BLASTX nr result

ID: Coptis21_contig00030707 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00030707
         (384 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283237.1| PREDICTED: putative pentatricopeptide repeat...   147   9e-34
emb|CAN64120.1| hypothetical protein VITISV_037241 [Vitis vinifera]   145   3e-33
ref|XP_004173107.1| PREDICTED: putative pentatricopeptide repeat...   139   2e-31
ref|XP_004146077.1| PREDICTED: putative pentatricopeptide repeat...   139   2e-31
ref|XP_002891745.1| pentatricopeptide repeat-containing protein ...   134   6e-30

>ref|XP_002283237.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Vitis vinifera]
          Length = 464

 Score =  147 bits (371), Expect = 9e-34
 Identities = 69/126 (54%), Positives = 94/126 (74%)
 Frame = +1

Query: 1   CSYNILINACCLCNSFDDAWKLFNQMIKNRISPNNVTFATLINGLCLNGKLDEAFKLKED 180
           C+YN+LINACC   S  DAW +F++M++  + PN VTF TLI+GLC + +LDEAF+LKED
Sbjct: 149 CTYNVLINACCSSGSLGDAWNVFDEMLRKHVCPNVVTFGTLISGLCGDSRLDEAFRLKED 208

Query: 181 MVRKYGLKGNVCVYTSLIKGLCKVKEMDLAFKVKEEMVVEMNLGVDSAVYNTLISGLLGS 360
           MV+ + +K N  VY SL+KGLC+V E+ LAF++K+EMV    L +DS +Y+TLI+ L   
Sbjct: 209 MVKVFNVKPNAFVYASLMKGLCRVNELSLAFELKKEMVAN-KLRLDSGIYSTLIAALFKV 267

Query: 361 GRKGEV 378
           GRK EV
Sbjct: 268 GRKDEV 273



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 42/125 (33%), Positives = 66/125 (52%)
 Frame = +1

Query: 7   YNILINACCLCNSFDDAWKLFNQMIKNRISPNNVTFATLINGLCLNGKLDEAFKLKEDMV 186
           Y  L+   C  N    A++L  +M+ N++  ++  ++TLI  L   G+ DE F + E+M 
Sbjct: 222 YASLMKGLCRVNELSLAFELKKEMVANKLRLDSGIYSTLIAALFKVGRKDEVFVVLEEM- 280

Query: 187 RKYGLKGNVCVYTSLIKGLCKVKEMDLAFKVKEEMVVEMNLGVDSAVYNTLISGLLGSGR 366
           R+ G K +   Y ++I G C  K+ + A+ V EEMV +     D   YN +ISGL   G+
Sbjct: 281 RENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVAK-GCKPDVISYNVIISGLCKEGK 339

Query: 367 KGEVN 381
             E N
Sbjct: 340 WREAN 344



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 32/97 (32%), Positives = 53/97 (54%)
 Frame = +1

Query: 4   SYNILINACCLCNSFDDAWKLFNQMIKNRISPNNVTFATLINGLCLNGKLDEAFKLKEDM 183
           +YN +I+  C    F+ A+ +  +M+     P+ +++  +I+GLC  GK  EA  L EDM
Sbjct: 291 TYNAMISGFCNEKDFEAAYGVLEEMVAKGCKPDVISYNVIISGLCKEGKWREANDLFEDM 350

Query: 184 VRKYGLKGNVCVYTSLIKGLCKVKEMDLAFKVKEEMV 294
            R+ G   +V  Y  L  GLC+  + + A  + +EMV
Sbjct: 351 PRR-GCTPDVGSYRILFDGLCEGMQFNEAAFILDEMV 386


>emb|CAN64120.1| hypothetical protein VITISV_037241 [Vitis vinifera]
          Length = 418

 Score =  145 bits (367), Expect = 3e-33
 Identities = 69/126 (54%), Positives = 93/126 (73%)
 Frame = +1

Query: 1   CSYNILINACCLCNSFDDAWKLFNQMIKNRISPNNVTFATLINGLCLNGKLDEAFKLKED 180
           C+YNILINACCL     DAW +F++M++  + PN VTF TLI+GLC + +LDEA +LKED
Sbjct: 149 CTYNILINACCLSGRLGDAWNVFDEMLRKHVCPNVVTFGTLISGLCRDSRLDEASRLKED 208

Query: 181 MVRKYGLKGNVCVYTSLIKGLCKVKEMDLAFKVKEEMVVEMNLGVDSAVYNTLISGLLGS 360
           MV+ + +K N  VY SL+KGLC+V E+ LAF++K+EMV    L +DS +Y+TLI+ L   
Sbjct: 209 MVKVFNVKPNAFVYASLMKGLCRVNELSLAFELKKEMVAN-KLRLDSGIYSTLIAALFKV 267

Query: 361 GRKGEV 378
           GRK EV
Sbjct: 268 GRKDEV 273



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 43/125 (34%), Positives = 67/125 (53%)
 Frame = +1

Query: 7   YNILINACCLCNSFDDAWKLFNQMIKNRISPNNVTFATLINGLCLNGKLDEAFKLKEDMV 186
           Y  L+   C  N    A++L  +M+ N++  ++  ++TLI  L   G+ DE F + E+M 
Sbjct: 222 YASLMKGLCRVNELSLAFELKKEMVANKLRLDSGIYSTLIAALFKVGRKDEVFVVLEEM- 280

Query: 187 RKYGLKGNVCVYTSLIKGLCKVKEMDLAFKVKEEMVVEMNLGVDSAVYNTLISGLLGSGR 366
           R+ G K +   Y ++I G C  K+ + A+ V EEMVV+     D   YN +ISGL   G+
Sbjct: 281 RENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVVK-GCKPDVISYNVIISGLCKEGK 339

Query: 367 KGEVN 381
             E N
Sbjct: 340 WREAN 344



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 32/97 (32%), Positives = 53/97 (54%)
 Frame = +1

Query: 4   SYNILINACCLCNSFDDAWKLFNQMIKNRISPNNVTFATLINGLCLNGKLDEAFKLKEDM 183
           +YN +I+  C    F+ A+ +  +M+     P+ +++  +I+GLC  GK  EA  L EDM
Sbjct: 291 TYNAMISGFCNEKDFEAAYGVLEEMVVKGCKPDVISYNVIISGLCKEGKWREANDLFEDM 350

Query: 184 VRKYGLKGNVCVYTSLIKGLCKVKEMDLAFKVKEEMV 294
            R+ G   +V  Y  L  GLC+  + + A  + +EMV
Sbjct: 351 PRR-GCTPDVGSYRILFDGLCEGMQFNEAAFILDEMV 386


>ref|XP_004173107.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Cucumis sativus]
          Length = 394

 Score =  139 bits (351), Expect = 2e-31
 Identities = 71/127 (55%), Positives = 90/127 (70%)
 Frame = +1

Query: 1   CSYNILINACCLCNSFDDAWKLFNQMIKNRISPNNVTFATLINGLCLNGKLDEAFKLKED 180
           C++NILI+A CLC   D  W +F++M K  + PN VTF TLI GL LN KL EA +LKED
Sbjct: 88  CTFNILIHAACLCGDLDAVWGVFDEMQKRGVKPNVVTFGTLIYGLSLNSKLKEALRLKED 147

Query: 181 MVRKYGLKGNVCVYTSLIKGLCKVKEMDLAFKVKEEMVVEMNLGVDSAVYNTLISGLLGS 360
           MV+ Y +K N  +YT+LIKG C V E++ AFK+KEEMV   N+ + SAVY+TLIS L   
Sbjct: 148 MVKVYMIKPNASIYTTLIKGFCGVGELNFAFKLKEEMVTS-NVKLVSAVYSTLISALFKH 206

Query: 361 GRKGEVN 381
           GRK EV+
Sbjct: 207 GRKEEVS 213



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 33/97 (34%), Positives = 56/97 (57%)
 Frame = +1

Query: 4   SYNILINACCLCNSFDDAWKLFNQMIKNRISPNNVTFATLINGLCLNGKLDEAFKLKEDM 183
           +YN +IN  C  N  + A ++ ++M++    P+  +F T+I  LC  GKLD+A  L EDM
Sbjct: 230 TYNAIINGHCKENDLESAHRVMDEMVEKGCKPDVFSFNTIIGWLCKEGKLDKAMDLLEDM 289

Query: 184 VRKYGLKGNVCVYTSLIKGLCKVKEMDLAFKVKEEMV 294
            R+ G   +V  Y  +  GLC++ ++  A  + +EM+
Sbjct: 290 PRR-GCPPDVLSYRIIFDGLCEMMQLKEATSILDEMI 325


>ref|XP_004146077.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Cucumis sativus]
          Length = 527

 Score =  139 bits (351), Expect = 2e-31
 Identities = 71/127 (55%), Positives = 90/127 (70%)
 Frame = +1

Query: 1   CSYNILINACCLCNSFDDAWKLFNQMIKNRISPNNVTFATLINGLCLNGKLDEAFKLKED 180
           C++NILI+A CLC   D  W +F++M K  + PN VTF TLI GL LN KL EA +LKED
Sbjct: 221 CTFNILIHAACLCGDLDAVWGVFDEMQKRGVKPNVVTFGTLIYGLSLNSKLKEALRLKED 280

Query: 181 MVRKYGLKGNVCVYTSLIKGLCKVKEMDLAFKVKEEMVVEMNLGVDSAVYNTLISGLLGS 360
           MV+ Y +K N  +YT+LIKG C V E++ AFK+KEEMV   N+ + SAVY+TLIS L   
Sbjct: 281 MVKVYMIKPNASIYTTLIKGFCGVGELNFAFKLKEEMVTS-NVKLVSAVYSTLISALFKH 339

Query: 361 GRKGEVN 381
           GRK EV+
Sbjct: 340 GRKEEVS 346



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 33/97 (34%), Positives = 56/97 (57%)
 Frame = +1

Query: 4   SYNILINACCLCNSFDDAWKLFNQMIKNRISPNNVTFATLINGLCLNGKLDEAFKLKEDM 183
           +YN +IN  C  N  + A ++ ++M++    P+  +F T+I  LC  GKLD+A  L EDM
Sbjct: 363 TYNAIINGHCKENDLESAHRVMDEMVEKGCKPDVFSFNTIIGWLCKEGKLDKAMDLLEDM 422

Query: 184 VRKYGLKGNVCVYTSLIKGLCKVKEMDLAFKVKEEMV 294
            R+ G   +V  Y  +  GLC++ ++  A  + +EM+
Sbjct: 423 PRR-GCPPDVLSYRIIFDGLCEMMQLKEATSILDEMI 458


>ref|XP_002891745.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297337587|gb|EFH68004.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 472

 Score =  134 bits (338), Expect = 6e-30
 Identities = 63/127 (49%), Positives = 92/127 (72%)
 Frame = +1

Query: 1   CSYNILINACCLCNSFDDAWKLFNQMIKNRISPNNVTFATLINGLCLNGKLDEAFKLKED 180
           C+YNILI+ C     FDDA KLF++M+K ++ P  VTF TLI+GLC N ++ EA K+K+D
Sbjct: 153 CTYNILIHGCSQRGCFDDALKLFDEMVKKKVKPTGVTFGTLIHGLCKNLRVKEALKMKQD 212

Query: 181 MVRKYGLKGNVCVYTSLIKGLCKVKEMDLAFKVKEEMVVEMNLGVDSAVYNTLISGLLGS 360
           M++ YG++  V +Y SL+K LC++ E+  AFK+K+E   E  + VDSA+Y+TLIS L+ +
Sbjct: 213 MLKVYGVRPTVHIYASLVKALCQIGELSFAFKLKDE-AYEGKIKVDSAIYSTLISSLIKA 271

Query: 361 GRKGEVN 381
           GR  EV+
Sbjct: 272 GRSNEVS 278



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 35/115 (30%), Positives = 59/115 (51%)
 Frame = +1

Query: 7   YNILINACCLCNSFDDAWKLFNQMIKNRISPNNVTFATLINGLCLNGKLDEAFKLKEDMV 186
           Y  L+ A C       A+KL ++  + +I  ++  ++TLI+ L   G+ +E  ++ E+M 
Sbjct: 226 YASLVKALCQIGELSFAFKLKDEAYEGKIKVDSAIYSTLISSLIKAGRSNEVSRILEEMS 285

Query: 187 RKYGLKGNVCVYTSLIKGLCKVKEMDLAFKVKEEMVVEMNLGVDSAVYNTLISGL 351
            K G K +   Y  LI G C   + + A++V +EM VE  L  D   YN ++  L
Sbjct: 286 EK-GCKPDTVTYNVLINGFCVENDSESAYRVLDEM-VEKGLKPDVISYNMILGVL 338


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