BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00030588
         (806 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containi...   355   8e-96
ref|XP_002328495.1| predicted protein [Populus trichocarpa] gi|2...   347   1e-93
ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containi...   341   1e-91
ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containi...   341   1e-91
ref|NP_187126.1| pentatricopeptide repeat-containing protein [Ar...   296   4e-78

>ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
            mitochondrial-like [Vitis vinifera]
          Length = 654

 Score =  355 bits (910), Expect = 8e-96
 Identities = 171/268 (63%), Positives = 209/268 (77%), Gaps = 1/268 (0%)
 Frame = +3

Query: 6    AQNLIVLNALLDMYVKSEELELAQSIFGTIREKDVISWNTIIYGYAKIGDLESASSLFNE 185
            + NLI+ NALLDMYVK +EL +AQSIF  I  KD ISWNT+I GYAK+G+LE A + F +
Sbjct: 262  SSNLILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFED 321

Query: 186  MPKKDLVSWNSLIAGYAQRRNWSAVMDLFKGMIGENVKPDKVTVVTLVCAAAEVGVLYQG 365
            MP +DLVSWNS+IAGYAQ+ +   V  LF+ M+ EN+ PD VT++ LV AAAE+G L+ G
Sbjct: 322  MPCRDLVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHG 381

Query: 366  RWIHGWLARAHIKIDAFLASALVDMYCKCGSIEKALIVFNKVGEKDVAVWTAMIAGLAFH 545
            RWIHGW+ R  +KIDAFL SA +DMY KCGSI++A +VF +V EKDV VWT MI G AFH
Sbjct: 382  RWIHGWVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVTEKDVTVWTTMITGFAFH 441

Query: 546  GHGLHALKLFQEMQDISRPNRVTFIAILTACSHGGMIDQGLKIFNSMID-YGIEPGVEHY 722
            G+G  AL+LF EMQ+   PN+VTF+A+LTACSH G + QGL+IFNSM + YGIEPGVEHY
Sbjct: 442  GYGSKALQLFYEMQEYVMPNQVTFVAVLTACSHSGFVSQGLRIFNSMKERYGIEPGVEHY 501

Query: 723  GCLVDLLARAGRGSEAKRIIEKMPMNPS 806
            GCLVDLL R+GR SE K +IE MPM PS
Sbjct: 502  GCLVDLLGRSGRFSEVKDVIEMMPMKPS 529



 Score = 86.7 bits (213), Expect = 6e-15
 Identities = 61/216 (28%), Positives = 104/216 (48%), Gaps = 4/216 (1%)
 Frame = +3

Query: 120 NTIIYGYAKIGDLESASSLFNEMPKKDLVSWNSLIAGYAQRRNWSAVMDLFKGMIGENVK 299
           NT++  Y +   +  A  +F +M   D VS+N +I GYA++ +    +     M+G  +K
Sbjct: 166 NTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLGLK 225

Query: 300 PDKVTVVTLVCAAAEVGVLYQGRWIHGWLARAHI--KIDAFLASALVDMYCKCGSIEKAL 473
           PD+ T++ L+     +G    G+ +H W+ R  +    +  L +AL+DMY KC  +  A 
Sbjct: 226 PDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQ 285

Query: 474 IVFNKVGEKDVAVWTAMIAGLAFHGHGLHALKLFQEM--QDISRPNRVTFIAILTACSHG 647
            +FN +  KD   W  MIAG A  G+   A   F++M  +D+     V++ +I+   +  
Sbjct: 286 SIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRDL-----VSWNSIIAGYAQK 340

Query: 648 GMIDQGLKIFNSMIDYGIEPGVEHYGCLVDLLARAG 755
           G      ++F +M+   I P       LV   A  G
Sbjct: 341 GDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIG 376


>ref|XP_002328495.1| predicted protein [Populus trichocarpa] gi|222838210|gb|EEE76575.1|
           predicted protein [Populus trichocarpa]
          Length = 580

 Score =  347 bits (891), Expect = 1e-93
 Identities = 163/267 (61%), Positives = 211/267 (79%)
 Frame = +3

Query: 6   AQNLIVLNALLDMYVKSEELELAQSIFGTIREKDVISWNTIIYGYAKIGDLESASSLFNE 185
           + NLI+ NALLDMYVK +++ELA   FG ++EKD++SWN I+ G AK+G+LE A   F +
Sbjct: 198 SSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAGCAKVGELEQARLFFYQ 257

Query: 186 MPKKDLVSWNSLIAGYAQRRNWSAVMDLFKGMIGENVKPDKVTVVTLVCAAAEVGVLYQG 365
           MP +D+VSWNSL+ GYA R ++++V +L   M+ E V PD VT+++LV AA E G L QG
Sbjct: 258 MPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMISLVSAATESGALDQG 317

Query: 366 RWIHGWLARAHIKIDAFLASALVDMYCKCGSIEKALIVFNKVGEKDVAVWTAMIAGLAFH 545
           RW HGW+ R  IK+DAFL SAL+DMYCKCGSIE+A  VF ++ +KDV VWT MI GLAFH
Sbjct: 318 RWAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKEINKKDVTVWTTMITGLAFH 377

Query: 546 GHGLHALKLFQEMQDISRPNRVTFIAILTACSHGGMIDQGLKIFNSMIDYGIEPGVEHYG 725
           G+G  AL+LF EMQ+   P+ VTF+++L+ACSH G++DQG+K+F+SM DYGIEPGVEHYG
Sbjct: 378 GYGSKALELFSEMQEDVSPDDVTFVSVLSACSHSGLVDQGIKVFSSMTDYGIEPGVEHYG 437

Query: 726 CLVDLLARAGRGSEAKRIIEKMPMNPS 806
           CLVDLLAR+GR SEAK II++MPM PS
Sbjct: 438 CLVDLLARSGRLSEAKDIIDQMPMKPS 464



 Score =  112 bits (281), Expect = 7e-23
 Identities = 74/258 (28%), Positives = 124/258 (48%), Gaps = 34/258 (13%)
 Frame = +3

Query: 120 NTIIYGYAKIGDLESASSLFNEMPKKDLVSWNSLIAGYAQRRNWSAVMDLFKGMIGENVK 299
           NT+I  Y + G +  A  +F +MP  D+VS+N +I GYA++      M LF  M+G  ++
Sbjct: 102 NTLIKVYLENGLVRLAHQVFEKMPSPDIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLE 161

Query: 300 PDKVTVVTLVCAAAEVGVLYQGRWIHGWLARAH--IKIDAFLASALVDMYCKCGSIEKAL 473
           PD+ T++ L+ +  ++G +  G+ +HGW+ R    I  +  L +AL+DMY KC  +E AL
Sbjct: 162 PDEFTILGLLVSCGQLGNVKFGKAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELAL 221

Query: 474 IVFNKVGEKDVAVWTAMIAGLAFHGHGLHALKLFQEM--QDISR---------------- 599
             F  + EKD+  W  ++AG A  G    A   F +M  +DI                  
Sbjct: 222 RTFGALKEKDIVSWNMIVAGCAKVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFAS 281

Query: 600 --------------PNRVTFIAILTACSHGGMIDQGLKIFNSMIDYGIEPGVEHYGCLVD 737
                         P+ VT I++++A +  G +DQG      +I   I+        L+D
Sbjct: 282 VKELIVDMVMEKVIPDTVTMISLVSAATESGALDQGRWAHGWVIRMQIKLDAFLGSALID 341

Query: 738 LLARAGRGSEAKRIIEKM 791
           +  + G    A R+ +++
Sbjct: 342 MYCKCGSIERASRVFKEI 359


>ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
            mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  341 bits (874), Expect = 1e-91
 Identities = 165/269 (61%), Positives = 204/269 (75%), Gaps = 1/269 (0%)
 Frame = +3

Query: 3    GAQNLIVLNALLDMYVKSEELELAQSIFGTIREKDVISWNTIIYGYAKIGDLESASSLFN 182
            G+ NLI+ NALLDMYVK  EL+LA+ +F    EKD +SWNTII GYAK+G+LE A  LFN
Sbjct: 195  GSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFN 254

Query: 183  EMPKKDLVSWNSLIAGYAQRRNWSAVMDLFKGMIGENVKPDKVTVVTLVCAAAEVGVLYQ 362
            ++P +D+VSWNSLI+GYAQ  ++  V  LF  M  ENVKPDKVT+V L+ A AE+G L Q
Sbjct: 255  QIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQ 314

Query: 363  GRWIHGWLARAHIKIDAFLASALVDMYCKCGSIEKALIVFNKVGEKDVAVWTAMIAGLAF 542
            GRWIHG   +   KI+AF  SAL+DMYCKCGSIE+A ++FN++ EKDV  WT MI G AF
Sbjct: 315  GRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAF 374

Query: 543  HGHGLHALKLFQEMQDISRPNRVTFIAILTACSHGGMIDQGLKIFNSMID-YGIEPGVEH 719
            HG G  AL+LF  MQ  ++PN VTF+++L ACSH G++D+GLKIF+SM   Y IEPGVEH
Sbjct: 375  HGFGNKALELFSVMQAETKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEH 434

Query: 720  YGCLVDLLARAGRGSEAKRIIEKMPMNPS 806
            YGCLVDLL R+GR  +A  +IEKMPM PS
Sbjct: 435  YGCLVDLLCRSGRLLDAIGVIEKMPMEPS 463



 Score =  100 bits (248), Expect = 5e-19
 Identities = 66/270 (24%), Positives = 129/270 (47%), Gaps = 32/270 (11%)
 Frame = +3

Query: 81  IFGTIREKDVISWNTIIYGYAKIGDLESASSLFNEMPKKDLVSWNSLIAGYAQRRNWSAV 260
           +FG + +++ +  N++I  Y   G  E A  LF+EM  +++VS+N++I G+A+  N   +
Sbjct: 90  VFGLLSKEEYLR-NSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGI 148

Query: 261 MDLFKGMIGENVKPDKVTVVTLVCAAAEVGVLYQGRWIHGWLARAHIKIDAFLASALVDM 440
           ++LF  M    ++PD  T++ L+    ++G    G+ +H  + ++    +  L +AL+DM
Sbjct: 149 LELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDM 208

Query: 441 YCKC-------------------------------GSIEKALIVFNKVGEKDVAVWTAMI 527
           Y KC                               G +E A  +FN++  +D+  W ++I
Sbjct: 209 YVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLI 268

Query: 528 AGLAFHGHGLHALKLFQEM-QDISRPNRVTFIAILTACSHGGMIDQGLKIFNSMIDYGIE 704
           +G A +G  +    LF  M  +  +P++VT + +++A +  G +DQG  I    +    +
Sbjct: 269 SGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTK 328

Query: 705 PGVEHYGCLVDLLARAGRGSEAKRIIEKMP 794
                   L+D+  + G    A  I  ++P
Sbjct: 329 IEAFSGSALIDMYCKCGSIERAFVIFNQIP 358


>ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
            mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  341 bits (874), Expect = 1e-91
 Identities = 165/269 (61%), Positives = 204/269 (75%), Gaps = 1/269 (0%)
 Frame = +3

Query: 3    GAQNLIVLNALLDMYVKSEELELAQSIFGTIREKDVISWNTIIYGYAKIGDLESASSLFN 182
            G+ NLI+ NALLDMYVK  EL+LA+ +F    EKD +SWNTII GYAK+G+LE A  LFN
Sbjct: 260  GSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFN 319

Query: 183  EMPKKDLVSWNSLIAGYAQRRNWSAVMDLFKGMIGENVKPDKVTVVTLVCAAAEVGVLYQ 362
            ++P +D+VSWNSLI+GYAQ  ++  V  LF  M  ENVKPDKVT+V L+ A AE+G L Q
Sbjct: 320  QIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQ 379

Query: 363  GRWIHGWLARAHIKIDAFLASALVDMYCKCGSIEKALIVFNKVGEKDVAVWTAMIAGLAF 542
            GRWIHG   +   KI+AF  SAL+DMYCKCGSIE+A ++FN++ EKDV  WT MI G AF
Sbjct: 380  GRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAF 439

Query: 543  HGHGLHALKLFQEMQDISRPNRVTFIAILTACSHGGMIDQGLKIFNSMID-YGIEPGVEH 719
            HG G  AL+LF  MQ  ++PN VTF+++L ACSH G++D+GLKIF+SM   Y IEPGVEH
Sbjct: 440  HGFGNKALELFSVMQAETKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEH 499

Query: 720  YGCLVDLLARAGRGSEAKRIIEKMPMNPS 806
            YGCLVDLL R+GR  +A  +IEKMPM PS
Sbjct: 500  YGCLVDLLCRSGRLLDAIGVIEKMPMEPS 528



 Score =  100 bits (248), Expect = 5e-19
 Identities = 66/270 (24%), Positives = 129/270 (47%), Gaps = 32/270 (11%)
 Frame = +3

Query: 81  IFGTIREKDVISWNTIIYGYAKIGDLESASSLFNEMPKKDLVSWNSLIAGYAQRRNWSAV 260
           +FG + +++ +  N++I  Y   G  E A  LF+EM  +++VS+N++I G+A+  N   +
Sbjct: 155 VFGLLSKEEYLR-NSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGI 213

Query: 261 MDLFKGMIGENVKPDKVTVVTLVCAAAEVGVLYQGRWIHGWLARAHIKIDAFLASALVDM 440
           ++LF  M    ++PD  T++ L+    ++G    G+ +H  + ++    +  L +AL+DM
Sbjct: 214 LELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDM 273

Query: 441 YCKC-------------------------------GSIEKALIVFNKVGEKDVAVWTAMI 527
           Y KC                               G +E A  +FN++  +D+  W ++I
Sbjct: 274 YVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLI 333

Query: 528 AGLAFHGHGLHALKLFQEM-QDISRPNRVTFIAILTACSHGGMIDQGLKIFNSMIDYGIE 704
           +G A +G  +    LF  M  +  +P++VT + +++A +  G +DQG  I    +    +
Sbjct: 334 SGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTK 393

Query: 705 PGVEHYGCLVDLLARAGRGSEAKRIIEKMP 794
                   L+D+  + G    A  I  ++P
Sbjct: 394 IEAFSGSALIDMYCKCGSIERAFVIFNQIP 423


>ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At3g04750, mitochondrial; Flags: Precursor
            gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein
            [Arabidopsis thaliana] gi|332640610|gb|AEE74131.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 661

 Score =  296 bits (758), Expect = 4e-78
 Identities = 149/272 (54%), Positives = 202/272 (74%), Gaps = 5/272 (1%)
 Frame = +3

Query: 6    AQNLIVLNALLDMYVKSEELELAQSIFGTIREKDVISWNTIIYGYAKIGDLESASSLFNE 185
            + NLI+ NALLDMY K +E  LA+  F  +++KD+ SWNT++ G+ ++GD+E+A ++F++
Sbjct: 266  SSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQ 325

Query: 186  MPKKDLVSWNSLIAGYAQRR-NWSAVMDLFKGM-IGENVKPDKVTVVTLVCAAAEVGVLY 359
            MPK+DLVSWNSL+ GY+++  +   V +LF  M I E VKPD+VT+V+L+  AA  G L 
Sbjct: 326  MPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELS 385

Query: 360  QGRWIHGWLARAHIKIDAFLASALVDMYCKCGSIEKALIVFNKVGEKDVAVWTAMIAGLA 539
             GRW+HG + R  +K DAFL+SAL+DMYCKCG IE+A +VF    EKDVA+WT+MI GLA
Sbjct: 386  HGRWVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLA 445

Query: 540  FHGHGLHALKLFQEMQDIS-RPNRVTFIAILTACSHGGMIDQGLKIFNSMID-YGIEPGV 713
            FHG+G  AL+LF  MQ+    PN VT +A+LTACSH G++++GL +FN M D +G +P  
Sbjct: 446  FHGNGQQALQLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPET 505

Query: 714  EHYGCLVDLLARAGRGSEAKRIIE-KMPMNPS 806
            EHYG LVDLL RAGR  EAK I++ KMPM PS
Sbjct: 506  EHYGSLVDLLCRAGRVEEAKDIVQKKMPMRPS 537



 Score = 97.4 bits (241), Expect = 3e-18
 Identities = 58/249 (23%), Positives = 120/249 (48%), Gaps = 36/249 (14%)
 Frame = +3

Query: 117 WNTIIYGYAKIGDLESASSLFNEMPKKDLVSWNSLIAGYAQRRNWSAVMDLFKGMIGENV 296
           WN+++  Y ++G+   A  +F  MP  D+ S+N +I GYA++      + L+  M+ + +
Sbjct: 169 WNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGI 228

Query: 297 KPDKVTVVTLVCAAAEVGVLYQGRWIHGWLARAH--IKIDAFLASALVDMYCKC------ 452
           +PD+ TV++L+     +  +  G+ +HGW+ R       +  L++AL+DMY KC      
Sbjct: 229 EPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLA 288

Query: 453 -------------------------GSIEKALIVFNKVGEKDVAVWTAMIAGLAFHGHGL 557
                                    G +E A  VF+++ ++D+  W +++ G +  G   
Sbjct: 289 KRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQ 348

Query: 558 HALK-LFQEMQDIS--RPNRVTFIAILTACSHGGMIDQGLKIFNSMIDYGIEPGVEHYGC 728
             ++ LF EM  +   +P+RVT +++++  ++ G +  G  +   +I   ++        
Sbjct: 349 RTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQLKGDAFLSSA 408

Query: 729 LVDLLARAG 755
           L+D+  + G
Sbjct: 409 LIDMYCKCG 417