BLASTX nr result
ID: Coptis21_contig00030522
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00030522
(856 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002281726.1| PREDICTED: double-strand break repair protei... 116 6e-24
ref|XP_003539581.1| PREDICTED: double-strand break repair protei... 86 1e-14
ref|XP_002330391.1| predicted protein [Populus trichocarpa] gi|2... 84 3e-14
ref|XP_004154884.1| PREDICTED: double-strand break repair protei... 84 4e-14
gb|EEE61764.1| hypothetical protein OsJ_16317 [Oryza sativa Japo... 73 7e-11
>ref|XP_002281726.1| PREDICTED: double-strand break repair protein MRE11 [Vitis vinifera]
gi|302143084|emb|CBI20379.3| unnamed protein product
[Vitis vinifera]
Length = 731
Score = 116 bits (291), Expect = 6e-24
Identities = 86/221 (38%), Positives = 110/221 (49%), Gaps = 7/221 (3%)
Frame = +1
Query: 7 SKEGTSFLSLSQSLLDARGKTTA--GISNSFSDDDESAQLVTSSTA-RGRKVSSAAFRSS 177
SKE F+S ++SL + R K TA G + SFSDD++ QL S +A RGRK SSA F+SS
Sbjct: 512 SKETPQFMSSARSLENIRSKGTAETGSAVSFSDDEDPTQLSGSKSATRGRKGSSATFKSS 571
Query: 178 HEVSEIXXXXXXXXXXXXXXXXXXXXXXLKQTTLDATMGIXXXXXXXXXXXXXXXXXXXX 357
H+ SE LKQ TLD+++G
Sbjct: 572 HDASEQGKGKSSTRGRGRGRGRGRSSSTLKQMTLDSSLGFRHSERSASVAATAAVRNLAD 631
Query: 358 XDEENSGSPSGXXXXXXXXXXXXXISENEESLPVRGQKRVAPKG---STASSSKRGRKLD 528
DE+N S S SEN+E+L +G+KR AP+G +SSKRGRK D
Sbjct: 632 -DEDNVESSSSDEAGKYGINEVDDSSENDENLQGKGRKRAAPRGRGRGATTSSKRGRKSD 690
Query: 529 TSSIHRKLMNIXXXXXXXX-MGSRIKKVQPRVTRNYGAIRR 648
++SI R LMN M R+ K QPRVTRNYGA+RR
Sbjct: 691 STSIQRMLMNKDDDDDDEDDMSKRLNKPQPRVTRNYGALRR 731
>ref|XP_003539581.1| PREDICTED: double-strand break repair protein MRE11-like [Glycine
max]
Length = 714
Score = 85.5 bits (210), Expect = 1e-14
Identities = 74/222 (33%), Positives = 99/222 (44%), Gaps = 8/222 (3%)
Frame = +1
Query: 7 SKEGTSFLSLSQSLLDARGKTTAGISNSFS-DDDESAQLVTSS--TARGRKVSSAAFRSS 177
SKE T + +Q D +G++ AG ++ S DDE A V+SS + RGRK SS A +++
Sbjct: 509 SKEPTQLTADAQPWKDFQGRSAAGTGSAVSFSDDEDAMPVSSSKPSTRGRKGSSGASQTT 568
Query: 178 HEVSEIXXXXXXXXXXXXXXXXXXXXXXLKQTTLDATMGIXXXXXXXXXXXXXXXXXXXX 357
+KQTT+D +G
Sbjct: 569 TR------------GRGRGRGRGRGSSTMKQTTIDGALGFRVSQRSASVAAATAIRSGA- 615
Query: 358 XDEENSGSPSGXXXXXXXXXXXXXISENEESLPVRGQKRVAPKG---STASSSKRGRKLD 528
D++N S S SENE +LP GQKR A KG + SSKRGRK D
Sbjct: 616 -DDDNLASASSDDANKNDVEEIDDSSENESNLP--GQKRAASKGRGRGSTQSSKRGRKSD 672
Query: 529 TSSIHRKLMN--IXXXXXXXXMGSRIKKVQPRVTRNYGAIRR 648
SSIHR L+N + R+ K QPRVT++YGA+RR
Sbjct: 673 NSSIHRMLVNNDDDDDDDDTDIRKRLNKSQPRVTKSYGALRR 714
>ref|XP_002330391.1| predicted protein [Populus trichocarpa] gi|222871776|gb|EEF08907.1|
predicted protein [Populus trichocarpa]
Length = 772
Score = 84.3 bits (207), Expect = 3e-14
Identities = 72/215 (33%), Positives = 98/215 (45%), Gaps = 7/215 (3%)
Frame = +1
Query: 7 SKEGTSFLSLSQSLLDARGKTTAGISN--SFSDDDESAQLVTS-STARGRKVSSAAFRSS 177
S + F S +QS+ D R T+AG+ + SFSD++++AQ+ S ST RGRK S RSS
Sbjct: 506 STDAAQFTSGAQSMEDFRS-TSAGVGSAVSFSDEEDAAQISGSTSTTRGRKGSRVGSRSS 564
Query: 178 HEVSEIXXXXXXXXXXXXXXXXXXXXXXLKQTTLDATMGIXXXXXXXXXXXXXXXXXXXX 357
H+VSE LKQTTLDAT+G
Sbjct: 565 HDVSETGKGKTSARGRGRGRGRGRGSSNLKQTTLDATLGFRQSQRSASVSATAAVRSIAV 624
Query: 358 XDEENSGSPSGXXXXXXXXXXXXXISENEESLPVRGQ--KRVAPKGST--ASSSKRGRKL 525
DE N S S S ++ES+ +G+ KR A +G A+ SKRGRK
Sbjct: 625 EDE-NVDSASSEDSKKLGMNEVADSSNDDESIQGKGKGRKRAAARGRGRGATPSKRGRKS 683
Query: 526 DTSSIHRKLMNIXXXXXXXXMGSRIKKVQPRVTRN 630
+ S++ R LMN + R+ K QPR+ N
Sbjct: 684 ENSALQRMLMNKDDDDDDDDVTKRLNKSQPRLYLN 718
>ref|XP_004154884.1| PREDICTED: double-strand break repair protein MRE11-like [Cucumis
sativus]
Length = 739
Score = 84.0 bits (206), Expect = 4e-14
Identities = 73/221 (33%), Positives = 93/221 (42%), Gaps = 7/221 (3%)
Frame = +1
Query: 7 SKEGTSFLSLSQSLLD--ARGKTTAGISNSFSDDDESAQLVTSSTARGRKVSSAAFRSSH 180
SK T F S QS D +R T G + SFSDD+++A+ S + RGRKVSS A +
Sbjct: 533 SKNDTVFTSSIQSSKDFGSRSSMTVGSAVSFSDDEDAAKTSGSKSTRGRKVSSRAAEDTS 592
Query: 181 EVSEIXXXXXXXXXXXXXXXXXXXXXXLKQTTLDATMGIXXXXXXXXXXXXXXXXXXXXX 360
+ LKQTTLDA +G
Sbjct: 593 TKTS--------TRGRGRGRGRGSSSSLKQTTLDAALGF------RKSQRSATAAVQSIV 638
Query: 361 DEENSGSPSGXXXXXXXXXXXXXISENEESLPVRGQKRVAPKGSTASS--SKRGRKLDTS 534
+ + S S SEN+ESL +G+KR AP+G S SKRGRK D S
Sbjct: 639 NTDAMNSASSGEARENEVEEINDSSENDESLLSKGRKRTAPRGRGRGSTQSKRGRKSDNS 698
Query: 535 SIHRKLM---NIXXXXXXXXMGSRIKKVQPRVTRNYGAIRR 648
+ R + N + K QPRVTRNYGA+RR
Sbjct: 699 LVQRTFISRDNDDDSEDEDNARKLLNKSQPRVTRNYGALRR 739
>gb|EEE61764.1| hypothetical protein OsJ_16317 [Oryza sativa Japonica Group]
Length = 686
Score = 73.2 bits (178), Expect = 7e-11
Identities = 69/222 (31%), Positives = 97/222 (43%), Gaps = 8/222 (3%)
Frame = +1
Query: 7 SKEGTSFLSLSQSLLDARGKTTAGISN--SFSDDDESAQLVTSS--TARGRKVSSAAFRS 174
SKE + F S SQ+L+D G++ SN SFSDD+++ +++ + T GRK S R
Sbjct: 489 SKEDSRFTSSSQNLVDTGGRSVTAQSNLNSFSDDEDTREMLLGARTTNAGRKASGFT-RP 547
Query: 175 SHEVSEIXXXXXXXXXXXXXXXXXXXXXXLKQTTLDATMGIXXXXXXXXXXXXXXXXXXX 354
S + +++ +KQTTL+ +
Sbjct: 548 SKDATDVAKTGTSRRGRGRGTAS------MKQTTLNFSQS-------RSSAAIRSEEVQS 594
Query: 355 XXDEENSGSPSGXXXXXXXXXXXXXISENEESLPVRGQKRVAPKGSTA----SSSKRGRK 522
DEEN + + SE EES G+KR AP+G +++KRGRK
Sbjct: 595 SSDEENETNEANEVVES---------SEPEESPQQTGRKRAAPRGGRGRGRGATAKRGRK 645
Query: 523 LDTSSIHRKLMNIXXXXXXXXMGSRIKKVQPRVTRNYGAIRR 648
D SSI LM+ R KK PRVTRNYGA+RR
Sbjct: 646 ADISSIQSMLMS--KDDDDDDEDDRPKKPPPRVTRNYGAVRR 685