BLASTX nr result
ID: Coptis21_contig00030520
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00030520 (617 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III s... 154 9e-36 emb|CBI17549.3| unnamed protein product [Vitis vinifera] 154 9e-36 emb|CAN60111.1| hypothetical protein VITISV_023619 [Vitis vinifera] 153 3e-35 ref|XP_002310208.1| predicted protein [Populus trichocarpa] gi|2... 148 7e-34 ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 142 6e-32 >ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Vitis vinifera] Length = 672 Score = 154 bits (390), Expect = 9e-36 Identities = 96/198 (48%), Positives = 120/198 (60%), Gaps = 24/198 (12%) Frame = +2 Query: 92 LDLDDLGLNDTQTTKPTLRPKSRFQPKSVK--LIPKPEPQLDTPPP----IKLIETKPLI 253 +DLDDL D P RP SRF PKS K LIPKPEP P + LI K Sbjct: 1 MDLDDL---DGPNRAPVRRP-SRFAPKSSKPKLIPKPEPSSQPEPSKLDDVTLINKKEED 56 Query: 254 ENKPDVSTKDE-------NEVLDTQM---------MDKDNEDEGDTVVREIDVYFTPSPL 385 P V DE N V++ ++ M++D+ DE D VVREIDV+FTP P Sbjct: 57 SQPPLVKKADEPFASSTQNGVIEMEVEAKAEVEDAMEEDDRDE-DPVVREIDVFFTPPPT 115 Query: 386 DNNTQLYVMQYPLRPSWRPYELNEKCQKVRVKPESGKVEVELSVD-NNSNYDDAATDVPM 562 D+NT++YV+QYPLRP WRPYEL E+C +VRVKP S +VEV+LS+D ++ NYD A + Sbjct: 116 DDNTKIYVLQYPLRPYWRPYELGERCDEVRVKPASAEVEVDLSIDVDSKNYDPDAPNAQR 175 Query: 563 ITKQTLS-SWRPPLTTSY 613 + KQTLS SW+PP TT Y Sbjct: 176 MKKQTLSTSWKPPQTTGY 193 >emb|CBI17549.3| unnamed protein product [Vitis vinifera] Length = 688 Score = 154 bits (390), Expect = 9e-36 Identities = 96/198 (48%), Positives = 120/198 (60%), Gaps = 24/198 (12%) Frame = +2 Query: 92 LDLDDLGLNDTQTTKPTLRPKSRFQPKSVK--LIPKPEPQLDTPPP----IKLIETKPLI 253 +DLDDL D P RP SRF PKS K LIPKPEP P + LI K Sbjct: 1 MDLDDL---DGPNRAPVRRP-SRFAPKSSKPKLIPKPEPSSQPEPSKLDDVTLINKKEED 56 Query: 254 ENKPDVSTKDE-------NEVLDTQM---------MDKDNEDEGDTVVREIDVYFTPSPL 385 P V DE N V++ ++ M++D+ DE D VVREIDV+FTP P Sbjct: 57 SQPPLVKKADEPFASSTQNGVIEMEVEAKAEVEDAMEEDDRDE-DPVVREIDVFFTPPPT 115 Query: 386 DNNTQLYVMQYPLRPSWRPYELNEKCQKVRVKPESGKVEVELSVD-NNSNYDDAATDVPM 562 D+NT++YV+QYPLRP WRPYEL E+C +VRVKP S +VEV+LS+D ++ NYD A + Sbjct: 116 DDNTKIYVLQYPLRPYWRPYELGERCDEVRVKPASAEVEVDLSIDVDSKNYDPDAPNAQR 175 Query: 563 ITKQTLS-SWRPPLTTSY 613 + KQTLS SW+PP TT Y Sbjct: 176 MKKQTLSTSWKPPQTTGY 193 >emb|CAN60111.1| hypothetical protein VITISV_023619 [Vitis vinifera] Length = 282 Score = 153 bits (386), Expect = 3e-35 Identities = 95/198 (47%), Positives = 119/198 (60%), Gaps = 24/198 (12%) Frame = +2 Query: 92 LDLDDLGLNDTQTTKPTLRPKSRFQPKSVK--LIPKPEPQLDTPPP----IKLIETKPLI 253 +DLDDL D P RP SRF PKS K LIPKPEP P + LI K Sbjct: 1 MDLDDL---DGPNRAPVRRP-SRFAPKSSKPKLIPKPEPSSQPEPSKLDDVTLINKKEED 56 Query: 254 ENKPDVSTKDE-------NEVLDTQM---------MDKDNEDEGDTVVREIDVYFTPSPL 385 P V DE N V++ ++ M++D+ DE D VVREIDV+FTP P Sbjct: 57 SQPPLVKKADEPFASSTQNGVIEMEVEAKAEVEDAMEEDDRDE-DPVVREIDVFFTPPPT 115 Query: 386 DNNTQLYVMQYPLRPSWRPYELNEKCQKVRVKPESGKVEVELSVD-NNSNYDDAATDVPM 562 D+NT++YV+QYPLRP WRPYEL E+C +VRVKP S +VEV+LS+D ++ NYD + Sbjct: 116 DDNTKIYVLQYPLRPYWRPYELGERCDEVRVKPASAEVEVDLSIDVDSKNYDPDVPNAQR 175 Query: 563 ITKQTLS-SWRPPLTTSY 613 + KQTLS SW+PP TT Y Sbjct: 176 MKKQTLSTSWKPPQTTGY 193 >ref|XP_002310208.1| predicted protein [Populus trichocarpa] gi|222853111|gb|EEE90658.1| predicted protein [Populus trichocarpa] Length = 667 Score = 148 bits (374), Expect = 7e-34 Identities = 88/176 (50%), Positives = 115/176 (65%), Gaps = 15/176 (8%) Frame = +2 Query: 134 KPTLRPKSRFQPK-SVKLIPKPEPQL-----DTPPPIK--LIETKPLIEN---KPDVSTK 280 +P +PK + +P+ SV + PKP+P + D P I L +T+ + N K ++ K Sbjct: 27 QPKSKPKPKPEPQESVPVAPKPDPSVSNTAEDAKPKIDDTLSKTETGVSNGNVKMEIDAK 86 Query: 281 DEN--EVLDTQMMDKDNE-DEGDTVVREIDVYFTPSPLDNNTQLYVMQYPLRPSWRPYEL 451 +E V + +MD D E DE D VVREIDVY+TPS +D NTQLYVMQYPLRP WRPYEL Sbjct: 87 EERGAAVKENDLMDVDKEEDEDDVVVREIDVYYTPS-VDPNTQLYVMQYPLRPCWRPYEL 145 Query: 452 NEKCQKVRVKPESGKVEVELSVDNNSNYDDAATDVPMITKQTL-SSWRPPLTTSYA 616 +E+C++VRVKPES +VEV+LS+D+ NYD + KQTL SSW PP T YA Sbjct: 146 DERCKEVRVKPESTEVEVDLSIDDTKNYDPDIASRLNMKKQTLSSSWSPPPATGYA 201 >ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit RPC5-like [Cucumis sativus] Length = 702 Score = 142 bits (357), Expect = 6e-32 Identities = 94/214 (43%), Positives = 123/214 (57%), Gaps = 37/214 (17%) Frame = +2 Query: 86 MELDLDDLGLNDTQTTKPTLRPKSRFQPK-SVKLIPKPEPQ-----LDTPPPIKL----- 232 M+LD D G T S+F+PK +++PKPEPQ L+ PPI Sbjct: 1 MDLDGLDEGSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPLTKLEPQPPISKPEVVE 60 Query: 233 --------------IETKPLIEN-------KPDVSTKDENEVLDTQMMDKDNEDEG---D 340 +E KP +E+ K DV TK E E + M+D D +E D Sbjct: 61 PDARVEEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVE--EDAMVDDDPIEEDASED 118 Query: 341 TVVREIDVYFTPSPLDNNTQLYVMQYPLRPSWRPYELNEKCQKVRVKPESGKVEVELSVD 520 VVREIDV FTPS +D+N++LYV+QYPLRP WRPYE +C +VRVKP +G+VEV+L+VD Sbjct: 119 MVVREIDVLFTPS-VDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEVDLNVD 177 Query: 521 -NNSNYDDAATDVPMITKQTL-SSWRPPLTTSYA 616 ++NYD+ A + KQTL SSW+PPL TSYA Sbjct: 178 IESNNYDNKADGTFQMKKQTLTSSWQPPLATSYA 211