BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00029910
         (823 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containi...   243   4e-62
ref|XP_002528578.1| pentatricopeptide repeat-containing protein,...   243   4e-62
ref|XP_002316451.1| predicted protein [Populus trichocarpa] gi|2...   239   5e-61
ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containi...   191   1e-46
ref|NP_196771.1| pentatricopeptide repeat-containing protein [Ar...   181   2e-43

>ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
            mitochondrial-like [Vitis vinifera]
          Length = 819

 Score =  243 bits (620), Expect = 4e-62
 Identities = 122/244 (50%), Positives = 169/244 (69%), Gaps = 1/244 (0%)
 Frame = +1

Query: 1    GLCKEGSVAQAEELAHSLPDKGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEP 180
            GLCK+G V +AE LA  +  KG+S D +TY+++I GY + GN QKALELY+TMK   I+P
Sbjct: 576  GLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKP 635

Query: 181  SLYTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALH 360
            +L TYH LI G G EG V  V+ ++Q+ML+ NL PDRV+Y+ALI C+ ++GDV+KA +LH
Sbjct: 636  TLNTYHRLIAGCGKEGLVL-VEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLH 694

Query: 361  QEMVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKA 540
              M  +GI PD+M YN  I+ H +EG + +  +L NDM+++ ++P + TY  LI GHCK 
Sbjct: 695  SAMEAQGIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHCKL 754

Query: 541  KDFSGAYVWCREMFEKGFIPSFNIYNELMTGLQNGGMLQQAEVL-NELWEKGVAEHTVSD 717
            KDF GAYVW REMFE GF PS +I + L+TGL+  G    A+V+ +E+  KG  +    +
Sbjct: 755  KDFDGAYVWYREMFENGFTPSVSICDNLITGLREEGRSHDADVICSEMNMKGKDDCRADE 814

Query: 718  DLSA 729
            D SA
Sbjct: 815  DASA 818



 Score =  128 bits (322), Expect = 1e-27
 Identities = 69/233 (29%), Positives = 134/233 (57%), Gaps = 1/233 (0%)
 Frame = +1

Query: 4    LCKEGSVAQAEELAHSLPDKGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEPS 183
            LCKEG++ +AEE+     + G++P  V ++TI+ GY  +G+  KA    + M+++ + P+
Sbjct: 367  LCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPN 426

Query: 184  LYTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALHQ 363
              TY++L++ F    ++++ +   + M+E+ + P+   Y+ LI  + +     + F + +
Sbjct: 427  HVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILE 486

Query: 364  EMVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKAK 543
            EM +KG+ P+ ++Y   I C C++ N+ EA  +  DM  + V+P++  Y+ LI+G C A 
Sbjct: 487  EMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAG 546

Query: 544  DFSGAYVWCREMFEKGFIPSFNIYNELMTGLQNGGMLQQAEVL-NELWEKGVA 699
                A+ +  EM  +  +P+   YN L+ GL   G + +AE L +E+  KG++
Sbjct: 547  KLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLS 599



 Score =  120 bits (300), Expect = 5e-25
 Identities = 68/235 (28%), Positives = 125/235 (53%), Gaps = 3/235 (1%)
 Frame = +1

Query: 1   GLCKEGSVAQAEELAHSLPDKGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEP 180
           GLCKE  +  AE+L   + D+ V+P+ +TY+T+I GY  +G  ++A  + + MK   +EP
Sbjct: 226 GLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEP 285

Query: 181 SLYTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALH 360
           ++ T+++L+ G      +++   + ++M      PDR  Y+ L   H K G+V  +  L 
Sbjct: 286 TIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLS 345

Query: 361 QEMVEKGIGPDRMAYNSRIICH--CREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHC 534
           +E V KG+    + Y   I+ +  C+EGN+++A  +        + P  V ++T++ G+C
Sbjct: 346 EEAVRKGV--QILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYC 403

Query: 535 KAKDFSGAYVWCREMFEKGFIPSFNIYNELMTGLQNGGMLQQAE-VLNELWEKGV 696
           +  D + AY    +M   G  P+   YN L+        +++AE  + ++ EKGV
Sbjct: 404 QVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGV 458



 Score =  112 bits (279), Expect = 1e-22
 Identities = 66/233 (28%), Positives = 119/233 (51%), Gaps = 1/233 (0%)
 Frame = +1

Query: 1   GLCKEGSVAQAEELAHSLPDKGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEP 180
           GLC+   + +A+ +   +   G  PD  TY+T+  G+   GN   ++ L +      ++ 
Sbjct: 296 GLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQI 355

Query: 181 SLYTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALH 360
             YT   L+     EG+++K +++ +  LE  LAP  V ++ ++  + + GD+ KA+   
Sbjct: 356 LDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTI 415

Query: 361 QEMVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKA 540
           ++M   G+ P+ + YNS +   C   N++EA      M  K VLP+  TY+TLI+G+ ++
Sbjct: 416 EKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRS 475

Query: 541 KDFSGAYVWCREMFEKGFIPSFNIYNELMTGLQNGGMLQQAEV-LNELWEKGV 696
             F   +    EM +KG  P+   Y  L+  L     + +AEV L ++  +GV
Sbjct: 476 CLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGV 528



 Score =  108 bits (271), Expect = 1e-21
 Identities = 63/222 (28%), Positives = 110/222 (49%), Gaps = 1/222 (0%)
 Frame = +1

Query: 37  ELAHSLPDKGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEPSLYTYHALIRGF 216
           +L   + + G+ PD   Y   I     LG+ ++A+EL   MK   + P ++ Y+ +I G 
Sbjct: 168 QLFSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGL 227

Query: 217 GNEGDVQKVDDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALHQEMVEKGIGPDR 396
             E  ++  + L  +ML++ +AP+R+ Y+ LI  + K G + +AF + + M  + + P  
Sbjct: 228 CKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTI 287

Query: 397 MAYNSRIICHCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKAKDFSGAYVWCRE 576
           + +NS +   CR   ++EA  +  +MEV   +P   TY+TL +GH K  +   +     E
Sbjct: 288 ITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEE 347

Query: 577 MFEKGF-IPSFNIYNELMTGLQNGGMLQQAEVLNELWEKGVA 699
              KG  I  +     L    + G M +  EVL +  E G+A
Sbjct: 348 AVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLA 389



 Score =  101 bits (252), Expect = 2e-19
 Identities = 59/235 (25%), Positives = 118/235 (50%)
 Frame = +1

Query: 7    CKEGSVAQAEELAHSLPDKGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEPSL 186
            C+  ++ +AE+    + +KGV P+  TY+T+I GY       +  ++ + M+   ++P++
Sbjct: 438  CEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNV 497

Query: 187  YTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALHQE 366
             +Y  LI     + ++ + + +  DM+ + + P+  +Y+ LI      G ++ AF    E
Sbjct: 498  ISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDE 557

Query: 367  MVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKAKD 546
            MV + I P  + YN  I   C++G V EA +L +++  K +    +TY++LI G+  A +
Sbjct: 558  MVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGN 617

Query: 547  FSGAYVWCREMFEKGFIPSFNIYNELMTGLQNGGMLQQAEVLNELWEKGVAEHTV 711
               A      M + G  P+ N Y+ L+ G    G++   ++  E+ +  +    V
Sbjct: 618  VQKALELYETMKKSGIKPTLNTYHRLIAGCGKEGLVLVEKIYQEMLQMNLVPDRV 672



 Score = 90.9 bits (224), Expect = 3e-16
 Identities = 53/184 (28%), Positives = 94/184 (51%), Gaps = 1/184 (0%)
 Frame = +1

Query: 133 KALELYQTMKSLFIEPSLYTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALI 312
           ++ ELY  MK   + PS+ + +  +    +    +    L  +++E  L PD+ +Y   I
Sbjct: 130 ESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAI 189

Query: 313 RCHAKYGDVRKAFALHQEMVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEVL 492
           +   K GD+++A  L   M   G+ P    YN  I   C+E  +++A  LF++M  + V 
Sbjct: 190 QAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVA 249

Query: 493 PSSVTYSTLIEGHCKAKDFSGAYVWCREMFEKGFIPSFNIYNELMTGLQNGGMLQQAE-V 669
           P+ +TY+TLI+G+CK      A+     M  +   P+   +N L+ GL    M+++A+ V
Sbjct: 250 PNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRV 309

Query: 670 LNEL 681
           L E+
Sbjct: 310 LEEM 313



 Score = 89.0 bits (219), Expect = 1e-15
 Identities = 59/233 (25%), Positives = 112/233 (48%), Gaps = 2/233 (0%)
 Frame = +1

Query: 4   LCKEGS-VAQAEELAHSLPDKGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEP 180
           +C E   V+++ EL   +   GV P   + +  +    +    +  L+L+  +    + P
Sbjct: 121 ICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESGLRP 180

Query: 181 SLYTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALH 360
             + Y   I+     GD+++  +L   M    ++P   VY+ +I    K   ++ A  L 
Sbjct: 181 DQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLF 240

Query: 361 QEMVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKA 540
            EM+++ + P+R+ YN+ I  +C+ G ++EA ++   M+V+ V P+ +T+++L+ G C+A
Sbjct: 241 DEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRA 300

Query: 541 KDFSGAYVWCREMFEKGFIPSFNIYNELMTG-LQNGGMLQQAEVLNELWEKGV 696
           +    A     EM   GF+P    Y  L  G L+ G +     +  E   KGV
Sbjct: 301 QMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGV 353


>ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223531974|gb|EEF33786.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 817

 Score =  243 bits (620), Expect = 4e-62
 Identities = 119/249 (47%), Positives = 172/249 (69%), Gaps = 2/249 (0%)
 Frame = +1

Query: 1    GLCKEGSVAQAEELAHSLPDKGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEP 180
            GLCK+G + +AE+    +   G SPD +TY+++I GY N GN  K L LY+TMK+L I+P
Sbjct: 570  GLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKP 629

Query: 181  SLYTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALH 360
            ++ TYH LI G   EG ++ V+ L+ +ML+ NL PDRVVY+A+I C+A+ G+ +KA++LH
Sbjct: 630  TVRTYHPLISGCSKEG-IELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLH 688

Query: 361  QEMVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKA 540
            Q M+++GI PD+M YNS I+ H REG +     L N+M+ KE+ P + TY  L++GHC  
Sbjct: 689  QGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKADTYDILVKGHCDL 748

Query: 541  KDFSGAYVWCREMFEKGFIPSFNIYNELMTGLQNGGMLQQAEVL-NELWEKGVAEHTVS- 714
            KDFSGAYVW REM E  F+P+ +I NEL  GL+  G LQ+ +V+ +E+  KG+  H  S 
Sbjct: 749  KDFSGAYVWYREMVENNFLPNASICNELTAGLEQEGRLQEVQVICSEMNVKGIINHWPSK 808

Query: 715  DDLSAAAMM 741
            +++SA A M
Sbjct: 809  EEISAVAKM 817



 Score =  129 bits (323), Expect = 1e-27
 Identities = 70/222 (31%), Positives = 118/222 (53%)
 Frame = +1

Query: 1    GLCKEGSVAQAEELAHSLPDKGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEP 180
            GLCK+G V +AEE+     + G+  D V Y+T + GY  +G+  KA+   + M+S  + P
Sbjct: 360  GLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRP 419

Query: 181  SLYTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALH 360
            +  T+++LI  F +  ++ K ++  + M E+ + P    Y+ LI  + K     + F + 
Sbjct: 420  NSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQIL 479

Query: 361  QEMVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKA 540
            ++M E G+ P+ ++Y S I C C++G + EA  +  DM  + VLP++  Y+ LI+G C  
Sbjct: 480  EQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMV 539

Query: 541  KDFSGAYVWCREMFEKGFIPSFNIYNELMTGLQNGGMLQQAE 666
                 A  +  EM      P+   YN L+ GL   G L +AE
Sbjct: 540  GKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAE 581



 Score =  109 bits (273), Expect = 6e-22
 Identities = 69/233 (29%), Positives = 109/233 (46%), Gaps = 1/233 (0%)
 Frame = +1

Query: 1   GLCKEGSVAQAEELAHSLPDKGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEP 180
           GLCK   + +A  L   +   G  PD  TYS +  G     +   A+ELY+      I  
Sbjct: 290 GLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRI 349

Query: 181 SLYTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALH 360
           + YT   L+ G   +G V+K +++ +   E  L  D V+Y+  +  + + GD+ KA    
Sbjct: 350 NNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTI 409

Query: 361 QEMVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKA 540
           + M   G+ P+ + +NS I   C    + +A      M  K V PS  TY+TLI+G+ K 
Sbjct: 410 ERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKL 469

Query: 541 KDFSGAYVWCREMFEKGFIPSFNIYNELMTGLQNGGMLQQAE-VLNELWEKGV 696
             F   +    +M E G  P+   Y  L+  L   G + +AE VL ++  +GV
Sbjct: 470 CTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGV 522



 Score =  108 bits (271), Expect = 1e-21
 Identities = 65/239 (27%), Positives = 119/239 (49%), Gaps = 1/239 (0%)
 Frame = +1

Query: 1   GLCKEGSVAQAEELAHSLPDKGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEP 180
           G CK G +  A ++   + +K V+P+ +T+++++ G   +   ++A  L + M+     P
Sbjct: 255 GYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMP 314

Query: 181 SLYTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALH 360
             YTY  L  G     D     +L++   E+ +  +    S L+    K G V KA  + 
Sbjct: 315 DGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEIL 374

Query: 361 QEMVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKA 540
           ++  E G+  D + YN+ +  +CR G++ +A+     ME   + P+S+T+++LI+  C  
Sbjct: 375 KKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDM 434

Query: 541 KDFSGAYVWCREMFEKGFIPSFNIYNELMTGLQNGGMLQQA-EVLNELWEKGVAEHTVS 714
           K+   A  W ++M EKG  PS   YN L+ G        +  ++L ++ E GV  + VS
Sbjct: 435 KEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVS 493



 Score =  103 bits (256), Expect = 6e-20
 Identities = 70/265 (26%), Positives = 124/265 (46%), Gaps = 12/265 (4%)
 Frame = +1

Query: 4   LCKEGSVAQAEELAHSLPDKGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEPS 183
           L  E    +  +L   + + G   D   Y+  I     L N +  +E   +M+   + P+
Sbjct: 151 LVNEKQFVKVVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPN 210

Query: 184 LYTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALHQ 363
           ++ Y+ LI G   E  ++  + +  +M   NL    V Y+ LI  + K G++  AF + +
Sbjct: 211 VFIYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRE 270

Query: 364 EMVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKAK 543
            M EK + P+ + +NS +   C+   ++EA  L  +MEV   +P   TYS L +G  +  
Sbjct: 271 RMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCD 330

Query: 544 DFSGAYVWCREMFEKGFIPSFNIYNELMTGLQNGGMLQQA-EVLNELWEKG-VAEHTVSD 717
           D +GA     +  EKG   +    + L+ GL   G +++A E+L +  E G VA+  + +
Sbjct: 331 DGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYN 390

Query: 718 ----------DLSAAAMM*QRMLSF 762
                     D++ A +  +RM SF
Sbjct: 391 TFVNGYCRIGDMNKAILTIERMESF 415



 Score =  102 bits (253), Expect = 1e-19
 Identities = 59/225 (26%), Positives = 109/225 (48%)
 Frame = +1

Query: 7    CKEGSVAQAEELAHSLPDKGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEPSL 186
            C    + +AEE    + +KGV+P   TY+T+I GY  L    +  ++ + M+ + ++P++
Sbjct: 432  CDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNV 491

Query: 187  YTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALHQE 366
             +Y +LI     +G + + + + +DM+ + + P+  VY+ LI      G V+ A     E
Sbjct: 492  VSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDE 551

Query: 367  MVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKAKD 546
            M+   I P  + YN  I   C++G + EA      +      P  +TY++LI G+  A +
Sbjct: 552  MMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGN 611

Query: 547  FSGAYVWCREMFEKGFIPSFNIYNELMTGLQNGGMLQQAEVLNEL 681
             S        M   G  P+   Y+ L++G    G+    ++ NE+
Sbjct: 612  VSKCLGLYETMKNLGIKPTVRTYHPLISGCSKEGIELVEKLYNEM 656



 Score = 84.3 bits (207), Expect = 3e-14
 Identities = 52/181 (28%), Positives = 90/181 (49%)
 Frame = +1

Query: 130 QKALELYQTMKSLFIEPSLYTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSAL 309
           ++A+ELY+ M+     PSL +   L     NE    KV DL  ++       D  +Y+  
Sbjct: 123 REAVELYEFMRRDGKLPSLVSLSLLFSCLVNEKQFVKVVDLFMEIENSGFRTDTFMYAKA 182

Query: 310 IRCHAKYGDVRKAFALHQEMVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEV 489
           I+   K  +++        M ++G+ P+   YN  I   CRE  +++A  +F++M    +
Sbjct: 183 IQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMCNINL 242

Query: 490 LPSSVTYSTLIEGHCKAKDFSGAYVWCREMFEKGFIPSFNIYNELMTGLQNGGMLQQAEV 669
           + S VTY+TLI+G+CK  +   A+     M EK   P+   +N L++GL     +++A  
Sbjct: 243 VGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARS 302

Query: 670 L 672
           L
Sbjct: 303 L 303



 Score = 72.0 bits (175), Expect = 1e-10
 Identities = 55/235 (23%), Positives = 102/235 (43%), Gaps = 5/235 (2%)
 Frame = +1

Query: 7   CKEGSVAQAEELAHSLPDKGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEPSL 186
           CK   + +A EL   +   G  P  V+ S +     N     K ++L+  +++       
Sbjct: 117 CKSKMLREAVELYEFMRRDGKLPSLVSLSLLFSCLVNEKQFVKVVDLFMEIENSGFRTDT 176

Query: 187 YTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALHQE 366
           + Y   I+      +++   +    M ++ + P+  +Y+ LI    +   +R A  +  E
Sbjct: 177 FMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDE 236

Query: 367 MVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKAKD 546
           M    +    + YN+ I  +C+ G +  A  +   M+ K V P+ +T+++L+ G CK + 
Sbjct: 237 MCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRK 296

Query: 547 FSGAYVWCREMFEKGFIPSFNIYNELMTGL-----QNGGMLQQAEVLNELWEKGV 696
              A    +EM   GF+P    Y+ L  GL      NG M    E+  +  EKG+
Sbjct: 297 MKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAM----ELYEQATEKGI 347


>ref|XP_002316451.1| predicted protein [Populus trichocarpa] gi|222865491|gb|EEF02622.1|
            predicted protein [Populus trichocarpa]
          Length = 707

 Score =  239 bits (610), Expect = 5e-61
 Identities = 118/248 (47%), Positives = 168/248 (67%), Gaps = 1/248 (0%)
 Frame = +1

Query: 1    GLCKEGSVAQAEELAHSLPDKGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEP 180
            GLCK G + +AEE+   +   G  PD +TY+++I GY N GNSQK LELY+TMK L ++P
Sbjct: 461  GLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKP 520

Query: 181  SLYTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALH 360
            ++ T+H LI G   EG ++  + L  +ML+ NL+PDRVVY+A+I C+ + G V+KAF+L 
Sbjct: 521  TINTFHPLISGCSKEG-IKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQ 579

Query: 361  QEMVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKA 540
            +EMV+ G+ PD   YNS I+ H +EG + E   L +DM+ K ++P + TYS LI+GHC  
Sbjct: 580  KEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDL 639

Query: 541  KDFSGAYVWCREMFEKGFIPSFNIYNELMTGLQNGGMLQQAE-VLNELWEKGVAEHTVSD 717
            KDF+GAYVW REM E GF+P+  I NEL TGL+  G LQ+A+ + +E+   G+     ++
Sbjct: 640  KDFNGAYVWYREMLENGFLPNVCICNELSTGLRKDGRLQEAQSICSEMIANGMDNLDTNE 699

Query: 718  DLSAAAMM 741
            DLS  A M
Sbjct: 700  DLSDVAKM 707



 Score =  124 bits (312), Expect = 2e-26
 Identities = 71/222 (31%), Positives = 120/222 (54%)
 Frame = +1

Query: 1   GLCKEGSVAQAEELAHSLPDKGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEP 180
           GLCKEG V +AEE+  SL + G+ P  V Y+TI+ GY  +G+  +A+   + M+S  + P
Sbjct: 251 GLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRP 310

Query: 181 SLYTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALH 360
           +   ++++I  F     + K ++  + M+ + +AP    Y+ LI  + +     + F + 
Sbjct: 311 NCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQIL 370

Query: 361 QEMVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKA 540
           +EM E G  P+ ++Y S I C C++G + EA  +  DM  + VLP++  Y+ LI+G C  
Sbjct: 371 EEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTV 430

Query: 541 KDFSGAYVWCREMFEKGFIPSFNIYNELMTGLQNGGMLQQAE 666
                A  +  EM + G   +   YN L+ GL   G L++AE
Sbjct: 431 GKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAE 472



 Score =  106 bits (265), Expect = 5e-21
 Identities = 68/234 (29%), Positives = 116/234 (49%), Gaps = 2/234 (0%)
 Frame = +1

Query: 1   GLCKEGSVAQAEELAHSLPDKGVSPDAVTYSTIILGYFNLGNSQ-KALELYQTMKSLFIE 177
           GLCK   + +A  + + +   G  PD  TYS I  G     +    AL+LY+      ++
Sbjct: 180 GLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVK 239

Query: 178 PSLYTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFAL 357
              YT   L+ G   EG V+K +++ + ++E  L P  V+Y+ ++  + + GD+ +A   
Sbjct: 240 IDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILT 299

Query: 358 HQEMVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCK 537
            ++M  +G+ P+ +A+NS I   C    + +A      M  K + PS  TY+ LI+G+ +
Sbjct: 300 IEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGR 359

Query: 538 AKDFSGAYVWCREMFEKGFIPSFNIYNELMTGLQNGGMLQQAE-VLNELWEKGV 696
              FS  +    EM E G  P+   Y  L+  L   G + +AE VL ++  +GV
Sbjct: 360 LCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGV 413



 Score =  106 bits (264), Expect = 7e-21
 Identities = 65/213 (30%), Positives = 113/213 (53%), Gaps = 2/213 (0%)
 Frame = +1

Query: 64  GVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEPSLYTYHALIRGFGNEGDVQKV 243
           G  PD + Y   +L    LG+ + A+EL++TMK   + P+++ Y+ LI G   E  ++  
Sbjct: 61  GFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDA 120

Query: 244 DDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALHQEMVEKGIGPDRMAYNSRIIC 423
           + L  +M  +NL P+RV ++ LI  + K G+V  A  L + M ++ + P  + +NS +  
Sbjct: 121 EKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSG 180

Query: 424 HCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKAKDFSGAYV-WCREMFEKGFIP 600
            C+   ++EA  + N+++    +P   TYS + +G  K+ D +GA +   RE   KG   
Sbjct: 181 LCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKI 240

Query: 601 SFNIYNELMTGLQNGGMLQQA-EVLNELWEKGV 696
                + L+ GL   G +++A EVL  L E G+
Sbjct: 241 DNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGL 273



 Score =  102 bits (253), Expect = 1e-19
 Identities = 66/275 (24%), Positives = 126/275 (45%), Gaps = 37/275 (13%)
 Frame = +1

Query: 1   GLCKEGSVAQAEELAHSLPDKGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEP 180
           GLCKE  +  AE+L   +  + + P+ VT++T+I GY   G    A+ L + MK   +EP
Sbjct: 110 GLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEP 169

Query: 181 SLYTYHALIRGFGNEGDVQKVD------------------------------------DL 252
           S+ T+++L+ G      +++                                      DL
Sbjct: 170 SIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDL 229

Query: 253 HQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALHQEMVEKGIGPDRMAYNSRIICHCR 432
           +++ + + +  D    S L+    K G V KA  + + +VE G+ P  + YN+ +  +C+
Sbjct: 230 YREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQ 289

Query: 433 EGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKAKDFSGAYVWCREMFEKGFIPSFNI 612
            G++  A+     ME + + P+ + ++++I+  C+ +    A  W ++M  KG  PS   
Sbjct: 290 IGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVET 349

Query: 613 YNELMTGLQNGGMLQQA-EVLNELWEKGVAEHTVS 714
           YN L+ G     +  +  ++L E+ E G   + +S
Sbjct: 350 YNILIDGYGRLCVFSRCFQILEEMEENGEKPNVIS 384



 Score = 99.4 bits (246), Expect = 9e-19
 Identities = 59/235 (25%), Positives = 116/235 (49%)
 Frame = +1

Query: 7    CKEGSVAQAEELAHSLPDKGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEPSL 186
            C+   + +AEE    +  KG++P   TY+ +I GY  L    +  ++ + M+    +P++
Sbjct: 323  CEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNV 382

Query: 187  YTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALHQE 366
             +Y +LI     +G + + + + +DM+ + + P+  +Y+ LI      G +R+A     E
Sbjct: 383  ISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDE 442

Query: 367  MVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKAKD 546
            M + GIG   + YNS I   C+ G ++EA  +F  +      P  +TY++LI G+  A +
Sbjct: 443  MSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGN 502

Query: 547  FSGAYVWCREMFEKGFIPSFNIYNELMTGLQNGGMLQQAEVLNELWEKGVAEHTV 711
                      M + G  P+ N ++ L++G    G+  +  + NE+ +  ++   V
Sbjct: 503  SQKCLELYETMKKLGLKPTINTFHPLISGCSKEGIKLKETLFNEMLQMNLSPDRV 557



 Score = 89.4 bits (220), Expect = 9e-16
 Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 1/181 (0%)
 Frame = +1

Query: 142 ELYQTMKSLFIEPSLYTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALIRCH 321
           ELY  M+     PS      ++           V DL ++M+     PD++VY   +   
Sbjct: 17  ELYDFMRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAMLAA 76

Query: 322 AKYGDVRKAFALHQEMVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEVLPSS 501
            K GD++ A  L + M  + + P+   YN  I   C+E  +++A  LF +M V+ ++P+ 
Sbjct: 77  VKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNR 136

Query: 502 VTYSTLIEGHCKAKDFSGAYVWCREMFEKGFIPSFNIYNELMTGLQNGGMLQQAE-VLNE 678
           VT++TLI+G+CKA +   A      M ++   PS   +N L++GL     +++A  +LNE
Sbjct: 137 VTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNE 196

Query: 679 L 681
           +
Sbjct: 197 I 197



 Score = 82.4 bits (202), Expect = 1e-13
 Identities = 61/234 (26%), Positives = 105/234 (44%), Gaps = 3/234 (1%)
 Frame = +1

Query: 4   LCKEGSV-AQAEELAHSLPDKGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEP 180
           +C E  + +Q  EL   +  +G  P       I+            L+L++ M  L   P
Sbjct: 5   VCSESKMHSQVSELYDFMRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLGFRP 64

Query: 181 SLYTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALH 360
               Y   +      GD++   +L + M  + + P+  VY+ LI    K   +R A  L 
Sbjct: 65  DKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLF 124

Query: 361 QEMVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKA 540
            EM  + + P+R+ +N+ I  +C+ G V  A+ L   M+ ++V PS +T+++L+ G CKA
Sbjct: 125 GEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKA 184

Query: 541 KDFSGAYVWCREMFEKGFIPSFNIYNELMTGL--QNGGMLQQAEVLNELWEKGV 696
           +    A     E+   GF+P    Y+ +  GL   + G     ++  E   KGV
Sbjct: 185 RRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGV 238



 Score = 61.2 bits (147), Expect = 3e-07
 Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 4/162 (2%)
 Frame = +1

Query: 238 KVDDLHQDMLEQNLAPD----RVVYSALIRCHAKYGDVRKAFALHQEMVEKGIGPDRMAY 405
           +V +L+  M ++   P     R++  +L+    K+ +V   F   +EMV  G  PD++ Y
Sbjct: 14  QVSELYDFMRQEGRLPSFGYVRMIVESLVESK-KFDNVLDLF---KEMVGLGFRPDKLVY 69

Query: 406 NSRIICHCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKAKDFSGAYVWCREMFE 585
              ++   + G+++ A+ LF  M+ ++V+P+   Y+ LI G CK K    A     EM  
Sbjct: 70  GRAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSV 129

Query: 586 KGFIPSFNIYNELMTGLQNGGMLQQAEVLNELWEKGVAEHTV 711
           +  +P+   +N L+ G    G +  A  L E  +K   E ++
Sbjct: 130 RNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSI 171


>ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
            mitochondrial-like [Glycine max]
          Length = 777

 Score =  191 bits (486), Expect = 1e-46
 Identities = 95/225 (42%), Positives = 152/225 (67%)
 Frame = +1

Query: 1    GLCKEGSVAQAEELAHSLPDKGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEP 180
            GL + G V +AE+L   +  KG +PD +TY+++I GY    N+QK LELY  MK L I+P
Sbjct: 544  GLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSLISGYAKSVNTQKCLELYDKMKILGIKP 603

Query: 181  SLYTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALH 360
            ++ T+H LI     EG V  +D + Q+ML+ +L PD+ VY+ +I  +A+ G+V KA +LH
Sbjct: 604  TVGTFHPLIYACRKEG-VVTMDKMFQEMLQMDLVPDQFVYNEMIYSYAEDGNVMKAMSLH 662

Query: 361  QEMVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKA 540
            Q+MV++G+  D++ YNS I+ + R+  V E  HL +DM+ K ++P   TY+ LI+G C  
Sbjct: 663  QQMVDQGVDCDKVTYNSLILAYLRDRRVSEIKHLVDDMKAKGLVPKVDTYNILIKGLCDL 722

Query: 541  KDFSGAYVWCREMFEKGFIPSFNIYNELMTGLQNGGMLQQAEVLN 675
            KDF+GAY W REM E+G + + ++  +L++GL+  GML++A++++
Sbjct: 723  KDFNGAYFWYREMVERGLLLNVSMCYQLISGLREEGMLREAQIVS 767



 Score =  122 bits (307), Expect = 7e-26
 Identities = 74/270 (27%), Positives = 132/270 (48%), Gaps = 32/270 (11%)
 Frame = +1

Query: 1    GLCKEGSVAQAEELAHSLPDKGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEP 180
            GLCK   +  A +L   +  + + P+ VTY+T+I GY  +G  ++AL   + MK   +E 
Sbjct: 201  GLCKVRRIKDARKLFDEMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVEC 260

Query: 181  SLYTYHALIRGFGNEGDVQKVDDLHQDMLE------------------------------ 270
            +L TY++L+ G    G   +VDD  + +LE                              
Sbjct: 261  NLVTYNSLLNGLCGSG---RVDDAREVLLEMEGSGFLPGGFLSFVFDDHSNGAGDDGLFD 317

Query: 271  -QNLAPDRVVYSALIRCHAKYGDVRKAFALHQEMVEKGIGPDRMAYNSRIICHCREGNVQ 447
             + +  D   Y  L+    + G + KA  +  ++VE G+ P +++YN  +  +C+EG+V+
Sbjct: 318  GKEIRIDERTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVK 377

Query: 448  EAVHLFNDMEVKEVLPSSVTYSTLIEGHCKAKDFSGAYVWCREMFEKGFIPSFNIYNELM 627
            +A+     ME + + P+ +T++T+I   C+  +   A  W R M EKG  P+   YN L+
Sbjct: 378  KAILTTEQMEERGLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLI 437

Query: 628  TGL-QNGGMLQQAEVLNELWEKGVAEHTVS 714
             G  Q G  ++  E L+E+ + G+  + +S
Sbjct: 438  NGYGQKGHFVRCFEFLDEMDKAGIKPNVIS 467



 Score =  117 bits (294), Expect = 2e-24
 Identities = 65/224 (29%), Positives = 119/224 (53%)
 Frame = +1

Query: 1    GLCKEGSVAQAEELAHSLPDKGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEP 180
            GLC+ G + +AEE+   L + GV+P  ++Y+ ++  Y   G+ +KA+   + M+   +EP
Sbjct: 334  GLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQMEERGLEP 393

Query: 181  SLYTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALH 360
            +  T++ +I  F   G+V   +   + M+E+ ++P    Y++LI  + + G   + F   
Sbjct: 394  NRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFL 453

Query: 361  QEMVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKA 540
             EM + GI P+ ++Y S I C C++  + +A  +  DM  + V P++  Y+ LIE  C  
Sbjct: 454  DEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNMLIEASCSL 513

Query: 541  KDFSGAYVWCREMFEKGFIPSFNIYNELMTGLQNGGMLQQAEVL 672
                 A+ +  EM + G   +   YN L+ GL   G +++AE L
Sbjct: 514  SKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDL 557



 Score =  100 bits (248), Expect = 5e-19
 Identities = 61/229 (26%), Positives = 112/229 (48%), Gaps = 4/229 (1%)
 Frame = +1

Query: 7    CKEGSVAQAEELAHSLPDKGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEPSL 186
            C+ G V  AE     + +KGVSP   TY+++I GY   G+  +  E    M    I+P++
Sbjct: 406  CETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIKPNV 465

Query: 187  YTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALHQE 366
             +Y +LI     +  +   + +  DM+ + ++P+  +Y+ LI        ++ AF    E
Sbjct: 466  ISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNMLIEASCSLSKLKDAFRFFDE 525

Query: 367  MVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKAKD 546
            M++ GI    + YN+ I    R G V++A  LF  M  K   P  +TY++LI G+ K+ +
Sbjct: 526  MIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSLISGYAKSVN 585

Query: 547  FSGAYVWCREMFEK----GFIPSFNIYNELMTGLQNGGMLQQAEVLNEL 681
                   C E+++K    G  P+   ++ L+   +  G++   ++  E+
Sbjct: 586  TQK----CLELYDKMKILGIKPTVGTFHPLIYACRKEGVVTMDKMFQEM 630



 Score = 94.4 bits (233), Expect = 3e-17
 Identities = 57/188 (30%), Positives = 96/188 (51%), Gaps = 1/188 (0%)
 Frame = +1

Query: 133 KALELYQTMKSLFIEPSLYTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALI 312
           +A +LY TM+     PS  + + L+R   +    +K   +  D+++    PD V Y   +
Sbjct: 105 EATDLYSTMRKDGFVPSTRSVNRLLRTLVDSRHFEKTLAVFADVIDSGTRPDAVAYGKAV 164

Query: 313 RCHAKYGDVRKAFALHQEMVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEVL 492
           +      D+ K F L + MV+ G+GP   AYN  +   C+   +++A  LF++M  + ++
Sbjct: 165 QAAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLFDEMIQRNMV 224

Query: 493 PSSVTYSTLIEGHCKAKDFSGAYVWCREMFEKGFIPSFNIYNELMTGLQNGGMLQQA-EV 669
           P++VTY+TLI+G+CK      A  +   M E+    +   YN L+ GL   G +  A EV
Sbjct: 225 PNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSLLNGLCGSGRVDDAREV 284

Query: 670 LNELWEKG 693
           L E+   G
Sbjct: 285 LLEMEGSG 292



 Score = 92.4 bits (228), Expect = 1e-16
 Identities = 57/213 (26%), Positives = 105/213 (49%), Gaps = 1/213 (0%)
 Frame = +1

Query: 61  KGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEPSLYTYHALIRGFGNEGDVQK 240
           K +  D  TY  ++ G   +G  +KA E+   +    + PS  +Y+ L+  +  EGDV+K
Sbjct: 319 KEIRIDERTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKK 378

Query: 241 VDDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALHQEMVEKGIGPDRMAYNSRII 420
                + M E+ L P+R+ ++ +I    + G+V  A    + MVEKG+ P    YNS I 
Sbjct: 379 AILTTEQMEERGLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLIN 438

Query: 421 CHCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKAKDFSGAYVWCREMFEKGFIP 600
            + ++G+        ++M+   + P+ ++Y +LI   CK +    A +   +M  +G  P
Sbjct: 439 GYGQKGHFVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSP 498

Query: 601 SFNIYNELMTGLQNGGMLQQA-EVLNELWEKGV 696
           +  IYN L+    +   L+ A    +E+ + G+
Sbjct: 499 NAEIYNMLIEASCSLSKLKDAFRFFDEMIQSGI 531



 Score = 80.5 bits (197), Expect = 4e-13
 Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 1/220 (0%)
 Frame = +1

Query: 58  DKGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEPSLYTYHALIRGFGNEGDVQ 237
           D G  PDAV Y   +     L +  K  EL ++M    + PS++ Y+ ++ G      ++
Sbjct: 150 DSGTRPDAVAYGKAVQAAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIK 209

Query: 238 KVDDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALHQEMVEKGIGPDRMAYNSRI 417
               L  +M+++N+ P+ V Y+ LI  + K G + +A    + M E+ +  + + YNS +
Sbjct: 210 DARKLFDEMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSLL 269

Query: 418 ICHCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKAKDFSGAYVWCREMFEKGFI 597
              C  G V +A  +  +ME    LP     S + + H       G +       ++   
Sbjct: 270 NGLCGSGRVDDAREVLLEMEGSGFLPGGF-LSFVFDDHSNGAGDDGLFDGKEIRIDE--- 325

Query: 598 PSFNIYNELMTGLQNGGMLQQA-EVLNELWEKGVAEHTVS 714
                Y  L+ GL   G +++A EVL +L E GV    +S
Sbjct: 326 ---RTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKIS 362


>ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At5g12100, mitochondrial; Flags: Precursor
            gi|9759377|dbj|BAB10028.1| unnamed protein product
            [Arabidopsis thaliana] gi|28973713|gb|AAO64173.1| unknown
            protein [Arabidopsis thaliana] gi|29824237|gb|AAP04079.1|
            unknown protein [Arabidopsis thaliana]
            gi|110737169|dbj|BAF00534.1| hypothetical protein
            [Arabidopsis thaliana] gi|332004380|gb|AED91763.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 816

 Score =  181 bits (459), Expect = 2e-43
 Identities = 97/244 (39%), Positives = 154/244 (63%), Gaps = 1/244 (0%)
 Frame = +1

Query: 1    GLCKEGSVAQAEELAHSLPDKGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEP 180
            GL   G +++AE+L   +  KG+ PD  TY+++I GY   GN Q+ + LY+ MK   I+P
Sbjct: 573  GLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKP 632

Query: 181  SLYTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALH 360
            +L TYH LI     EG ++  + L  +M   +L PD +VY+ ++ C+A +GD+ KAF L 
Sbjct: 633  TLKTYHLLISLCTKEG-IELTERLFGEM---SLKPDLLVYNGVLHCYAVHGDMEKAFNLQ 688

Query: 361  QEMVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKA 540
            ++M+EK IG D+  YNS I+   + G + E   L ++M  +E+ P + TY+ +++GHC+ 
Sbjct: 689  KQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEV 748

Query: 541  KDFSGAYVWCREMFEKGFIPSFNIYNELMTGLQNGGMLQQAE-VLNELWEKGVAEHTVSD 717
            KD+  AYVW REM EKGF+    I NEL++GL+     ++AE V++E+  + + + TV +
Sbjct: 749  KDYMSAYVWYREMQEKGFLLDVCIGNELVSGLKEEWRSKEAEIVISEMNGRMLGDVTVDE 808

Query: 718  DLSA 729
            DLSA
Sbjct: 809  DLSA 812



 Score =  118 bits (295), Expect = 2e-24
 Identities = 69/234 (29%), Positives = 124/234 (52%), Gaps = 1/234 (0%)
 Frame = +1

Query: 1   GLCKEGSVAQAEELAHSLPDKGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEP 180
           GL K G V  AE +   + D G  PDA T+S +  GY +   ++ AL +Y+T     ++ 
Sbjct: 293 GLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKM 352

Query: 181 SLYTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALH 360
           + YT   L+     EG ++K +++    + + L P+ V+Y+ +I  + + GD+  A    
Sbjct: 353 NAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKI 412

Query: 361 QEMVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKA 540
           + M ++G+ PD +AYN  I   C  G ++ A    N M++K V PS  TY+ LI G+ + 
Sbjct: 413 EAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRK 472

Query: 541 KDFSGAYVWCREMFEKGFIPSFNIYNELMTGLQNGGMLQQAEVL-NELWEKGVA 699
            +F   +   +EM + G +P+   Y  L+  L  G  L +A+++  ++ ++GV+
Sbjct: 473 YEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVS 526



 Score =  117 bits (292), Expect = 4e-24
 Identities = 65/234 (27%), Positives = 124/234 (52%), Gaps = 1/234 (0%)
 Frame = +1

Query: 1   GLCKEGSVAQAEELAHSLPDKGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEP 180
           GLCK   +  AE+L   +  + + P  +TY+T+I GY   GN +K+ ++ + MK+  IEP
Sbjct: 223 GLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEP 282

Query: 181 SLYTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALH 360
           SL T++ L++G    G V+  +++ ++M +    PD   +S L   ++       A  ++
Sbjct: 283 SLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVY 342

Query: 361 QEMVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKA 540
           +  V+ G+  +    +  +   C+EG +++A  +      K ++P+ V Y+T+I+G+C+ 
Sbjct: 343 ETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRK 402

Query: 541 KDFSGAYVWCREMFEKGFIPSFNIYNELMTGLQNGGMLQQAE-VLNELWEKGVA 699
            D  GA +    M ++G  P    YN L+      G ++ AE  +N++  KGV+
Sbjct: 403 GDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVS 456



 Score =  112 bits (281), Expect = 8e-23
 Identities = 72/232 (31%), Positives = 119/232 (51%), Gaps = 1/232 (0%)
 Frame = +1

Query: 4    LCKEGSVAQAEELAHSLPDKGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEPS 183
            LCKEG + +AEE+      KG+ P+ V Y+T+I GY   G+   A    + M+   ++P 
Sbjct: 364  LCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPD 423

Query: 184  LYTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALHQ 363
               Y+ LIR F   G+++  +     M  + ++P    Y+ LI  + +  +  K F + +
Sbjct: 424  HLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILK 483

Query: 364  EMVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKAK 543
            EM + G  P+ ++Y + I C C+   + EA  +  DME + V P    Y+ LI+G C   
Sbjct: 484  EMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKG 543

Query: 544  DFSGAYVWCREMFEKGFIPSFNIYNELMTGLQNGGMLQQAE-VLNELWEKGV 696
                A+ + +EM +KG   +   YN L+ GL   G L +AE +L E+  KG+
Sbjct: 544  KIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGL 595



 Score =  108 bits (271), Expect = 1e-21
 Identities = 65/226 (28%), Positives = 111/226 (49%)
 Frame = +1

Query: 1    GLCKEGSVAQAEELAHSLPDKGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEP 180
            G C++G +  A     ++  +G+ PD + Y+ +I  +  LG  + A +    MK   + P
Sbjct: 398  GYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSP 457

Query: 181  SLYTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALH 360
            S+ TY+ LI G+G + +  K  D+ ++M +    P+ V Y  LI C  K   + +A  + 
Sbjct: 458  SVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVK 517

Query: 361  QEMVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKA 540
            ++M ++G+ P    YN  I   C +G +++A     +M  K +  + VTY+TLI+G    
Sbjct: 518  RDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMT 577

Query: 541  KDFSGAYVWCREMFEKGFIPSFNIYNELMTGLQNGGMLQQAEVLNE 678
               S A     E+  KG  P    YN L++G    G +Q+   L E
Sbjct: 578  GKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYE 623



 Score = 84.7 bits (208), Expect = 2e-14
 Identities = 62/239 (25%), Positives = 109/239 (45%)
 Frame = +1

Query: 7    CKEGSVAQAEELAHSLPDKGVSPDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEPSL 186
            C+ G +  AE+  + +  KGVSP   TY+ +I GY       K  ++ + M+     P++
Sbjct: 435  CELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNV 494

Query: 187  YTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALHQE 366
             +Y  LI        + +   + +DM ++ ++P   +Y+ LI      G +  AF   +E
Sbjct: 495  VSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKE 554

Query: 367  MVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKAKD 546
            M++KGI  + + YN+ I      G + EA  L  ++  K + P   TY++LI G+  A +
Sbjct: 555  MLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGN 614

Query: 547  FSGAYVWCREMFEKGFIPSFNIYNELMTGLQNGGMLQQAEVLNELWEKGVAEHTVSDDL 723
                     EM   G  P+   Y+ L++     G+        EL E+   E ++  DL
Sbjct: 615  VQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEGI--------ELTERLFGEMSLKPDL 665



 Score = 81.3 bits (199), Expect = 2e-13
 Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 1/188 (0%)
 Frame = +1

Query: 133 KALELYQTMKSLFIEPSLYTYHALIRGFGNEGDVQKVDDLHQDMLEQNLAPDRVVYSALI 312
           +A +L+  +++  I PS  +   L+         +   ++  ++LE +  P + +Y   I
Sbjct: 127 EAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAI 186

Query: 313 RCHAKYGDVRKAFALHQEMVEKGIGPDRMAYNSRIICHCREGNVQEAVHLFNDMEVKEVL 492
           +   K  DV K   L   M    I P    YN  I   C+   + +A  LF++M  + +L
Sbjct: 187 QAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLL 246

Query: 493 PSSVTYSTLIEGHCKAKDFSGAYVWCREMFEKGFIPSFNIYNELMTGLQNGGMLQQAE-V 669
           PS +TY+TLI+G+CKA +   ++     M      PS   +N L+ GL   GM++ AE V
Sbjct: 247 PSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENV 306

Query: 670 LNELWEKG 693
           L E+ + G
Sbjct: 307 LKEMKDLG 314



 Score = 76.3 bits (186), Expect = 8e-12
 Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 1/214 (0%)
 Frame = +1

Query: 73  PDAVTYSTIILGYFNLGNSQKALELYQTMKSLFIEPSLYTYHALIRGFGNEGDVQKVDDL 252
           P    Y   I     L +  K LEL+  MK   I PS++ Y+ LI G      +   + L
Sbjct: 177 PSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQL 236

Query: 253 HQDMLEQNLAPDRVVYSALIRCHAKYGDVRKAFALHQEMVEKGIGPDRMAYNSRIICHCR 432
             +ML + L P  + Y+ LI  + K G+  K+F + + M    I P  + +N+ +    +
Sbjct: 237 FDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFK 296

Query: 433 EGNVQEAVHLFNDMEVKEVLPSSVTYSTLIEGHCKAKDFSGAYVWCREMFEKGFIPSFNI 612
            G V++A ++  +M+    +P + T+S L +G+   +    A        + G   +   
Sbjct: 297 AGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYT 356

Query: 613 YNELMTGLQNGGMLQQA-EVLNELWEKGVAEHTV 711
            + L+  L   G +++A E+L     KG+  + V
Sbjct: 357 CSILLNALCKEGKIEKAEEILGREMAKGLVPNEV 390