BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00030784
         (1286 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267663.1| PREDICTED: E3 ubiquitin-protein ligase COP1-...   494   e-137
ref|XP_002267709.1| PREDICTED: E3 ubiquitin-protein ligase COP1-...   484   e-134
ref|NP_568435.2| transducin/WD40 domain-containing protein [Arab...   478   e-132
ref|XP_002872071.1| nucleotide binding protein [Arabidopsis lyra...   472   e-131
ref|XP_002528808.1| ubiquitin ligase protein cop1, putative [Ric...   471   e-130

>ref|XP_002267663.1| PREDICTED: E3 ubiquitin-protein ligase COP1-like [Vitis vinifera]
          Length = 382

 Score =  494 bits (1273), Expect = e-137
 Identities = 232/349 (66%), Positives = 277/349 (79%)
 Frame = -1

Query: 1118 ARCEWDFKLCSVVSNSSCIDATSDTVGVIEFDPSDQLLATGGIARKIRIYSIKSLLPDDS 939
            ARC+W+F L +VV++SS   A++DT+GVIEFDPSD L+ATGGIARKIR+YS+KSLLP ++
Sbjct: 34   ARCDWEFNLSTVVTSSST-GASTDTIGVIEFDPSDNLVATGGIARKIRVYSVKSLLPGEN 92

Query: 938  AEGMINSTSLLDNTSVCDYYICTPAKLSSLRWKPNTSGRVVGSGDYDGVVTEYDLERCMP 759
                 ++  LL + + CDYYI TPAKLSSLRWKP +SGRV+GSGDYDGVVTEYDL+R +P
Sbjct: 93   HSHGEHNVKLLQHNNACDYYIWTPAKLSSLRWKPGSSGRVLGSGDYDGVVTEYDLDRKIP 152

Query: 758  IFERDEHGGRRVWSLDYSHSGSTIGASGSDDGTLQMWDTRCVGNKWVAMAQPSISRSAVC 579
            IFERDEHGGRR+WS+DYSH    +GASGSDDGT+QMWD RC G   VA  +PS    AVC
Sbjct: 153  IFERDEHGGRRIWSVDYSHWNPFVGASGSDDGTIQMWDPRCEGTTNVAKVRPSAGGGAVC 212

Query: 578  CVEFDPYGGDLIAVGCADRKAYIYDIRDMSNPMLSFHGHQKTVSYVRFLGNGMMVSAGTD 399
            CVEF+P+GG L+AVGCADR+AY YD+R M +P+L F GHQK V+YVRFL   MMV++GTD
Sbjct: 213  CVEFNPFGGPLVAVGCADRRAYGYDVRKMVDPVLIFDGHQKPVTYVRFLDEHMMVTSGTD 272

Query: 398  GCLKLWDMKDAQTIRTYKGHTNNRNFVGLSVWRNGGLLGCGSESNEVFVYDKRWGNPMWV 219
            GCL+LW M DA+ IR Y GH N RNFVGLSVWR GGLLGCGSE+N VFVYDKRW  P+WV
Sbjct: 273  GCLRLWSMHDARMIRVYMGHMNTRNFVGLSVWRTGGLLGCGSENNHVFVYDKRWSEPIWV 332

Query: 218  HRLEPTVGAGHDHRFISSVCWRQVENDECTLVAGGCDGVLQVFVGKRKS 72
            H        G D +F+SSVCWRQV  D CTLVAGG DG LQV +GKR++
Sbjct: 333  HEFGGGSRDGCDPKFVSSVCWRQVGKDVCTLVAGGSDGSLQVILGKRRA 381


>ref|XP_002267709.1| PREDICTED: E3 ubiquitin-protein ligase COP1-like [Vitis vinifera]
          Length = 383

 Score =  484 bits (1247), Expect = e-134
 Identities = 230/350 (65%), Positives = 275/350 (78%), Gaps = 1/350 (0%)
 Frame = -1

Query: 1118 ARCEWDFKLCSVVSNSSCIDATSDTVGVIEFDPSDQLLATGGIARKIRIYSIKSLLPDDS 939
            AR +W+F L +VVS+SS   A++DT+G+IEFDPSD L+ TGGIARKIR+YSIKS L D++
Sbjct: 34   ARRDWEFSLSTVVSSSSD-GASTDTIGIIEFDPSDNLVVTGGIARKIRVYSIKSFLSDEN 92

Query: 938  AEGMINSTSLLDNTSVCDYYICTPAKLSSLRWKPNTSGRVVGSGDYDGVVTEYDLERCMP 759
                    + L +   CDYY+CTPAKLSSLRWKP ++GRV+GSGDYDGVVTEYDL++ +P
Sbjct: 93   HSHGERKVTWLQHNDACDYYVCTPAKLSSLRWKPGSAGRVLGSGDYDGVVTEYDLDQKIP 152

Query: 758  IFERDEHGGRRVWSLDYSHSGSTIGASGSDDGTLQMWDTRCVGNKWVAMAQPSISRSAVC 579
            IFERDEHGGRR+WS+DYSH    +GASGSDDGT+QMWD RC G K VA  +PS   SAVC
Sbjct: 153  IFERDEHGGRRIWSVDYSHWDPFVGASGSDDGTMQMWDPRCEGIKNVAKVRPSGGGSAVC 212

Query: 578  CVEFDPYGGDLIAVGCADRKAYIYDIRDMSNPMLSFHGHQKTVSYVRFLGNGMMVSAGTD 399
            CVEF+P+GG LIAVGCADR+AY YD+R M +P+L F GHQKTV+YVRFL    MV++GTD
Sbjct: 213  CVEFNPFGGPLIAVGCADRRAYGYDVRKMVDPVLIFDGHQKTVTYVRFLDQHTMVTSGTD 272

Query: 398  GCLKLWDMKDAQTIRTYKGHTNNRNFVGLSVWRNGGLLGCGSESNEVFVYDKRWGNPMWV 219
            GCL+LW M DA+ IR Y GH N R+FVGLSVWR GGLLGCGSE+N VFVYDKRWG P+WV
Sbjct: 273  GCLRLWSMHDARMIRVYMGHMNTRSFVGLSVWRTGGLLGCGSENNHVFVYDKRWGEPIWV 332

Query: 218  HRLEPTVGAGHDHRFISSVCWRQV-ENDECTLVAGGCDGVLQVFVGKRKS 72
            H        G D  F+SSVCWRQV   D CTLVAGG DG+L+V VGK+K+
Sbjct: 333  HEFGVGSRDGRDPNFVSSVCWRQVGGEDGCTLVAGGSDGILEVIVGKKKA 382


>ref|NP_568435.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana]
            gi|10176840|dbj|BAB10046.1| unnamed protein product
            [Arabidopsis thaliana] gi|332005822|gb|AED93205.1|
            transducin/WD40 domain-containing protein [Arabidopsis
            thaliana]
          Length = 368

 Score =  478 bits (1231), Expect = e-132
 Identities = 226/352 (64%), Positives = 274/352 (77%), Gaps = 4/352 (1%)
 Frame = -1

Query: 1118 ARCEWDFKLCSVVSNSSCIDATSDTVGVIEFDPSDQLLATGGIARKIRIYSIKSLLPDDS 939
            AR EWD  L +VVS+SS   + SD +G IEFDP+D ++AT GI+RKIR Y + SLL +++
Sbjct: 20   ARYEWDLSLSTVVSSSS--SSASDVIGAIEFDPTDNIVATAGISRKIRFYGLPSLLRNNA 77

Query: 938  AEGMINSTSLLDNTSVCDYYICTPAKLSSLRWKPNTSGRVVGSGDYDGVVTEYDLERCMP 759
              G     S +D  + C+YYICTPAKLSSLRW+P + GRV+GSGDYDGVV EYDLE+  P
Sbjct: 78   VSG--TGVSFVDQATACEYYICTPAKLSSLRWRPGSGGRVIGSGDYDGVVMEYDLEKRTP 135

Query: 758  IFERDEHGGRRVWSLDYSHSG--STIGASGSDDGTLQMWDTRCVGNKWVAMAQPS-ISRS 588
            +FERDEHGGRRVWS+DY+  G  ST+GASGSDDGT+Q+WD RC   + V + +P+ I RS
Sbjct: 136  VFERDEHGGRRVWSVDYTRHGGASTVGASGSDDGTMQVWDPRCPPEESVGVVRPAGICRS 195

Query: 587  AVCCVEFDPYGGDLIAVGCADRKAYIYDIRDMSNPMLSFHGHQKTVSYVRFLGNGMMVSA 408
            AVCCVEFDP GG  +AVGCADRK Y+YDIR + +P L+  GH KTVSYVRFL  G +V+A
Sbjct: 196  AVCCVEFDPSGGPAVAVGCADRKGYVYDIRKLVDPALTLQGHTKTVSYVRFLDGGTVVTA 255

Query: 407  GTDGCLKLWDMKDAQTIRTYKGHTNNRNFVGLSVWRNGGLLGCGSESNEVFVYDKRWGNP 228
            GTDGCLKLW ++D + IRTY+GH NNRNFVGLSVWRNG L GCGSE+N VFVYD+RWG P
Sbjct: 256  GTDGCLKLWSVEDGRVIRTYEGHVNNRNFVGLSVWRNGALFGCGSENNRVFVYDRRWGKP 315

Query: 227  MWVHRLEPT-VGAGHDHRFISSVCWRQVENDECTLVAGGCDGVLQVFVGKRK 75
            +WV   EP  + +G D RF+SSVCWRQ   D+CTLVAGG DGVLQV+VGKRK
Sbjct: 316  VWVDGFEPVGMNSGSDKRFVSSVCWRQSGVDQCTLVAGGSDGVLQVYVGKRK 367


>ref|XP_002872071.1| nucleotide binding protein [Arabidopsis lyrata subsp. lyrata]
            gi|297317908|gb|EFH48330.1| nucleotide binding protein
            [Arabidopsis lyrata subsp. lyrata]
          Length = 365

 Score =  472 bits (1215), Expect = e-131
 Identities = 224/352 (63%), Positives = 272/352 (77%), Gaps = 4/352 (1%)
 Frame = -1

Query: 1118 ARCEWDFKLCSVVSNSSCIDATSDTVGVIEFDPSDQLLATGGIARKIRIYSIKSLLPDDS 939
            A+ EWD  L +VVS+SS   + SD +G IEFDP+D ++AT GI+RKIR Y + SLL  ++
Sbjct: 17   AKHEWDLSLSTVVSSSS--SSASDVIGAIEFDPTDNIVATAGISRKIRFYGLPSLLRTNA 74

Query: 938  AEGMINSTSLLDNTSVCDYYICTPAKLSSLRWKPNTSGRVVGSGDYDGVVTEYDLERCMP 759
              G     S +D  + C+YYICTPAKLSSLRW+P +  RV+GSGDYDGVVTEYDLE+  P
Sbjct: 75   VSG--TGVSFVDQATACEYYICTPAKLSSLRWRPGSGSRVIGSGDYDGVVTEYDLEKRTP 132

Query: 758  IFERDEHGGRRVWSLDYSHSG--STIGASGSDDGTLQMWDTRCVGNKWVAMAQPS-ISRS 588
            +FERDEHGGRRVWS+DY+  G  S +GASGSDDGT+Q+WD RC   + V++ +PS I RS
Sbjct: 133  VFERDEHGGRRVWSVDYTRHGDASAVGASGSDDGTMQVWDPRCPPEESVSVVRPSGICRS 192

Query: 587  AVCCVEFDPYGGDLIAVGCADRKAYIYDIRDMSNPMLSFHGHQKTVSYVRFLGNGMMVSA 408
            AVCCVEFDP GG  +AVGCADRK Y+YDIR + +P L+  GH KTVSYVRFL    +V+A
Sbjct: 193  AVCCVEFDPSGGPTVAVGCADRKGYVYDIRKLVDPALTLQGHTKTVSYVRFLDGCTVVTA 252

Query: 407  GTDGCLKLWDMKDAQTIRTYKGHTNNRNFVGLSVWRNGGLLGCGSESNEVFVYDKRWGNP 228
            GTDGCLKLW ++D + IRTY+GH NNRNFVGLSVWRNG L GCGSE+N VFVYD+RWG P
Sbjct: 253  GTDGCLKLWSVEDGRVIRTYEGHVNNRNFVGLSVWRNGALFGCGSENNRVFVYDRRWGKP 312

Query: 227  MWVHRLEPT-VGAGHDHRFISSVCWRQVENDECTLVAGGCDGVLQVFVGKRK 75
            +WV   EP  + +G D RF+SSVCWRQ   D+CTLVAGG DGVLQV+VGKRK
Sbjct: 313  VWVDGFEPVGMNSGSDKRFVSSVCWRQSGVDQCTLVAGGSDGVLQVYVGKRK 364


>ref|XP_002528808.1| ubiquitin ligase protein cop1, putative [Ricinus communis]
            gi|223531761|gb|EEF33581.1| ubiquitin ligase protein
            cop1, putative [Ricinus communis]
          Length = 426

 Score =  471 bits (1212), Expect = e-130
 Identities = 223/358 (62%), Positives = 275/358 (76%), Gaps = 7/358 (1%)
 Frame = -1

Query: 1118 ARCEWDFKLCSVVSNSSCIDA-----TSDTVGVIEFDPSDQLLATGGIARKIRIYSIKSL 954
            ARCEW F L +VVS+SS   +     + D +GVIEFD S+ ++ATGGIARKIRIYSIKSL
Sbjct: 70   ARCEWGFSLKTVVSSSSSSTSGGGAVSPDALGVIEFDQSENIVATGGIARKIRIYSIKSL 129

Query: 953  LPDDSAEGMINSTSLLDNTSVCDYYICTPAKLSSLRWKPNTSGRVVGSGDYDGVVTEYDL 774
            LP +      N  +L+D+ + C+++ICTPAKLSSLRWKP + GRV+GSGDYDGVV EYD+
Sbjct: 130  LPQEQQHENGNDIALMDHVNACEFFICTPAKLSSLRWKPCSGGRVIGSGDYDGVVMEYDV 189

Query: 773  ERCMPIFERDEHGGRRVWSLDYSHSGSTIGASGSDDGTLQMWDTRCVGNKWVAMAQPSIS 594
            E  +PIFERDEHGGRR+WS+DYSH    +GASGSDDGT+QMWD R  G   VA  +PS++
Sbjct: 190  ETRIPIFERDEHGGRRIWSVDYSHWSPVVGASGSDDGTMQMWDPRHEGGGCVATVKPSVT 249

Query: 593  RS--AVCCVEFDPYGGDLIAVGCADRKAYIYDIRDMSNPMLSFHGHQKTVSYVRFLGNGM 420
             S  AVC VEF+P+GG +IAVGCADR+ Y YD+R ++NP+    GH+KTV+YVRF+ NG 
Sbjct: 250  SSCRAVCSVEFNPFGGSIIAVGCADRRVYGYDVRMITNPVFVLDGHKKTVTYVRFMDNGT 309

Query: 419  MVSAGTDGCLKLWDMKDAQTIRTYKGHTNNRNFVGLSVWRNGGLLGCGSESNEVFVYDKR 240
            + SAG DGCLKLW+++D+Q +RTYKGH N+RNFVGLSVWRNGGLLGCGSE+N+VFVYDKR
Sbjct: 310  LASAGIDGCLKLWNLQDSQLLRTYKGHLNSRNFVGLSVWRNGGLLGCGSENNQVFVYDKR 369

Query: 239  WGNPMWVHRLEPTVGAGHDHRFISSVCWRQVENDECTLVAGGCDGVLQVFVGKRKSSI 66
            W  P+W +   P      DH F++SVCW QV  D CTLV GG +GVLQVF GKRK  I
Sbjct: 370  WSEPIWAYGSGPAA----DHGFVNSVCWSQVGEDRCTLVTGGSNGVLQVFEGKRKPCI 423