BLASTX nr result
ID: Coptis21_contig00030707
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00030707
(384 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002283237.1| PREDICTED: putative pentatricopeptide repeat... 147 9e-34
emb|CAN64120.1| hypothetical protein VITISV_037241 [Vitis vinifera] 145 3e-33
ref|XP_004173107.1| PREDICTED: putative pentatricopeptide repeat... 139 2e-31
ref|XP_004146077.1| PREDICTED: putative pentatricopeptide repeat... 139 2e-31
ref|XP_002891745.1| pentatricopeptide repeat-containing protein ... 134 6e-30
>ref|XP_002283237.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Vitis vinifera]
Length = 464
Score = 147 bits (371), Expect = 9e-34
Identities = 69/126 (54%), Positives = 94/126 (74%)
Frame = +1
Query: 1 CSYNILINACCLCNSFDDAWKLFNQMIKNRISPNNVTFATLINGLCLNGKLDEAFKLKED 180
C+YN+LINACC S DAW +F++M++ + PN VTF TLI+GLC + +LDEAF+LKED
Sbjct: 149 CTYNVLINACCSSGSLGDAWNVFDEMLRKHVCPNVVTFGTLISGLCGDSRLDEAFRLKED 208
Query: 181 MVRKYGLKGNVCVYTSLIKGLCKVKEMDLAFKVKEEMVVEMNLGVDSAVYNTLISGLLGS 360
MV+ + +K N VY SL+KGLC+V E+ LAF++K+EMV L +DS +Y+TLI+ L
Sbjct: 209 MVKVFNVKPNAFVYASLMKGLCRVNELSLAFELKKEMVAN-KLRLDSGIYSTLIAALFKV 267
Query: 361 GRKGEV 378
GRK EV
Sbjct: 268 GRKDEV 273
Score = 69.7 bits (169), Expect = 2e-10
Identities = 42/125 (33%), Positives = 66/125 (52%)
Frame = +1
Query: 7 YNILINACCLCNSFDDAWKLFNQMIKNRISPNNVTFATLINGLCLNGKLDEAFKLKEDMV 186
Y L+ C N A++L +M+ N++ ++ ++TLI L G+ DE F + E+M
Sbjct: 222 YASLMKGLCRVNELSLAFELKKEMVANKLRLDSGIYSTLIAALFKVGRKDEVFVVLEEM- 280
Query: 187 RKYGLKGNVCVYTSLIKGLCKVKEMDLAFKVKEEMVVEMNLGVDSAVYNTLISGLLGSGR 366
R+ G K + Y ++I G C K+ + A+ V EEMV + D YN +ISGL G+
Sbjct: 281 RENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVAK-GCKPDVISYNVIISGLCKEGK 339
Query: 367 KGEVN 381
E N
Sbjct: 340 WREAN 344
Score = 56.2 bits (134), Expect = 3e-06
Identities = 32/97 (32%), Positives = 53/97 (54%)
Frame = +1
Query: 4 SYNILINACCLCNSFDDAWKLFNQMIKNRISPNNVTFATLINGLCLNGKLDEAFKLKEDM 183
+YN +I+ C F+ A+ + +M+ P+ +++ +I+GLC GK EA L EDM
Sbjct: 291 TYNAMISGFCNEKDFEAAYGVLEEMVAKGCKPDVISYNVIISGLCKEGKWREANDLFEDM 350
Query: 184 VRKYGLKGNVCVYTSLIKGLCKVKEMDLAFKVKEEMV 294
R+ G +V Y L GLC+ + + A + +EMV
Sbjct: 351 PRR-GCTPDVGSYRILFDGLCEGMQFNEAAFILDEMV 386
>emb|CAN64120.1| hypothetical protein VITISV_037241 [Vitis vinifera]
Length = 418
Score = 145 bits (367), Expect = 3e-33
Identities = 69/126 (54%), Positives = 93/126 (73%)
Frame = +1
Query: 1 CSYNILINACCLCNSFDDAWKLFNQMIKNRISPNNVTFATLINGLCLNGKLDEAFKLKED 180
C+YNILINACCL DAW +F++M++ + PN VTF TLI+GLC + +LDEA +LKED
Sbjct: 149 CTYNILINACCLSGRLGDAWNVFDEMLRKHVCPNVVTFGTLISGLCRDSRLDEASRLKED 208
Query: 181 MVRKYGLKGNVCVYTSLIKGLCKVKEMDLAFKVKEEMVVEMNLGVDSAVYNTLISGLLGS 360
MV+ + +K N VY SL+KGLC+V E+ LAF++K+EMV L +DS +Y+TLI+ L
Sbjct: 209 MVKVFNVKPNAFVYASLMKGLCRVNELSLAFELKKEMVAN-KLRLDSGIYSTLIAALFKV 267
Query: 361 GRKGEV 378
GRK EV
Sbjct: 268 GRKDEV 273
Score = 71.2 bits (173), Expect = 8e-11
Identities = 43/125 (34%), Positives = 67/125 (53%)
Frame = +1
Query: 7 YNILINACCLCNSFDDAWKLFNQMIKNRISPNNVTFATLINGLCLNGKLDEAFKLKEDMV 186
Y L+ C N A++L +M+ N++ ++ ++TLI L G+ DE F + E+M
Sbjct: 222 YASLMKGLCRVNELSLAFELKKEMVANKLRLDSGIYSTLIAALFKVGRKDEVFVVLEEM- 280
Query: 187 RKYGLKGNVCVYTSLIKGLCKVKEMDLAFKVKEEMVVEMNLGVDSAVYNTLISGLLGSGR 366
R+ G K + Y ++I G C K+ + A+ V EEMVV+ D YN +ISGL G+
Sbjct: 281 RENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVVK-GCKPDVISYNVIISGLCKEGK 339
Query: 367 KGEVN 381
E N
Sbjct: 340 WREAN 344
Score = 55.8 bits (133), Expect = 3e-06
Identities = 32/97 (32%), Positives = 53/97 (54%)
Frame = +1
Query: 4 SYNILINACCLCNSFDDAWKLFNQMIKNRISPNNVTFATLINGLCLNGKLDEAFKLKEDM 183
+YN +I+ C F+ A+ + +M+ P+ +++ +I+GLC GK EA L EDM
Sbjct: 291 TYNAMISGFCNEKDFEAAYGVLEEMVVKGCKPDVISYNVIISGLCKEGKWREANDLFEDM 350
Query: 184 VRKYGLKGNVCVYTSLIKGLCKVKEMDLAFKVKEEMV 294
R+ G +V Y L GLC+ + + A + +EMV
Sbjct: 351 PRR-GCTPDVGSYRILFDGLCEGMQFNEAAFILDEMV 386
>ref|XP_004173107.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Cucumis sativus]
Length = 394
Score = 139 bits (351), Expect = 2e-31
Identities = 71/127 (55%), Positives = 90/127 (70%)
Frame = +1
Query: 1 CSYNILINACCLCNSFDDAWKLFNQMIKNRISPNNVTFATLINGLCLNGKLDEAFKLKED 180
C++NILI+A CLC D W +F++M K + PN VTF TLI GL LN KL EA +LKED
Sbjct: 88 CTFNILIHAACLCGDLDAVWGVFDEMQKRGVKPNVVTFGTLIYGLSLNSKLKEALRLKED 147
Query: 181 MVRKYGLKGNVCVYTSLIKGLCKVKEMDLAFKVKEEMVVEMNLGVDSAVYNTLISGLLGS 360
MV+ Y +K N +YT+LIKG C V E++ AFK+KEEMV N+ + SAVY+TLIS L
Sbjct: 148 MVKVYMIKPNASIYTTLIKGFCGVGELNFAFKLKEEMVTS-NVKLVSAVYSTLISALFKH 206
Query: 361 GRKGEVN 381
GRK EV+
Sbjct: 207 GRKEEVS 213
Score = 65.9 bits (159), Expect = 3e-09
Identities = 33/97 (34%), Positives = 56/97 (57%)
Frame = +1
Query: 4 SYNILINACCLCNSFDDAWKLFNQMIKNRISPNNVTFATLINGLCLNGKLDEAFKLKEDM 183
+YN +IN C N + A ++ ++M++ P+ +F T+I LC GKLD+A L EDM
Sbjct: 230 TYNAIINGHCKENDLESAHRVMDEMVEKGCKPDVFSFNTIIGWLCKEGKLDKAMDLLEDM 289
Query: 184 VRKYGLKGNVCVYTSLIKGLCKVKEMDLAFKVKEEMV 294
R+ G +V Y + GLC++ ++ A + +EM+
Sbjct: 290 PRR-GCPPDVLSYRIIFDGLCEMMQLKEATSILDEMI 325
>ref|XP_004146077.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Cucumis sativus]
Length = 527
Score = 139 bits (351), Expect = 2e-31
Identities = 71/127 (55%), Positives = 90/127 (70%)
Frame = +1
Query: 1 CSYNILINACCLCNSFDDAWKLFNQMIKNRISPNNVTFATLINGLCLNGKLDEAFKLKED 180
C++NILI+A CLC D W +F++M K + PN VTF TLI GL LN KL EA +LKED
Sbjct: 221 CTFNILIHAACLCGDLDAVWGVFDEMQKRGVKPNVVTFGTLIYGLSLNSKLKEALRLKED 280
Query: 181 MVRKYGLKGNVCVYTSLIKGLCKVKEMDLAFKVKEEMVVEMNLGVDSAVYNTLISGLLGS 360
MV+ Y +K N +YT+LIKG C V E++ AFK+KEEMV N+ + SAVY+TLIS L
Sbjct: 281 MVKVYMIKPNASIYTTLIKGFCGVGELNFAFKLKEEMVTS-NVKLVSAVYSTLISALFKH 339
Query: 361 GRKGEVN 381
GRK EV+
Sbjct: 340 GRKEEVS 346
Score = 65.9 bits (159), Expect = 3e-09
Identities = 33/97 (34%), Positives = 56/97 (57%)
Frame = +1
Query: 4 SYNILINACCLCNSFDDAWKLFNQMIKNRISPNNVTFATLINGLCLNGKLDEAFKLKEDM 183
+YN +IN C N + A ++ ++M++ P+ +F T+I LC GKLD+A L EDM
Sbjct: 363 TYNAIINGHCKENDLESAHRVMDEMVEKGCKPDVFSFNTIIGWLCKEGKLDKAMDLLEDM 422
Query: 184 VRKYGLKGNVCVYTSLIKGLCKVKEMDLAFKVKEEMV 294
R+ G +V Y + GLC++ ++ A + +EM+
Sbjct: 423 PRR-GCPPDVLSYRIIFDGLCEMMQLKEATSILDEMI 458
>ref|XP_002891745.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297337587|gb|EFH68004.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 472
Score = 134 bits (338), Expect = 6e-30
Identities = 63/127 (49%), Positives = 92/127 (72%)
Frame = +1
Query: 1 CSYNILINACCLCNSFDDAWKLFNQMIKNRISPNNVTFATLINGLCLNGKLDEAFKLKED 180
C+YNILI+ C FDDA KLF++M+K ++ P VTF TLI+GLC N ++ EA K+K+D
Sbjct: 153 CTYNILIHGCSQRGCFDDALKLFDEMVKKKVKPTGVTFGTLIHGLCKNLRVKEALKMKQD 212
Query: 181 MVRKYGLKGNVCVYTSLIKGLCKVKEMDLAFKVKEEMVVEMNLGVDSAVYNTLISGLLGS 360
M++ YG++ V +Y SL+K LC++ E+ AFK+K+E E + VDSA+Y+TLIS L+ +
Sbjct: 213 MLKVYGVRPTVHIYASLVKALCQIGELSFAFKLKDE-AYEGKIKVDSAIYSTLISSLIKA 271
Query: 361 GRKGEVN 381
GR EV+
Sbjct: 272 GRSNEVS 278
Score = 57.0 bits (136), Expect = 2e-06
Identities = 35/115 (30%), Positives = 59/115 (51%)
Frame = +1
Query: 7 YNILINACCLCNSFDDAWKLFNQMIKNRISPNNVTFATLINGLCLNGKLDEAFKLKEDMV 186
Y L+ A C A+KL ++ + +I ++ ++TLI+ L G+ +E ++ E+M
Sbjct: 226 YASLVKALCQIGELSFAFKLKDEAYEGKIKVDSAIYSTLISSLIKAGRSNEVSRILEEMS 285
Query: 187 RKYGLKGNVCVYTSLIKGLCKVKEMDLAFKVKEEMVVEMNLGVDSAVYNTLISGL 351
K G K + Y LI G C + + A++V +EM VE L D YN ++ L
Sbjct: 286 EK-GCKPDTVTYNVLINGFCVENDSESAYRVLDEM-VEKGLKPDVISYNMILGVL 338