BLASTX nr result

ID: Coptis21_contig00029972 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00029972
         (413 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002314711.1| predicted protein [Populus trichocarpa] gi|2...    57   2e-06
ref|XP_002517210.1| conserved hypothetical protein [Ricinus comm...    56   3e-06

>ref|XP_002314711.1| predicted protein [Populus trichocarpa] gi|222863751|gb|EEF00882.1|
           predicted protein [Populus trichocarpa]
          Length = 365

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 30/53 (56%), Positives = 39/53 (73%), Gaps = 4/53 (7%)
 Frame = +2

Query: 101 VFKGKNKEHAEKNI---AVKKVSTT-KEVIRKYLKKVKPLYDKFSQKQKPEVG 247
           VFK +NK     N+   +VK++S T KEVIRKY KKVKPLY+K SQKQ+ ++G
Sbjct: 167 VFKKENKSRENDNVPGSSVKRISVTAKEVIRKYFKKVKPLYEKLSQKQQQKMG 219


>ref|XP_002517210.1| conserved hypothetical protein [Ricinus communis]
           gi|223543845|gb|EEF45373.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 350

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 26/45 (57%), Positives = 34/45 (75%)
 Frame = +2

Query: 113 KNKEHAEKNIAVKKVSTTKEVIRKYLKKVKPLYDKFSQKQKPEVG 247
           KN+E+   N   +  +T KEVIRKYLKKVKPLY+K SQKQ+ ++G
Sbjct: 174 KNRENEGSNSVKRMSATAKEVIRKYLKKVKPLYEKLSQKQQQKMG 218


Top