BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00030513
         (416 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003621545.1| Pentatricopeptide repeat-containing protein ...   238   3e-61
emb|CBI27634.3| unnamed protein product [Vitis vinifera]              234   4e-60
ref|XP_002272556.1| PREDICTED: pentatricopeptide repeat-containi...   234   4e-60
ref|XP_003539071.1| PREDICTED: pentatricopeptide repeat-containi...   233   1e-59
ref|XP_004140525.1| PREDICTED: pentatricopeptide repeat-containi...   231   3e-59

>ref|XP_003621545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|87241489|gb|ABD33347.1| Pentatricopeptide repeat
            [Medicago truncatula] gi|355496560|gb|AES77763.1|
            Pentatricopeptide repeat-containing protein [Medicago
            truncatula]
          Length = 791

 Score =  238 bits (608), Expect = 3e-61
 Identities = 113/138 (81%), Positives = 129/138 (93%)
 Frame = -3

Query: 414  KLFEIFSENGIDPVSYTYNSMMTSFVKKGYFNEAWGILSEMGKKLCPADIATYNLVIQGL 235
            KLFEIF++ G+DPVSYTYNS+M+SFVKKGYFNEAW ILSEMG+KLCP DIATYN++IQGL
Sbjct: 606  KLFEIFTDAGVDPVSYTYNSIMSSFVKKGYFNEAWAILSEMGEKLCPTDIATYNMIIQGL 665

Query: 234  GKMGRADLASAVLDQLVKQGGYLDIVMYNTLINALGKAGRIEEANQMFGQMRQSGINPDI 55
            GKMGRADLASAVLD L+KQGGYLDIVMYNTLINALGKAGRI+E N+ F QM+ SGINPD+
Sbjct: 666  GKMGRADLASAVLDGLLKQGGYLDIVMYNTLINALGKAGRIDEVNKFFEQMKSSGINPDV 725

Query: 54   VTFNILIEIHSKSGRLKE 1
            VT+N LIEIHSK+GRLK+
Sbjct: 726  VTYNTLIEIHSKAGRLKD 743



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 43/136 (31%), Positives = 73/136 (53%), Gaps = 1/136 (0%)
 Frame = -3

Query: 414 KLFEIFSENGIDPVSYTYNSMMTSFVKKGYFNEAWGILSEMGKKLCPADIATYNLVIQGL 235
           ++F    +NG  P    YN ++    K    NE   +  +M ++   A  +TYN++I GL
Sbjct: 331 RIFNEMKDNGFRPGVLVYNCVLDGLFKAAKVNEGCQMFEKMAQEGVKASCSTYNILIHGL 390

Query: 234 GKMGRADLASAVLDQLVKQGGYLDIVMYNTLINALGKAGRIEEANQMFGQMRQSGINPDI 55
            K GR++    +   L K+G ++D + Y+ ++  L K G +EEA ++  +M   G + D+
Sbjct: 391 IKNGRSEAGYMLFCDLKKKGQFVDGITYSIVVLQLCKEGLLEEALELVEEMEARGFSVDL 450

Query: 54  VTF-NILIEIHSKSGR 10
           VT  ++LI IH K GR
Sbjct: 451 VTITSLLIGIH-KYGR 465



 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 2/137 (1%)
 Frame = -3

Query: 414 KLFEIFSE--NGIDPVSYTYNSMMTSFVKKGYFNEAWGILSEMGKKLCPADIATYNLVIQ 241
           KLF    E  N   P   TYNS+++   K G  N+A  +  E+       D  TY ++++
Sbjct: 259 KLFNEMKEDKNLFGPDMCTYNSVLSVLCKVGKINDALIVWDELKGCGYEPDEFTYTILVR 318

Query: 240 GLGKMGRADLASAVLDQLVKQGGYLDIVMYNTLINALGKAGRIEEANQMFGQMRQSGINP 61
           G  +  R D+A  + +++   G    +++YN +++ L KA ++ E  QMF +M Q G+  
Sbjct: 319 GCCRTYRMDVALRIFNEMKDNGFRPGVLVYNCVLDGLFKAAKVNEGCQMFEKMAQEGVKA 378

Query: 60  DIVTFNILIEIHSKSGR 10
              T+NILI    K+GR
Sbjct: 379 SCSTYNILIHGLIKNGR 395


>emb|CBI27634.3| unnamed protein product [Vitis vinifera]
          Length = 355

 Score =  234 bits (598), Expect = 4e-60
 Identities = 111/137 (81%), Positives = 126/137 (91%)
 Frame = -3

Query: 414 KLFEIFSENGIDPVSYTYNSMMTSFVKKGYFNEAWGILSEMGKKLCPADIATYNLVIQGL 235
           KLFEIFS  G+DPV YTYNSMMT+FVKKGYFNEAWG+  EMG+K+CP DIATYN++IQGL
Sbjct: 169 KLFEIFSNMGVDPVIYTYNSMMTAFVKKGYFNEAWGVFHEMGEKVCPPDIATYNVIIQGL 228

Query: 234 GKMGRADLASAVLDQLVKQGGYLDIVMYNTLINALGKAGRIEEANQMFGQMRQSGINPDI 55
           GKMGRADLASAVLD L+KQGGYLDIVMYNTLINALGKAGRI+EA ++F QMR SGINPD+
Sbjct: 229 GKMGRADLASAVLDMLMKQGGYLDIVMYNTLINALGKAGRIDEATKLFEQMRSSGINPDV 288

Query: 54  VTFNILIEIHSKSGRLK 4
           VTFN LIEIH+K+G+LK
Sbjct: 289 VTFNTLIEIHAKAGQLK 305


>ref|XP_002272556.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01570
            [Vitis vinifera]
          Length = 792

 Score =  234 bits (598), Expect = 4e-60
 Identities = 111/137 (81%), Positives = 126/137 (91%)
 Frame = -3

Query: 414  KLFEIFSENGIDPVSYTYNSMMTSFVKKGYFNEAWGILSEMGKKLCPADIATYNLVIQGL 235
            KLFEIFS  G+DPV YTYNSMMT+FVKKGYFNEAWG+  EMG+K+CP DIATYN++IQGL
Sbjct: 606  KLFEIFSNMGVDPVIYTYNSMMTAFVKKGYFNEAWGVFHEMGEKVCPPDIATYNVIIQGL 665

Query: 234  GKMGRADLASAVLDQLVKQGGYLDIVMYNTLINALGKAGRIEEANQMFGQMRQSGINPDI 55
            GKMGRADLASAVLD L+KQGGYLDIVMYNTLINALGKAGRI+EA ++F QMR SGINPD+
Sbjct: 666  GKMGRADLASAVLDMLMKQGGYLDIVMYNTLINALGKAGRIDEATKLFEQMRSSGINPDV 725

Query: 54   VTFNILIEIHSKSGRLK 4
            VTFN LIEIH+K+G+LK
Sbjct: 726  VTFNTLIEIHAKAGQLK 742



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 40/135 (29%), Positives = 67/135 (49%)
 Frame = -3

Query: 414 KLFEIFSENGIDPVSYTYNSMMTSFVKKGYFNEAWGILSEMGKKLCPADIATYNLVIQGL 235
           ++F     NG  P +  YN+++    K     EA  +  +M +    A   T+N+VI GL
Sbjct: 328 RIFNEMQYNGFCPDTIVYNTLLDGLFKARKVMEACQVFEKMVEDGVRASCWTHNIVICGL 387

Query: 234 GKMGRADLASAVLDQLVKQGGYLDIVMYNTLINALGKAGRIEEANQMFGQMRQSGINPDI 55
            + GRA     +   L K+G ++D + Y+ ++  L + G++EEA Q+  +M   G   D+
Sbjct: 388 FRNGRAAAGYTLFCDLKKKGKFVDGITYSIVVLQLCREGQLEEALQLVEEMEARGFVVDL 447

Query: 54  VTFNILIEIHSKSGR 10
           VT   L+    K GR
Sbjct: 448 VTITSLLIGFHKQGR 462



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 39/129 (30%), Positives = 65/129 (50%)
 Frame = -3

Query: 396 SENGIDPVSYTYNSMMTSFVKKGYFNEAWGILSEMGKKLCPADIATYNLVIQGLGKMGRA 217
           + +   P   TYNS++      G   +A  +  E+       D  TY ++IQG  K  R 
Sbjct: 264 NSSSFGPDLCTYNSLIRVLCLVGKVKDALIVWEELKGSGHEPDAFTYRILIQGCSKSYRM 323

Query: 216 DLASAVLDQLVKQGGYLDIVMYNTLINALGKAGRIEEANQMFGQMRQSGINPDIVTFNIL 37
           D A  + +++   G   D ++YNTL++ L KA ++ EA Q+F +M + G+     T NI+
Sbjct: 324 DDAMRIFNEMQYNGFCPDTIVYNTLLDGLFKARKVMEACQVFEKMVEDGVRASCWTHNIV 383

Query: 36  IEIHSKSGR 10
           I    ++GR
Sbjct: 384 ICGLFRNGR 392


>ref|XP_003539071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g01570-like [Glycine max]
          Length = 768

 Score =  233 bits (594), Expect = 1e-59
 Identities = 109/138 (78%), Positives = 128/138 (92%)
 Frame = -3

Query: 414 KLFEIFSENGIDPVSYTYNSMMTSFVKKGYFNEAWGILSEMGKKLCPADIATYNLVIQGL 235
           KLFEIFS+ G+DPVSYTYNS+M+SFVKKGYF EAW IL+EMG+K CP DIATYN++IQGL
Sbjct: 583 KLFEIFSDAGVDPVSYTYNSIMSSFVKKGYFAEAWAILTEMGEKFCPTDIATYNMIIQGL 642

Query: 234 GKMGRADLASAVLDQLVKQGGYLDIVMYNTLINALGKAGRIEEANQMFGQMRQSGINPDI 55
           GKMGRADLASAVLD+L++QGGYLDIVMYNTLINALGKA RI+E N++F QMR SGINPD+
Sbjct: 643 GKMGRADLASAVLDRLLRQGGYLDIVMYNTLINALGKASRIDEVNKLFEQMRSSGINPDV 702

Query: 54  VTFNILIEIHSKSGRLKE 1
           VT+N LIE+HSK+GRLK+
Sbjct: 703 VTYNTLIEVHSKAGRLKD 720



 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 1/131 (0%)
 Frame = -3

Query: 414 KLFEIFSENGIDPVSYTYNSMMTSFVKKGYFNEAWGILSEMGKKLCPADIATYNLVIQGL 235
           ++F     NG  P +  YNS++    K     EA  +  +M ++       TYN++I GL
Sbjct: 306 RIFNQMQSNGFRPDTLAYNSLLDGHFKATKVMEACQLFEKMVQEGVRPSCWTYNILIHGL 365

Query: 234 GKMGRADLASAVLDQLVKQGGYLDIVMYNTLINALGKAGRIEEANQMFGQMRQSGINPDI 55
            + GRA+ A  +   L K+G ++D + Y+ ++  L K G++EEA Q+  +M   G   D+
Sbjct: 366 FRNGRAEAAYTMFCDLKKKGQFVDGITYSIVVLQLCKEGQLEEALQLVEEMESRGFVVDL 425

Query: 54  VTF-NILIEIH 25
           VT  ++LI IH
Sbjct: 426 VTITSLLISIH 436



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 40/125 (32%), Positives = 66/125 (52%)
 Frame = -3

Query: 384 IDPVSYTYNSMMTSFVKKGYFNEAWGILSEMGKKLCPADIATYNLVIQGLGKMGRADLAS 205
           + P   TYNS++T+  + G  ++A  +  E+       D  TY  +IQ   K  R + A 
Sbjct: 246 VAPDLCTYNSLITALCRLGKVDDAITVYEELNGSAHQPDRFTYTNLIQACSKTYRMEDAI 305

Query: 204 AVLDQLVKQGGYLDIVMYNTLINALGKAGRIEEANQMFGQMRQSGINPDIVTFNILIEIH 25
            + +Q+   G   D + YN+L++   KA ++ EA Q+F +M Q G+ P   T+NILI   
Sbjct: 306 RIFNQMQSNGFRPDTLAYNSLLDGHFKATKVMEACQLFEKMVQEGVRPSCWTYNILIHGL 365

Query: 24  SKSGR 10
            ++GR
Sbjct: 366 FRNGR 370


>ref|XP_004140525.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01570-like
            [Cucumis sativus] gi|449523383|ref|XP_004168703.1|
            PREDICTED: pentatricopeptide repeat-containing protein
            At4g01570-like [Cucumis sativus]
          Length = 803

 Score =  231 bits (590), Expect = 3e-59
 Identities = 105/138 (76%), Positives = 131/138 (94%)
 Frame = -3

Query: 414  KLFEIFSENGIDPVSYTYNSMMTSFVKKGYFNEAWGILSEMGKKLCPADIATYNLVIQGL 235
            KLFEIFS+ G++PV YTYNSM++SFVKKGYF++AWGI +EMG+ +CPADIATYN++IQGL
Sbjct: 619  KLFEIFSDMGVNPVKYTYNSMLSSFVKKGYFHQAWGIFNEMGENVCPADIATYNVIIQGL 678

Query: 234  GKMGRADLASAVLDQLVKQGGYLDIVMYNTLINALGKAGRIEEANQMFGQMRQSGINPDI 55
            GKMGRADLAS+VL++L++QGGYLDIVMYNTLINALGKAGR+++ N++FGQMR SGINPD+
Sbjct: 679  GKMGRADLASSVLEKLMEQGGYLDIVMYNTLINALGKAGRMDDVNKLFGQMRNSGINPDV 738

Query: 54   VTFNILIEIHSKSGRLKE 1
            VTFN LIE+HSK+GRLK+
Sbjct: 739  VTFNTLIEVHSKAGRLKD 756



 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 41/134 (30%), Positives = 66/134 (49%)
 Frame = -3

Query: 411 LFEIFSENGIDPVSYTYNSMMTSFVKKGYFNEAWGILSEMGKKLCPADIATYNLVIQGLG 232
           +F     NG+ P +  YNS++    K     EA  +  +M ++   A   TYN++I GL 
Sbjct: 342 IFNEMEYNGLIPDTIVYNSLLNGLFKARKVTEACQLFDKMVQEDVRASPWTYNILIDGLF 401

Query: 231 KMGRADLASAVLDQLVKQGGYLDIVMYNTLINALGKAGRIEEANQMFGQMRQSGINPDIV 52
           + GRA+    +   L K+G  +D V Y+ +I  L K   +EEA Q+  +M   G   D++
Sbjct: 402 RNGRAEAGYTLFCDLKKKGQIVDAVTYSIIILQLCKERLLEEALQLVEEMEARGFVVDLI 461

Query: 51  TFNILIEIHSKSGR 10
           T   L+    K G+
Sbjct: 462 TITSLLIAMHKQGQ 475



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 39/119 (32%), Positives = 64/119 (53%)
 Frame = -3

Query: 366 TYNSMMTSFVKKGYFNEAWGILSEMGKKLCPADIATYNLVIQGLGKMGRADLASAVLDQL 187
           TYNS++      G   +A  +  E+       D  TY ++IQG  K  R D A+ + +++
Sbjct: 287 TYNSIIHVLCLVGKVKDALIVWEELKGSGHEPDAFTYRIIIQGCCKSCRMDDATMIFNEM 346

Query: 186 VKQGGYLDIVMYNTLINALGKAGRIEEANQMFGQMRQSGINPDIVTFNILIEIHSKSGR 10
              G   D ++YN+L+N L KA ++ EA Q+F +M Q  +     T+NILI+   ++GR
Sbjct: 347 EYNGLIPDTIVYNSLLNGLFKARKVTEACQLFDKMVQEDVRASPWTYNILIDGLFRNGR 405