BLASTX nr result

ID: Coptis21_contig00030862 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00030862
         (326 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002323489.1| predicted protein [Populus trichocarpa] gi|2...   137   1e-30
ref|XP_002277923.1| PREDICTED: pentatricopeptide repeat-containi...   135   3e-30
emb|CBI30210.3| unnamed protein product [Vitis vinifera]              135   3e-30
ref|XP_004156326.1| PREDICTED: pentatricopeptide repeat-containi...   133   2e-29
ref|XP_004143370.1| PREDICTED: pentatricopeptide repeat-containi...   133   2e-29

>ref|XP_002323489.1| predicted protein [Populus trichocarpa] gi|222868119|gb|EEF05250.1|
           predicted protein [Populus trichocarpa]
          Length = 915

 Score =  137 bits (344), Expect = 1e-30
 Identities = 61/108 (56%), Positives = 87/108 (80%)
 Frame = +3

Query: 3   KCGSVDDVVSIFERMPEKDVITWTGMVIAFMKFGMVESALKAFVQMPTKSCISYNALLSG 182
           +CGS++ V ++FERMP +D+ITWT M+ A+M+FG+V+ A+  F +MP K+ +SYNALL+G
Sbjct: 352 RCGSLNHVAALFERMPVRDIITWTEMITAYMEFGLVDLAVDMFNKMPEKNSVSYNALLTG 411

Query: 183 FCHNGEGLQALKLFRGMLERGMELSDFTLTSIVNACALLSQVEISKQI 326
           FC N EGL+AL LF  M++ G EL+DFTLT ++NAC LL ++EIS+QI
Sbjct: 412 FCKNNEGLKALNLFVRMVQEGAELTDFTLTGVINACGLLLKLEISRQI 459


>ref|XP_002277923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Vitis vinifera]
          Length = 882

 Score =  135 bits (341), Expect = 3e-30
 Identities = 62/108 (57%), Positives = 85/108 (78%)
 Frame = +3

Query: 3   KCGSVDDVVSIFERMPEKDVITWTGMVIAFMKFGMVESALKAFVQMPTKSCISYNALLSG 182
           KCGS+  VV++FE+M  +DVITWT M+ A+M+FG+ + AL+ F +MP ++ ISYNA+LSG
Sbjct: 319 KCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSISYNAILSG 378

Query: 183 FCHNGEGLQALKLFRGMLERGMELSDFTLTSIVNACALLSQVEISKQI 326
           FC NGEG +AL  F  M+E G+EL+DFTLT ++NAC LL + +ISKQI
Sbjct: 379 FCQNGEGSKALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQI 426



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 29/91 (31%), Positives = 55/91 (60%)
 Frame = +3

Query: 54  KDVITWTGMVIAFMKFGMVESALKAFVQMPTKSCISYNALLSGFCHNGEGLQALKLFRGM 233
           +D+     +++A++K GMV +A K FV +   + +SY A++SGF  +    QA+++F  M
Sbjct: 103 EDIHLANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKSNRERQAMEIFFRM 162

Query: 234 LERGMELSDFTLTSIVNACALLSQVEISKQI 326
              G+EL++F+  +I+  C  L  +E+  Q+
Sbjct: 163 RSSGIELNEFSFVAILTVCIRLLDLELGCQL 193


>emb|CBI30210.3| unnamed protein product [Vitis vinifera]
          Length = 900

 Score =  135 bits (341), Expect = 3e-30
 Identities = 62/108 (57%), Positives = 85/108 (78%)
 Frame = +3

Query: 3   KCGSVDDVVSIFERMPEKDVITWTGMVIAFMKFGMVESALKAFVQMPTKSCISYNALLSG 182
           KCGS+  VV++FE+M  +DVITWT M+ A+M+FG+ + AL+ F +MP ++ ISYNA+LSG
Sbjct: 337 KCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSISYNAILSG 396

Query: 183 FCHNGEGLQALKLFRGMLERGMELSDFTLTSIVNACALLSQVEISKQI 326
           FC NGEG +AL  F  M+E G+EL+DFTLT ++NAC LL + +ISKQI
Sbjct: 397 FCQNGEGSKALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQI 444



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 29/91 (31%), Positives = 55/91 (60%)
 Frame = +3

Query: 54  KDVITWTGMVIAFMKFGMVESALKAFVQMPTKSCISYNALLSGFCHNGEGLQALKLFRGM 233
           +D+     +++A++K GMV +A K FV +   + +SY A++SGF  +    QA+++F  M
Sbjct: 121 EDIHLANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKSNRERQAMEIFFRM 180

Query: 234 LERGMELSDFTLTSIVNACALLSQVEISKQI 326
              G+EL++F+  +I+  C  L  +E+  Q+
Sbjct: 181 RSSGIELNEFSFVAILTVCIRLLDLELGCQL 211


>ref|XP_004156326.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Cucumis sativus]
          Length = 908

 Score =  133 bits (334), Expect = 2e-29
 Identities = 60/108 (55%), Positives = 85/108 (78%)
 Frame = +3

Query: 3   KCGSVDDVVSIFERMPEKDVITWTGMVIAFMKFGMVESALKAFVQMPTKSCISYNALLSG 182
           KCGS +DV  +FE MP +DVITWTGM+ ++M+FGM++SA++ F +MP ++CISYNA+L+G
Sbjct: 345 KCGSANDVTDLFETMPIRDVITWTGMITSYMEFGMLDSAVEVFNKMPKRNCISYNAVLAG 404

Query: 183 FCHNGEGLQALKLFRGMLERGMELSDFTLTSIVNACALLSQVEISKQI 326
              N +G +AL+LF  MLE G+E+SD TLTSI+ AC LL   ++S+QI
Sbjct: 405 LSRNDDGSRALELFIEMLEEGVEISDCTLTSIITACGLLKSFKVSQQI 452



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 53/92 (57%)
 Frame = +3

Query: 51  EKDVITWTGMVIAFMKFGMVESALKAFVQMPTKSCISYNALLSGFCHNGEGLQALKLFRG 230
           E+D+     ++ A++K G+V  A K F  +   + +SY AL+SGF  +    +A++LF  
Sbjct: 127 EEDIFLGNALISAYLKLGLVRDADKVFSGLSCPNVVSYTALISGFSKSDWEDEAVELFFA 186

Query: 231 MLERGMELSDFTLTSIVNACALLSQVEISKQI 326
           ML+ G+E +++T  +I+ AC      ++  Q+
Sbjct: 187 MLDSGIEPNEYTFVAILTACIRNMDYQLGSQV 218


>ref|XP_004143370.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Cucumis sativus]
          Length = 908

 Score =  133 bits (334), Expect = 2e-29
 Identities = 60/108 (55%), Positives = 85/108 (78%)
 Frame = +3

Query: 3   KCGSVDDVVSIFERMPEKDVITWTGMVIAFMKFGMVESALKAFVQMPTKSCISYNALLSG 182
           KCGS +DV  +FE MP +DVITWTGM+ ++M+FGM++SA++ F +MP ++CISYNA+L+G
Sbjct: 345 KCGSANDVTDLFETMPIRDVITWTGMITSYMEFGMLDSAVEVFNKMPKRNCISYNAVLAG 404

Query: 183 FCHNGEGLQALKLFRGMLERGMELSDFTLTSIVNACALLSQVEISKQI 326
              N +G +AL+LF  MLE G+E+SD TLTSI+ AC LL   ++S+QI
Sbjct: 405 LSRNDDGSRALELFIEMLEEGVEISDCTLTSIITACGLLKSFKVSQQI 452



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 53/92 (57%)
 Frame = +3

Query: 51  EKDVITWTGMVIAFMKFGMVESALKAFVQMPTKSCISYNALLSGFCHNGEGLQALKLFRG 230
           E+D+     ++ A++K G+V  A K F  +   + +SY AL+SGF  +    +A++LF  
Sbjct: 127 EEDIFLGNALISAYLKLGLVRDADKVFSGLSCPNVVSYTALISGFSKSDWEDEAVELFFA 186

Query: 231 MLERGMELSDFTLTSIVNACALLSQVEISKQI 326
           ML+ G+E +++T  +I+ AC      ++  Q+
Sbjct: 187 MLDSGIEPNEYTFVAILTACIRNMDYQLGSQV 218


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