISYNALLSGFCHNGEGLQALKLFRG 230
E+D+ ++ A++K G+V A K F + + +SY AL+SGF + +A++LF
Sbjct: 127 EEDIFLGNALISAYLKLGLVRDADKVFSGLSCPNVVSYTALISGFSKSDWEDEAVELFFA 186
Query: 231 MLERGMELSDFTLTSIVNACALLSQVEISKQI 326
ML+ G+E +++T +I+ AC ++ Q+
Sbjct: 187 MLDSGIEPNEYTFVAILTACIRNMDYQLGSQV 218
>ref|XP_004143370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g03800-like [Cucumis sativus]
Length = 908
Score = 133 bits (334), Expect = 2e-29
Identities = 60/108 (55%), Positives = 85/108 (78%)
Frame = +3
Query: 3 KCGSVDDVVSIFERMPEKDVITWTGMVIAFMKFGMVESALKAFVQMPTKSCISYNALLSG 182
KCGS +DV +FE MP +DVITWTGM+ ++M+FGM++SA++ F +MP ++CISYNA+L+G
Sbjct: 345 KCGSANDVTDLFETMPIRDVITWTGMITSYMEFGMLDSAVEVFNKMPKRNCISYNAVLAG 404
Query: 183 FCHNGEGLQALKLFRGMLERGMELSDFTLTSIVNACALLSQVEISKQI 326
N +G +AL+LF MLE G+E+SD TLTSI+ AC LL ++S+QI
Sbjct: 405 LSRNDDGSRALELFIEMLEEGVEISDCTLTSIITACGLLKSFKVSQQI 452
Score = 60.1 bits (144), Expect = 2e-07
Identities = 28/92 (30%), Positives = 53/92 (57%)
Frame = +3
Query: 51 EKDVITWTGMVIAFMKFGMVESALKAFVQMPTKSCISYNALLSGFCHNGEGLQALKLFRG 230
E+D+ ++ A++K G+V A K F + + +SY AL+SGF + +A++LF
Sbjct: 127 EEDIFLGNALISAYLKLGLVRDADKVFSGLSCPNVVSYTALISGFSKSDWEDEAVELFFA 186
Query: 231 MLERGMELSDFTLTSIVNACALLSQVEISKQI 326
ML+ G+E +++T +I+ AC ++ Q+
Sbjct: 187 MLDSGIEPNEYTFVAILTACIRNMDYQLGSQV 218