BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00029984
         (448 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002530515.1| pentatricopeptide repeat-containing protein,...   137   7e-31
ref|XP_002309408.1| predicted protein [Populus trichocarpa] gi|2...   128   3e-30
ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat...   117   2e-29
ref|NP_198573.1| pentatricopeptide repeat-containing protein [Ar...   116   2e-28
ref|XP_002870540.1| pentatricopeptide repeat-containing protein ...   114   4e-28

>ref|XP_002530515.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223529919|gb|EEF31847.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 359

 Score =  137 bits (346), Expect = 7e-31
 Identities = 64/111 (57%), Positives = 83/111 (74%), Gaps = 5/111 (4%)
 Frame = -1

Query: 328 PDKYTFPSFIKVCSKELALRDGCVV-----RCGFQSDVLVGNSLIDLYGKCKEIVCARKV 164
           PDKYT+PS I+V S E  L++G +V     RCG   DV VG+SL+D YGKCKEI+ ARK+
Sbjct: 10  PDKYTYPSLIRVFSSEFRLKEGGIVHGSAIRCGVSDDVYVGSSLVDFYGKCKEILSARKM 69

Query: 163 FDEMCDTSEATWTAMMVGYLNFGDLEGAKVIFDEMPKRDIWSWNAMVD*WV 11
           FDEM   +  +WTAM+VGYLN GDL  A+ +FD+MP+R++ SWNAM+D WV
Sbjct: 70  FDEMTQKNVVSWTAMVVGYLNVGDLGNAERLFDQMPERNLKSWNAMIDGWV 120



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 26/66 (39%), Positives = 46/66 (69%)
 Frame = -1

Query: 220 NSLIDLYGKCKEIVCARKVFDEMCDTSEATWTAMMVGYLNFGDLEGAKVIFDEMPKRDIW 41
           N++ID + K  +++ ARKVFDEM + +  ++T M+ GY   GD+  A+ +F+  PKRD+ 
Sbjct: 113 NAMIDGWVKAGDLLLARKVFDEMPERNVVSFTVMIDGYAKAGDMTTARDLFERAPKRDVI 172

Query: 40  SWNAMV 23
           +W+A++
Sbjct: 173 AWSALI 178


>ref|XP_002309408.1| predicted protein [Populus trichocarpa] gi|222855384|gb|EEE92931.1|
           predicted protein [Populus trichocarpa]
          Length = 547

 Score =  128 bits (321), Expect(2) = 3e-30
 Identities = 61/108 (56%), Positives = 79/108 (73%), Gaps = 5/108 (4%)
 Frame = -1

Query: 331 LPDKYTFPSFIKVCSKELALRDGCVV-----RCGFQSDVLVGNSLIDLYGKCKEIVCARK 167
           L DKYT+P  IKVCS EL L++G +V     RCG   DV VG+SLI  YGKCKEI+ ARK
Sbjct: 102 LSDKYTYPLLIKVCSNELRLKEGEIVHGSAIRCGVSDDVYVGSSLISFYGKCKEILSARK 161

Query: 166 VFDEMCDTSEATWTAMMVGYLNFGDLEGAKVIFDEMPKRDIWSWNAMV 23
           VFDE+ + +  +WTAM+ GY + GDLE AK +F+ MP+R++ SWNAM+
Sbjct: 162 VFDEIPERNVVSWTAMVAGYASVGDLENAKRVFERMPERNLPSWNAMI 209



 Score = 28.9 bits (63), Expect(2) = 3e-30
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 446 SVFERVNVPNIYLWNNLLKSHCENSSLFITIVLFKCLNSS 327
           S+F R+  P+ +L+N LLK   +NS    T  LF  +  S
Sbjct: 59  SIFNRLLNPSTFLYNILLKIFSKNSQFIDTFSLFYRMKQS 98



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 26/66 (39%), Positives = 45/66 (68%)
 Frame = -1

Query: 220 NSLIDLYGKCKEIVCARKVFDEMCDTSEATWTAMMVGYLNFGDLEGAKVIFDEMPKRDIW 41
           N++I   GK  ++  ARKVFDEM + +  ++T M+ GY   GD+  A+ +FDE P++D+ 
Sbjct: 206 NAMISGLGKAGDLSGARKVFDEMVERNVVSFTVMIDGYAKVGDMASARALFDEAPEKDVV 265

Query: 40  SWNAMV 23
           +W+A++
Sbjct: 266 AWSALI 271


>ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Glycine max]
          Length = 566

 Score =  117 bits (292), Expect(2) = 2e-29
 Identities = 57/112 (50%), Positives = 74/112 (66%), Gaps = 5/112 (4%)
 Frame = -1

Query: 331 LPDKYTFPSFIKVCSKELALRDG-----CVVRCGFQSDVLVGNSLIDLYGKCKEIVCARK 167
           LPD +T+PS IK CS     R+G        RCG   D+ VG SLID+YGKC EI  ARK
Sbjct: 125 LPDSFTYPSVIKACSGTCKAREGKSLHGSAFRCGVDQDLYVGTSLIDMYGKCGEIADARK 184

Query: 166 VFDEMCDTSEATWTAMMVGYLNFGDLEGAKVIFDEMPKRDIWSWNAMVD*WV 11
           VFD M D +  +WTAM+VGY+  GD+  A+ +FDEMP R++ SWN+M+  +V
Sbjct: 185 VFDGMSDRNVVSWTAMLVGYVAVGDVVEARKLFDEMPHRNVASWNSMLQGFV 236



 Score = 37.4 bits (85), Expect(2) = 2e-29
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -3

Query: 446 SVFERVNVPNIYLWNNLLKSHCENSSLFITIVLF 345
           SVF RV  P+  LWN L+KSHC+ +    T+  F
Sbjct: 83  SVFHRVLAPSTVLWNTLIKSHCQKNLFSHTLSAF 116


>ref|NP_198573.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75170664|sp|Q9FHR3.1|PP403_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At5g37570 gi|9757967|dbj|BAB08303.1| unnamed
           protein product [Arabidopsis thaliana]
           gi|332006824|gb|AED94207.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 550

 Score =  116 bits (290), Expect(2) = 2e-28
 Identities = 55/108 (50%), Positives = 75/108 (69%), Gaps = 5/108 (4%)
 Frame = -1

Query: 328 PDKYTFPSFIKVCSKELALR-----DGCVVRCGFQSDVLVGNSLIDLYGKCKEIVCARKV 164
           PD+YTFP  +KVCS    +R      G V+R GF  DV+VG S +D YGKCK++  ARKV
Sbjct: 108 PDEYTFPLVMKVCSNNGQVRVGSSVHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKV 167

Query: 163 FDEMCDTSEATWTAMMVGYLNFGDLEGAKVIFDEMPKRDIWSWNAMVD 20
           F EM + +  +WTA++V Y+  G+LE AK +FD MP+R++ SWNA+VD
Sbjct: 168 FGEMPERNAVSWTALVVAYVKSGELEEAKSMFDLMPERNLGSWNALVD 215



 Score = 34.7 bits (78), Expect(2) = 2e-28
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -3

Query: 446 SVFERVNVPNIYLWNNLLKSHCENSSLFITI 354
           SVFERV  P  YLWN+L+K +      F T+
Sbjct: 64  SVFERVPSPGTYLWNHLIKGYSNKFLFFETV 94


>ref|XP_002870540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297316376|gb|EFH46799.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 547

 Score =  114 bits (284), Expect(2) = 4e-28
 Identities = 53/108 (49%), Positives = 74/108 (68%), Gaps = 5/108 (4%)
 Frame = -1

Query: 328 PDKYTFPSFIKVCSKELALR-----DGCVVRCGFQSDVLVGNSLIDLYGKCKEIVCARKV 164
           PD+YTFP  +KVCS     R      G V+R GF  DV++G S +D YGKCK++  ARKV
Sbjct: 105 PDEYTFPLVMKVCSNNAEFRVGSTVHGLVLRIGFDKDVVLGTSFVDFYGKCKDLCSARKV 164

Query: 163 FDEMCDTSEATWTAMMVGYLNFGDLEGAKVIFDEMPKRDIWSWNAMVD 20
           F EM + +  +WTA++V Y+  G+LE AK +FD MP+R++ +WNA+VD
Sbjct: 165 FGEMPERNVVSWTALIVAYVKSGELEEAKRMFDLMPERNLGTWNALVD 212



 Score = 35.8 bits (81), Expect(2) = 4e-28
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -3

Query: 446 SVFERVNVPNIYLWNNLLKSHCENSSLFITIVL 348
           SVFERV  P  YLWN+L+K +      F T+ L
Sbjct: 61  SVFERVPYPGTYLWNHLIKGYSNKFLFFETVSL 93