BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00029938
         (646 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...   160   1e-37
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     147   2e-33
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]   144   1e-32
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   144   1e-32
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   142   1e-32

>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score =  160 bits (406), Expect = 1e-37
 Identities = 74/124 (59%), Positives = 99/124 (79%), Gaps = 1/124 (0%)
 Frame = -1

Query: 646 LAERMNRMLLEKARCLLSNASLGKELWADAVAMACYLYNRSPVPVIDCKTPYEVWTGKP- 470
           ++ERMN++L+EK RC+LSNA LG++ WA+AV  A +L NR P   ID KTP EVW+GKP 
Sbjct: 573 VSERMNKILVEKVRCMLSNAELGRKFWAEAVTYAQHLVNRLPSSAIDGKTPLEVWSGKPA 632

Query: 469 TDYDILHVFGSSAYYHMKDNKLDSKAKKATFLGYAKGGKGYRLWCLENHKFLVNSEVTFD 290
           TDYD LHVFGS AYYH+ ++KLD +AKKA F+G++ G KGYRLWCLE  K +++ +VTFD
Sbjct: 633 TDYDSLHVFGSIAYYHVIESKLDPRAKKALFMGFSPGVKGYRLWCLEAKKTIISRDVTFD 692

Query: 289 ETSL 278
           E+++
Sbjct: 693 ESAM 696


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  147 bits (370), Expect = 2e-33
 Identities = 68/121 (56%), Positives = 87/121 (71%)
 Frame = -1

Query: 646 LAERMNRMLLEKARCLLSNASLGKELWADAVAMACYLYNRSPVPVIDCKTPYEVWTGKPT 467
           +AERMNR ++ KARC+LSNA L K+ WA+AV+ ACYL NRSP   ID KTP EVW+G PT
Sbjct: 567 VAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPIEVWSGSPT 626

Query: 466 DYDILHVFGSSAYYHMKDNKLDSKAKKATFLGYAKGGKGYRLWCLENHKFLVNSEVTFDE 287
           +Y  L VFG +AY H+ + KL+ +A K  FLGYA G KGY+LWC E  K +++  V F E
Sbjct: 627 NYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYASGVKGYKLWCPETKKVVISRNVVFHE 686

Query: 286 T 284
           +
Sbjct: 687 S 687


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score =  144 bits (364), Expect = 1e-32
 Identities = 67/125 (53%), Positives = 91/125 (72%), Gaps = 2/125 (1%)
 Frame = -1

Query: 646  LAERMNRMLLEKARCLLSNASLGKELWADAVAMACYLYNRSPVPVIDCKTPYEVWTGKPT 467
            +AERMN+ L+++ARC+  +A L K+ WA+AV  A YL NRSP   ID KTP EVW+GKP+
Sbjct: 694  VAERMNQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQEVWSGKPS 753

Query: 466  DYDILHVFGSSAYYHMKDNKLDSKAKKATFLGYAKGGKGYRLWCLENH--KFLVNSEVTF 293
            +Y  L +FG  AY H+ D KL+ +A K  FLGYA G KGYRLWC E+   KF+++ +VTF
Sbjct: 754  NYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDVTF 813

Query: 292  DETSL 278
            DE+++
Sbjct: 814  DESAM 818


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  144 bits (364), Expect = 1e-32
 Identities = 67/125 (53%), Positives = 91/125 (72%), Gaps = 2/125 (1%)
 Frame = -1

Query: 646  LAERMNRMLLEKARCLLSNASLGKELWADAVAMACYLYNRSPVPVIDCKTPYEVWTGKPT 467
            +AERMN+ L+++ARC+  +A L K+ WA+AV  A YL NRSP   ID KTP EVW+GKP+
Sbjct: 907  VAERMNQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQEVWSGKPS 966

Query: 466  DYDILHVFGSSAYYHMKDNKLDSKAKKATFLGYAKGGKGYRLWCLENH--KFLVNSEVTF 293
            +Y  L +FG  AY H+ D KL+ +A K  FLGYA G KGYRLWC E+   KF+++ +VTF
Sbjct: 967  NYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDVTF 1026

Query: 292  DETSL 278
            DE+++
Sbjct: 1027 DESAM 1031


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  142 bits (357), Expect(2) = 1e-32
 Identities = 63/123 (51%), Positives = 85/123 (69%)
 Frame = -1

Query: 646 LAERMNRMLLEKARCLLSNASLGKELWADAVAMACYLYNRSPVPVIDCKTPYEVWTGKPT 467
           +AERMN+ LLE+ARC+LSNA L +  WA+AV+ ACYL NR P   I CKTP E+W+GK  
Sbjct: 573 VAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGKAA 632

Query: 466 DYDILHVFGSSAYYHMKDNKLDSKAKKATFLGYAKGGKGYRLWCLENHKFLVNSEVTFDE 287
           DY  L  FG +AYYH+ + KL+ +AKK  F+GY  G KG+R+W     + +++  V FDE
Sbjct: 633 DYSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEKRVIMSRNVVFDE 692

Query: 286 TSL 278
           + L
Sbjct: 693 SPL 695



 Score = 23.9 bits (50), Expect(2) = 1e-32
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
 Frame = -3

Query: 251 KAGNSGDSIESQVIEIEASEDAKESEVLSERP---IXXXXXXXXXXXQALARLKPKR-SV 84
           + G+    +E QVI+ E+  D KE E   + P               Q++A+ +P+R  V
Sbjct: 707 ETGSLDKQVEFQVIQNES--DLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGV 764

Query: 83  KQVTKYGHDKPVKHYGHPDSVAYALNI 3
           +  T+YG +         D V YAL +
Sbjct: 765 RPPTRYGFE---------DMVGYALQV 782