BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00030520
         (617 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III s...   154   9e-36
emb|CBI17549.3| unnamed protein product [Vitis vinifera]              154   9e-36
emb|CAN60111.1| hypothetical protein VITISV_023619 [Vitis vinifera]   153   3e-35
ref|XP_002310208.1| predicted protein [Populus trichocarpa] gi|2...   148   7e-34
ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   142   6e-32

>ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Vitis
           vinifera]
          Length = 672

 Score =  154 bits (390), Expect = 9e-36
 Identities = 96/198 (48%), Positives = 120/198 (60%), Gaps = 24/198 (12%)
 Frame = +2

Query: 92  LDLDDLGLNDTQTTKPTLRPKSRFQPKSVK--LIPKPEPQLDTPPP----IKLIETKPLI 253
           +DLDDL   D     P  RP SRF PKS K  LIPKPEP     P     + LI  K   
Sbjct: 1   MDLDDL---DGPNRAPVRRP-SRFAPKSSKPKLIPKPEPSSQPEPSKLDDVTLINKKEED 56

Query: 254 ENKPDVSTKDE-------NEVLDTQM---------MDKDNEDEGDTVVREIDVYFTPSPL 385
              P V   DE       N V++ ++         M++D+ DE D VVREIDV+FTP P 
Sbjct: 57  SQPPLVKKADEPFASSTQNGVIEMEVEAKAEVEDAMEEDDRDE-DPVVREIDVFFTPPPT 115

Query: 386 DNNTQLYVMQYPLRPSWRPYELNEKCQKVRVKPESGKVEVELSVD-NNSNYDDAATDVPM 562
           D+NT++YV+QYPLRP WRPYEL E+C +VRVKP S +VEV+LS+D ++ NYD  A +   
Sbjct: 116 DDNTKIYVLQYPLRPYWRPYELGERCDEVRVKPASAEVEVDLSIDVDSKNYDPDAPNAQR 175

Query: 563 ITKQTLS-SWRPPLTTSY 613
           + KQTLS SW+PP TT Y
Sbjct: 176 MKKQTLSTSWKPPQTTGY 193


>emb|CBI17549.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  154 bits (390), Expect = 9e-36
 Identities = 96/198 (48%), Positives = 120/198 (60%), Gaps = 24/198 (12%)
 Frame = +2

Query: 92  LDLDDLGLNDTQTTKPTLRPKSRFQPKSVK--LIPKPEPQLDTPPP----IKLIETKPLI 253
           +DLDDL   D     P  RP SRF PKS K  LIPKPEP     P     + LI  K   
Sbjct: 1   MDLDDL---DGPNRAPVRRP-SRFAPKSSKPKLIPKPEPSSQPEPSKLDDVTLINKKEED 56

Query: 254 ENKPDVSTKDE-------NEVLDTQM---------MDKDNEDEGDTVVREIDVYFTPSPL 385
              P V   DE       N V++ ++         M++D+ DE D VVREIDV+FTP P 
Sbjct: 57  SQPPLVKKADEPFASSTQNGVIEMEVEAKAEVEDAMEEDDRDE-DPVVREIDVFFTPPPT 115

Query: 386 DNNTQLYVMQYPLRPSWRPYELNEKCQKVRVKPESGKVEVELSVD-NNSNYDDAATDVPM 562
           D+NT++YV+QYPLRP WRPYEL E+C +VRVKP S +VEV+LS+D ++ NYD  A +   
Sbjct: 116 DDNTKIYVLQYPLRPYWRPYELGERCDEVRVKPASAEVEVDLSIDVDSKNYDPDAPNAQR 175

Query: 563 ITKQTLS-SWRPPLTTSY 613
           + KQTLS SW+PP TT Y
Sbjct: 176 MKKQTLSTSWKPPQTTGY 193


>emb|CAN60111.1| hypothetical protein VITISV_023619 [Vitis vinifera]
          Length = 282

 Score =  153 bits (386), Expect = 3e-35
 Identities = 95/198 (47%), Positives = 119/198 (60%), Gaps = 24/198 (12%)
 Frame = +2

Query: 92  LDLDDLGLNDTQTTKPTLRPKSRFQPKSVK--LIPKPEPQLDTPPP----IKLIETKPLI 253
           +DLDDL   D     P  RP SRF PKS K  LIPKPEP     P     + LI  K   
Sbjct: 1   MDLDDL---DGPNRAPVRRP-SRFAPKSSKPKLIPKPEPSSQPEPSKLDDVTLINKKEED 56

Query: 254 ENKPDVSTKDE-------NEVLDTQM---------MDKDNEDEGDTVVREIDVYFTPSPL 385
              P V   DE       N V++ ++         M++D+ DE D VVREIDV+FTP P 
Sbjct: 57  SQPPLVKKADEPFASSTQNGVIEMEVEAKAEVEDAMEEDDRDE-DPVVREIDVFFTPPPT 115

Query: 386 DNNTQLYVMQYPLRPSWRPYELNEKCQKVRVKPESGKVEVELSVD-NNSNYDDAATDVPM 562
           D+NT++YV+QYPLRP WRPYEL E+C +VRVKP S +VEV+LS+D ++ NYD    +   
Sbjct: 116 DDNTKIYVLQYPLRPYWRPYELGERCDEVRVKPASAEVEVDLSIDVDSKNYDPDVPNAQR 175

Query: 563 ITKQTLS-SWRPPLTTSY 613
           + KQTLS SW+PP TT Y
Sbjct: 176 MKKQTLSTSWKPPQTTGY 193


>ref|XP_002310208.1| predicted protein [Populus trichocarpa] gi|222853111|gb|EEE90658.1|
           predicted protein [Populus trichocarpa]
          Length = 667

 Score =  148 bits (374), Expect = 7e-34
 Identities = 88/176 (50%), Positives = 115/176 (65%), Gaps = 15/176 (8%)
 Frame = +2

Query: 134 KPTLRPKSRFQPK-SVKLIPKPEPQL-----DTPPPIK--LIETKPLIEN---KPDVSTK 280
           +P  +PK + +P+ SV + PKP+P +     D  P I   L +T+  + N   K ++  K
Sbjct: 27  QPKSKPKPKPEPQESVPVAPKPDPSVSNTAEDAKPKIDDTLSKTETGVSNGNVKMEIDAK 86

Query: 281 DEN--EVLDTQMMDKDNE-DEGDTVVREIDVYFTPSPLDNNTQLYVMQYPLRPSWRPYEL 451
           +E    V +  +MD D E DE D VVREIDVY+TPS +D NTQLYVMQYPLRP WRPYEL
Sbjct: 87  EERGAAVKENDLMDVDKEEDEDDVVVREIDVYYTPS-VDPNTQLYVMQYPLRPCWRPYEL 145

Query: 452 NEKCQKVRVKPESGKVEVELSVDNNSNYDDAATDVPMITKQTL-SSWRPPLTTSYA 616
           +E+C++VRVKPES +VEV+LS+D+  NYD        + KQTL SSW PP  T YA
Sbjct: 146 DERCKEVRVKPESTEVEVDLSIDDTKNYDPDIASRLNMKKQTLSSSWSPPPATGYA 201


>ref|XP_004164787.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
           subunit RPC5-like [Cucumis sativus]
          Length = 702

 Score =  142 bits (357), Expect = 6e-32
 Identities = 94/214 (43%), Positives = 123/214 (57%), Gaps = 37/214 (17%)
 Frame = +2

Query: 86  MELDLDDLGLNDTQTTKPTLRPKSRFQPK-SVKLIPKPEPQ-----LDTPPPIKL----- 232
           M+LD  D G      T       S+F+PK   +++PKPEPQ     L+  PPI       
Sbjct: 1   MDLDGLDEGSQVPSRTSRFAPKSSKFKPKPKSEVVPKPEPQQPLTKLEPQPPISKPEVVE 60

Query: 233 --------------IETKPLIEN-------KPDVSTKDENEVLDTQMMDKDNEDEG---D 340
                         +E KP +E+       K DV TK E E  +  M+D D  +E    D
Sbjct: 61  PDARVEEKKEDGEEVEVKPKVESSLPNGVAKMDVETKSEVE--EDAMVDDDPIEEDASED 118

Query: 341 TVVREIDVYFTPSPLDNNTQLYVMQYPLRPSWRPYELNEKCQKVRVKPESGKVEVELSVD 520
            VVREIDV FTPS +D+N++LYV+QYPLRP WRPYE   +C +VRVKP +G+VEV+L+VD
Sbjct: 119 MVVREIDVLFTPS-VDSNSKLYVLQYPLRPRWRPYEFEGRCDEVRVKPSTGEVEVDLNVD 177

Query: 521 -NNSNYDDAATDVPMITKQTL-SSWRPPLTTSYA 616
             ++NYD+ A     + KQTL SSW+PPL TSYA
Sbjct: 178 IESNNYDNKADGTFQMKKQTLTSSWQPPLATSYA 211