BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00030631
         (555 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD37021.1| putative non-LTR retrolelement reverse transcript...   132   3e-29
gb|ABD32279.2| reverse transcriptase, putative [Medicago truncat...   132   4e-29
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...   129   4e-28
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...   125   4e-27
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]             124   8e-27

>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 732

 Score =  132 bits (333), Expect = 3e-29
 Identities = 69/190 (36%), Positives = 109/190 (57%), Gaps = 6/190 (3%)
 Frame = -2

Query: 554 KYLGVPLTQGRVTRTTLNTVTEKIKLKLSS*RGHMLSLQGRSTLIKSVISSIPIYNMSIY 375
           KYLG+P+ Q R+ + T   + EK+  +L+  +G  LSL GR TL K+V+SSIP++ MS  
Sbjct: 274 KYLGMPVLQRRINKDTFGDILEKLTTRLAGWKGRFLSLAGRVTLTKAVLSSIPVHTMSTI 333

Query: 374 QWPHRVIKEAEQAMRNFLWSGDPTITKGITVAWDKVCKPYIEGGLGIRKLKEVNKAMLMK 195
             P   +   ++  R+FLW    T  K   ++W +VCKP  EGGLGIRK +++NKA+L K
Sbjct: 334 ALPKSTLDGLDKVSRSFLWGSSVTQRKQHLISWKRVCKPRSEGGLGIRKAQDMNKALLSK 393

Query: 194 LGWNILRG-DDEFARFMKYKYYTRHGDVIGYYRPTSI----WQGIKSALLE-VHPRIQWS 33
           +GW +++     +AR M+  Y  +      + +  S+    W+ +   + E V P + W 
Sbjct: 394 VGWRLIQDYHSLWARIMRCNYRVQDVRDGAWTKVRSVCSSTWRSVALGMREVVIPGLSWV 453

Query: 32  IGDGNKVDIW 3
           IGDG ++  W
Sbjct: 454 IGDGREILFW 463


>gb|ABD32279.2| reverse transcriptase, putative [Medicago truncatula]
          Length = 480

 Score =  132 bits (332), Expect = 4e-29
 Identities = 57/183 (31%), Positives = 108/183 (59%)
 Frame = -2

Query: 551 YLGVPLTQGRVTRTTLNTVTEKIKLKLSS*RGHMLSLQGRSTLIKSVISSIPIYNMSIYQ 372
           YLG P+ +G++      ++ ++IK+K +  +  +LS+ GR  L+KS+I  + +Y+  IY 
Sbjct: 224 YLGCPIFKGKLKGIYFQSIVDRIKVKFAIWKCTLLSIMGRVELVKSIIHGMLVYSFQIYM 283

Query: 371 WPHRVIKEAEQAMRNFLWSGDPTITKGITVAWDKVCKPYIEGGLGIRKLKEVNKAMLMKL 192
           WP R++ + +  ++NF+WSGD    K  TV+W  +C+P+  GGL I+    +N+++++ L
Sbjct: 284 WPRRLLHQLDSWIKNFIWSGDIYTHKVCTVSWKVMCRPWAAGGLDIKPTCLINESLILLL 343

Query: 191 GWNILRGDDEFARFMKYKYYTRHGDVIGYYRPTSIWQGIKSALLEVHPRIQWSIGDGNKV 12
            W     D ++A  M ++ + +HG  + +Y  +S+W GIK  L  +     W +G G  +
Sbjct: 344 AWQFSTADSQWAALMHHR-FLKHGTPLQHYFLSSMWGGIKEHLSTISSNSIWIVGTGANI 402

Query: 11  DIW 3
           ++W
Sbjct: 403 NLW 405


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score =  129 bits (323), Expect = 4e-28
 Identities = 55/136 (40%), Positives = 93/136 (68%)
 Frame = -2

Query: 551 YLGVPLTQGRVTRTTLNTVTEKIKLKLSS*RGHMLSLQGRSTLIKSVISSIPIYNMSIYQ 372
           YLG P+ +G+        + +K+K KL+  +  +LS+ GR  L+KSV+ S+ ++ MSIY 
Sbjct: 496 YLGAPIFKGKPKGIHFQPIADKVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSIYS 555

Query: 371 WPHRVIKEAEQAMRNFLWSGDPTITKGITVAWDKVCKPYIEGGLGIRKLKEVNKAMLMKL 192
           WP +++KE E+ ++NF+WSGD T  K +TVAW K+C  Y EGGLG++ L  +N+A  +K+
Sbjct: 556 WPIKILKEMEKWIKNFIWSGDVTKRKMVTVAWRKICADYEEGGLGVKSLICLNEATNLKI 615

Query: 191 GWNILRGDDEFARFMK 144
            WN+++ D+++A  ++
Sbjct: 616 CWNLMQSDEQWANIIR 631


>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score =  125 bits (314), Expect = 4e-27
 Identities = 61/125 (48%), Positives = 85/125 (68%)
 Frame = -2

Query: 551 YLGVPLTQGRVTRTTLNTVTEKIKLKLSS*RGHMLSLQGRSTLIKSVISSIPIYNMSIYQ 372
           YLGVP+ +G+     L  + +KIK KLS+ +  +LS+ GR  LIKSV  S+ I+ ++IY 
Sbjct: 402 YLGVPIFKGKPKARFLQPIVDKIKTKLSNWKASILSIAGRVQLIKSVAQSMLIHTITIYD 461

Query: 371 WPHRVIKEAEQAMRNFLWSGDPTITKGITVAWDKVCKPYIEGGLGIRKLKEVNKAMLMKL 192
           WP  ++KE E   RNF+WSGD T  K +TVAW K+CKP  +GGLGIR L ++N A  +KL
Sbjct: 462 WPSFLLKELETCFRNFIWSGDITKRKLVTVAWKKLCKPQSQGGLGIRSLSQLNAAGNLKL 521

Query: 191 GWNIL 177
            W++L
Sbjct: 522 CWDML 526


>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
          Length = 1898

 Score =  124 bits (312), Expect = 8e-27
 Identities = 59/186 (31%), Positives = 103/186 (55%), Gaps = 3/186 (1%)
 Frame = -2

Query: 551  YLGVPLTQGRVTRTTLNTVTEKIKLKLSS*RGHMLSLQGRSTLIKSVISSIPIYNMSIYQ 372
            YLG+P+ + RV+R T N V +K++ KLSS +   L++ GR  L+++ ++++P Y M +  
Sbjct: 1286 YLGIPMLKERVSRNTFNAVIDKMRTKLSSWKASSLNMAGRRVLVQASLATVPTYTMQVMA 1345

Query: 371  WPHRVIKEAEQAMRNFLWSGDPTITKGITVAWDKVCKPYIEGGLGIRKLKEVNKAMLMKL 192
             P     E ++  RNFLW  D    K  +V W ++CKP  EGGLG+R  ++ N+A L K+
Sbjct: 1346 LPVSTCNEIDKTCRNFLWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKM 1405

Query: 191  GWNILRGDDEFARFMKYKYYTRHGDVIGYYRPTSI---WQGIKSALLEVHPRIQWSIGDG 21
             W I    D+    +  + Y ++ D +     ++    W+ I      +   I+W++G+G
Sbjct: 1406 AWQIFSNIDKLWVKVLREKYVKNADFLHLQSQSNCSWGWRSIMKGKDVLAGAIKWNVGNG 1465

Query: 20   NKVDIW 3
             K++ W
Sbjct: 1466 RKINFW 1471