BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00030666
         (483 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274803.1| PREDICTED: pentatricopeptide repeat-containi...   174   7e-42
emb|CAN74807.1| hypothetical protein VITISV_022137 [Vitis vinifera]   174   7e-42
ref|XP_002531295.1| pentatricopeptide repeat-containing protein,...   156   1e-36
ref|XP_003539487.1| PREDICTED: pentatricopeptide repeat-containi...   156   2e-36
ref|XP_003541958.1| PREDICTED: pentatricopeptide repeat-containi...   155   3e-36

>ref|XP_002274803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18970
           [Vitis vinifera] gi|298204853|emb|CBI34160.3| unnamed
           protein product [Vitis vinifera]
          Length = 471

 Score =  174 bits (441), Expect = 7e-42
 Identities = 87/132 (65%), Positives = 104/132 (78%)
 Frame = -1

Query: 483 LVLFYSMGSRFGVTPNIQHYGCIVDLLGRAGRLQEAYNFVIEMQLQPDKILWRSLLAACK 304
           L LF+SM S+FGVTP IQHYGCIVDLLGRAG L+EAY+FV  M ++PD ILWRSLL+ACK
Sbjct: 337 LQLFHSMRSKFGVTPGIQHYGCIVDLLGRAGHLKEAYDFVRGMPVEPDAILWRSLLSACK 396

Query: 303 IHGNSAMGENLGKHLLQLQEESGMVDTVSRCEDFIALSNVYASAGRWKDLEMVREKMKGR 124
           +H +  MGE +GK LLQLQ +    D V+  EDFIALSNVYASA RW+D+E VRE MK +
Sbjct: 397 VHRDVVMGEEVGKLLLQLQPQQSFADLVAASEDFIALSNVYASAERWEDVETVREAMKVK 456

Query: 123 CIQTEQGYSSVQ 88
            I+T+ G SSVQ
Sbjct: 457 GIETKPGCSSVQ 468


>emb|CAN74807.1| hypothetical protein VITISV_022137 [Vitis vinifera]
          Length = 437

 Score =  174 bits (441), Expect = 7e-42
 Identities = 87/132 (65%), Positives = 104/132 (78%)
 Frame = -1

Query: 483 LVLFYSMGSRFGVTPNIQHYGCIVDLLGRAGRLQEAYNFVIEMQLQPDKILWRSLLAACK 304
           L LF+SM S+FGVTP IQHYGCIVDLLGRAG L+EAY+FV  M ++PD ILWRSLL+ACK
Sbjct: 303 LQLFHSMRSKFGVTPGIQHYGCIVDLLGRAGHLKEAYDFVRGMPVEPDAILWRSLLSACK 362

Query: 303 IHGNSAMGENLGKHLLQLQEESGMVDTVSRCEDFIALSNVYASAGRWKDLEMVREKMKGR 124
           +H +  MGE +GK LLQLQ +    D V+  EDFIALSNVYASA RW+D+E VRE MK +
Sbjct: 363 VHRDVVMGEEVGKLLLQLQPQQSFADLVAASEDFIALSNVYASAERWEDVETVREAMKVK 422

Query: 123 CIQTEQGYSSVQ 88
            I+T+ G SSVQ
Sbjct: 423 GIETKPGCSSVQ 434


>ref|XP_002531295.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223529128|gb|EEF31108.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 313

 Score =  156 bits (395), Expect = 1e-36
 Identities = 72/134 (53%), Positives = 100/134 (74%)
 Frame = -1

Query: 483 LVLFYSMGSRFGVTPNIQHYGCIVDLLGRAGRLQEAYNFVIEMQLQPDKILWRSLLAACK 304
           L LF++M  +FG+ P IQHYGCIVDLLG+ G L+EAY F+  M ++PD ILWR LL+ACK
Sbjct: 171 LHLFHNMKGKFGIEPGIQHYGCIVDLLGKGGHLKEAYEFIAGMPMEPDAILWRCLLSACK 230

Query: 303 IHGNSAMGENLGKHLLQLQEESGMVDTVSRCEDFIALSNVYASAGRWKDLEMVREKMKGR 124
           +HG+  MGE + K LL LQ E   V++    ED++ALSNVYASA RW+D+E++R++MK +
Sbjct: 231 VHGDVVMGEKVAKILLHLQPEKNSVESDDSSEDYVALSNVYASAERWEDVEILRKEMKVK 290

Query: 123 CIQTEQGYSSVQLV 82
            ++T+ G S VQ +
Sbjct: 291 RLETKPGASLVQAI 304


>ref|XP_003539487.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g18970-like [Glycine max]
          Length = 595

 Score =  156 bits (394), Expect = 2e-36
 Identities = 79/134 (58%), Positives = 97/134 (72%)
 Frame = -1

Query: 483 LVLFYSMGSRFGVTPNIQHYGCIVDLLGRAGRLQEAYNFVIEMQLQPDKILWRSLLAACK 304
           L LF  M   FGV P IQHYGCIVDLLGRAG+L+EAY+F+++M + PD ++WRSLLAAC 
Sbjct: 459 LQLFLEMKRTFGVMPQIQHYGCIVDLLGRAGKLEEAYDFIMQMPINPDAVIWRSLLAACN 518

Query: 303 IHGNSAMGENLGKHLLQLQEESGMVDTVSRCEDFIALSNVYASAGRWKDLEMVREKMKGR 124
           IHG+  MGE +GK LLQL+E S      S  ED+IALSNVYA A +W D+E VR KMK +
Sbjct: 519 IHGDVVMGEKVGKFLLQLEEWSSAESPKS--EDYIALSNVYALAEKWDDVETVRIKMKAK 576

Query: 123 CIQTEQGYSSVQLV 82
            I  + G S+VQ V
Sbjct: 577 SILNKAGSSAVQTV 590


>ref|XP_003541958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g18970-like [Glycine max]
          Length = 477

 Score =  155 bits (392), Expect = 3e-36
 Identities = 76/139 (54%), Positives = 101/139 (72%)
 Frame = -1

Query: 483 LVLFYSMGSRFGVTPNIQHYGCIVDLLGRAGRLQEAYNFVIEMQLQPDKILWRSLLAACK 304
           L+LF+ M   FG+ P I+HYGCIVDLLGRAG L+EAY+F++ M + PD ++WRSLL ACK
Sbjct: 339 LILFHEMKRTFGMMPQIKHYGCIVDLLGRAGNLEEAYDFIMRMPINPDAVIWRSLLGACK 398

Query: 303 IHGNSAMGENLGKHLLQLQEESGMVDTVSRCEDFIALSNVYASAGRWKDLEMVREKMKGR 124
           IHG+  MGE +GK LLQL+E S      S  ED+IALSNVYA A +W D+E+VR+ MK +
Sbjct: 399 IHGDVVMGEKVGKFLLQLEEWSSAESPKS--EDYIALSNVYALAEKWDDVEIVRKTMKSK 456

Query: 123 CIQTEQGYSSVQLVKS*IV 67
            I ++ G S+VQ V   ++
Sbjct: 457 GILSKAGSSAVQTVSMAVI 475