BLASTX nr result
ID: Coptis21_contig00030815
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00030815
(836 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI30093.3| unnamed protein product [Vitis vinifera] 73 1e-20
ref|NP_001236527.1| uncharacterized protein LOC100306033 [Glycin... 67 1e-20
ref|XP_003632734.1| PREDICTED: DNA-directed RNA polymerases I, I... 73 2e-20
emb|CBI35146.3| unnamed protein product [Vitis vinifera] 69 3e-18
ref|XP_002269723.2| PREDICTED: DNA-directed RNA polymerases I, I... 69 4e-18
>emb|CBI30093.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 72.8 bits (177), Expect(3) = 1e-20
Identities = 42/95 (44%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Frame = +3
Query: 537 DPSKKILVIFCGTAMMKKVTVQNIFNKIANIQNLDRLMLILENKITYQARQELKLCRVKV 716
DPSKKILVIFCG ++K +++I +I N +L +L+L+L+N IT QA + + L +V
Sbjct: 188 DPSKKILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHITSQALKAVDLFSFQV 247
Query: 717 EYFQITDLLVNY-QACVDAKARVTESGRKGEALQE 818
E FQITDLLVN + + K RV K + L++
Sbjct: 248 EKFQITDLLVNITKHVLKPKHRVLTDQEKNKLLKK 282
Score = 43.9 bits (102), Expect(3) = 1e-20
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 14/47 (29%)
Frame = +2
Query: 368 RVKMESGG--------------CLNAFIDQGSIESHRYYLARRATFE 466
RV M+ GG CL++F+D+G IESHRYYLARR E
Sbjct: 99 RVSMDGGGWFDGDLNGDFEVKRCLSSFVDEGRIESHRYYLARRTLLE 145
Score = 29.6 bits (65), Expect(3) = 1e-20
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 466 NRGYDVPSFELYLSIQVYRSIFGQIP 543
+RGY +P+ ++ +S+Q +RS + Q P
Sbjct: 149 DRGYSIPALDIDISLQDFRSFYSQKP 174
>ref|NP_001236527.1| uncharacterized protein LOC100306033 [Glycine max]
gi|255627335|gb|ACU14012.1| unknown [Glycine max]
Length = 237
Score = 67.4 bits (163), Expect(3) = 1e-20
Identities = 36/69 (52%), Positives = 46/69 (66%)
Frame = +3
Query: 543 SKKILVIFCGTAMMKKVTVQNIFNKIANIQNLDRLMLILENKITYQARQELKLCRVKVEY 722
SK+ILVIFCG ++K ++N +I N L L+LI+EN IT QA + + L KVE
Sbjct: 97 SKRILVIFCGPGVVKVTAIRNTAGQIINRDTLTGLILIVENHITSQALKAVNLFSFKVEI 156
Query: 723 FQITDLLVN 749
FQITDLLVN
Sbjct: 157 FQITDLLVN 165
Score = 46.6 bits (109), Expect(3) = 1e-20
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = +2
Query: 380 ESGGCLNAFIDQGSIESHRYYLARRATFE 466
++ GCL+ F+D GS+ESHRYYL+RR T E
Sbjct: 24 QAKGCLSKFVDNGSVESHRYYLSRRTTLE 52
Score = 32.3 bits (72), Expect(3) = 1e-20
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 466 NRGYDVPSFELYLSIQVYRSIFGQIP 543
+RGY +PS E+ LS+ +R I GQ P
Sbjct: 56 DRGYSIPSHEIDLSLSDFRDIHGQFP 81
>ref|XP_003632734.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Vitis vinifera]
Length = 229
Score = 72.8 bits (177), Expect(3) = 2e-20
Identities = 42/95 (44%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Frame = +3
Query: 537 DPSKKILVIFCGTAMMKKVTVQNIFNKIANIQNLDRLMLILENKITYQARQELKLCRVKV 716
DPSKKILVIFCG ++K +++I +I N +L +L+L+L+N IT QA + + L +V
Sbjct: 87 DPSKKILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHITSQALKAVDLFSFQV 146
Query: 717 EYFQITDLLVNY-QACVDAKARVTESGRKGEALQE 818
E FQITDLLVN + + K RV K + L++
Sbjct: 147 EKFQITDLLVNITKHVLKPKHRVLTDQEKNKLLKK 181
Score = 42.7 bits (99), Expect(3) = 2e-20
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = +2
Query: 392 CLNAFIDQGSIESHRYYLARRATFE 466
CL++F+D+G IESHRYYLARR E
Sbjct: 20 CLSSFVDEGRIESHRYYLARRTLLE 44
Score = 29.6 bits (65), Expect(3) = 2e-20
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 466 NRGYDVPSFELYLSIQVYRSIFGQIP 543
+RGY +P+ ++ +S+Q +RS + Q P
Sbjct: 48 DRGYSIPALDIDISLQDFRSFYSQKP 73
>emb|CBI35146.3| unnamed protein product [Vitis vinifera]
Length = 731
Score = 68.6 bits (166), Expect(4) = 3e-18
Identities = 34/70 (48%), Positives = 52/70 (74%)
Frame = +3
Query: 540 PSKKILVIFCGTAMMKKVTVQNIFNKIANIQNLDRLMLILENKITYQARQELKLCRVKVE 719
PSKKILV+FCGT ++K ++ IF +I N + L RL+L+L++K+ AR+ + +KVE
Sbjct: 591 PSKKILVVFCGTDEIRKAVIRVIFQQI-NREGLHRLILVLQSKMNSHARKVVDEYPIKVE 649
Query: 720 YFQITDLLVN 749
+FQIT+LL+N
Sbjct: 650 FFQITELLIN 659
Score = 40.4 bits (93), Expect(4) = 3e-18
Identities = 16/28 (57%), Positives = 23/28 (82%)
Frame = +2
Query: 383 SGGCLNAFIDQGSIESHRYYLARRATFE 466
+G C+ A ++QGSIES+RYYL+RR F+
Sbjct: 520 NGSCITADMEQGSIESYRYYLSRRTLFQ 547
Score = 27.3 bits (59), Expect(4) = 3e-18
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 466 NRGYDVPSFELYLSIQVYRSIFGQIP 543
+RGY+VP EL S+ +R+ FG P
Sbjct: 551 DRGYNVPHSELTRSLSDFRASFGHNP 576
Score = 20.8 bits (42), Expect(4) = 3e-18
Identities = 9/28 (32%), Positives = 12/28 (42%)
Frame = +1
Query: 751 TKHVLMPKHXXXXXXXXXXXXXXYSVEE 834
TKHV +PKH Y +E+
Sbjct: 661 TKHVSVPKHEILSAQEKRKLVNKYKLED 688
>ref|XP_002269723.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC1-like [Vitis vinifera]
Length = 221
Score = 68.6 bits (166), Expect(4) = 4e-18
Identities = 34/70 (48%), Positives = 52/70 (74%)
Frame = +3
Query: 540 PSKKILVIFCGTAMMKKVTVQNIFNKIANIQNLDRLMLILENKITYQARQELKLCRVKVE 719
PSKKILV+FCGT ++K ++ IF +I N + L RL+L+L++K+ AR+ + +KVE
Sbjct: 81 PSKKILVVFCGTDEIRKAVIRVIFQQI-NREGLHRLILVLQSKMNSHARKVVDEYPIKVE 139
Query: 720 YFQITDLLVN 749
+FQIT+LL+N
Sbjct: 140 FFQITELLIN 149
Score = 40.4 bits (93), Expect(4) = 4e-18
Identities = 16/28 (57%), Positives = 23/28 (82%)
Frame = +2
Query: 383 SGGCLNAFIDQGSIESHRYYLARRATFE 466
+G C+ A ++QGSIES+RYYL+RR F+
Sbjct: 10 NGSCITADMEQGSIESYRYYLSRRTLFQ 37
Score = 27.3 bits (59), Expect(4) = 4e-18
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 466 NRGYDVPSFELYLSIQVYRSIFGQIP 543
+RGY+VP EL S+ +R+ FG P
Sbjct: 41 DRGYNVPHSELTRSLSDFRASFGHNP 66
Score = 20.8 bits (42), Expect(4) = 4e-18
Identities = 9/28 (32%), Positives = 12/28 (42%)
Frame = +1
Query: 751 TKHVLMPKHXXXXXXXXXXXXXXYSVEE 834
TKHV +PKH Y +E+
Sbjct: 151 TKHVSVPKHEILSAQEKRKLVNKYKLED 178