BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00029873
         (284 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago t...   114   6e-24
ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago t...   100   2e-19
ref|XP_002331487.1| predicted protein [Populus trichocarpa] gi|2...    96   3e-18
ref|XP_002305377.1| predicted protein [Populus trichocarpa] gi|2...    96   3e-18
gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]         95   5e-18

>ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355501015|gb|AES82218.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 607

 Score =  114 bits (286), Expect = 6e-24
 Identities = 62/97 (63%), Positives = 70/97 (72%), Gaps = 5/97 (5%)
 Frame = +3

Query: 9   SSLVDMYAKCGDISAAVSVFESIEIKNLESWNSIIGGY-----ATNALQEYGMMKECGFK 173
           +SLVDMYAKCGD+ AA  VFESI  KNL SWN+IIGGY     AT AL+E+  MK  G  
Sbjct: 308 TSLVDMYAKCGDMDAAFGVFESIRDKNLVSWNAIIGGYASHGLATRALEEFDRMKVVG-T 366

Query: 174 PDQITLVNVLSARAHAGLVEEGELHFESMERPYGIKA 284
           PD++T VNVLSA  HAGLVEEGE HF  M   YGI+A
Sbjct: 367 PDEVTFVNVLSACVHAGLVEEGEKHFTDMLTKYGIQA 403


>ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355500337|gb|AES81540.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 1024

 Score =  100 bits (248), Expect = 2e-19
 Identities = 47/98 (47%), Positives = 68/98 (69%), Gaps = 5/98 (5%)
 Frame = +3

Query: 3   LSSSLVDMYAKCGDISAAVSVFESIEIKNLESWNSIIGGYATN-----ALQEYGMMKECG 167
           L +++VDMYAKCG I AA  VF ++  +NL SWN++I GYA N     A+  +  M+  G
Sbjct: 528 LENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMG 587

Query: 168 FKPDQITLVNVLSARAHAGLVEEGELHFESMERPYGIK 281
           F+P+ IT V++L+A +H GL+ EG  +F++MER YGIK
Sbjct: 588 FEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIK 625


>ref|XP_002331487.1| predicted protein [Populus trichocarpa] gi|222873565|gb|EEF10696.1|
           predicted protein [Populus trichocarpa]
          Length = 606

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 50/98 (51%), Positives = 67/98 (68%), Gaps = 5/98 (5%)
 Frame = +3

Query: 3   LSSSLVDMYAKCGDISAAVSVFESIEIKNLESWNSIIGGYATN-----ALQEYGMMKECG 167
           L+++L+DMYAKCG I  A  VF  +  +NL SWNS+I  YA++     AL  +  M   G
Sbjct: 359 LANALIDMYAKCGVIHEAAKVFNDMPERNLVSWNSMITAYASHGHAKQALSVFERMISGG 418

Query: 168 FKPDQITLVNVLSARAHAGLVEEGELHFESMERPYGIK 281
           FKPD ITLV VLSA +H GLV EG+ +F++M+R YGI+
Sbjct: 419 FKPDDITLVGVLSACSHGGLVAEGQEYFQNMKRKYGIE 456


>ref|XP_002305377.1| predicted protein [Populus trichocarpa] gi|222848341|gb|EEE85888.1|
           predicted protein [Populus trichocarpa]
          Length = 427

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 48/97 (49%), Positives = 68/97 (70%), Gaps = 5/97 (5%)
 Frame = +3

Query: 3   LSSSLVDMYAKCGDISAAVSVFESIEIKNLESWNSIIGGYATN-----ALQEYGMMKECG 167
           +S++LVDMYAKCG +  A+SVF  +  K+L SWN ++ G A +     ALQ + +M++ G
Sbjct: 177 VSNALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEG 236

Query: 168 FKPDQITLVNVLSARAHAGLVEEGELHFESMERPYGI 278
           F+PD++TLV VL A  HAG V+EG  +F +MER YGI
Sbjct: 237 FRPDKVTLVAVLCACVHAGFVDEGIRYFNNMERDYGI 273



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 33/91 (36%), Positives = 56/91 (61%), Gaps = 5/91 (5%)
 Frame = +3

Query: 9   SSLVDMYAKCGDISAAVSVFESIEIKNLESWNSIIGGYAT-----NALQEYGMMKECGFK 173
           S++V  Y K GD+  A  +F+ + +KNL SW  I+ GYA      +A++ +  M+E G K
Sbjct: 78  STMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLK 137

Query: 174 PDQITLVNVLSARAHAGLVEEGELHFESMER 266
           PD  T++++L++ A +GL+  G+    S+ER
Sbjct: 138 PDDGTVISILASCAESGLLGLGKRVHTSIER 168


>gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 48/98 (48%), Positives = 64/98 (65%), Gaps = 5/98 (5%)
 Frame = +3

Query: 3   LSSSLVDMYAKCGDISAAVSVFESIEIKNLESWNSIIGGYATN-----ALQEYGMMKECG 167
           L ++LVD YAKCG I  AV  FES+ +KN  +W ++I G ATN     AL+ +  M+E G
Sbjct: 359 LGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAG 418

Query: 168 FKPDQITLVNVLSARAHAGLVEEGELHFESMERPYGIK 281
            +P  +T + VL A +H+ LVEEG  HF+SM R YGIK
Sbjct: 419 IEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIK 456



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 30/85 (35%), Positives = 54/85 (63%), Gaps = 5/85 (5%)
 Frame = +3

Query: 3   LSSSLVDMYAKCGDISAAVSVFESIEIKNLESWNSIIGGY-----ATNALQEYGMMKECG 167
           L ++L+DMYAKCG+I  A  +F+ ++ +++ +W+++I GY        AL  +  M+   
Sbjct: 258 LVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLAR 317

Query: 168 FKPDQITLVNVLSARAHAGLVEEGE 242
            +P+ +T+V+VLSA A  G +E G+
Sbjct: 318 VEPNDVTMVSVLSACAVLGALETGK 342



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
 Frame = +3

Query: 9   SSLVDMYAKCGDISAAVSVFESIEIKNLESWNSIIGGYATN-----ALQEYGMMKECGFK 173
           SSL+ MYA CGD++AA  VF++ E   +  WN+I+  Y  N      ++ +  M E G  
Sbjct: 159 SSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVA 218

Query: 174 PDQITLVNVLSARAHAGLVEEGE 242
            D++TLV+V++A    G  + G+
Sbjct: 219 FDEVTLVSVVTACGRIGDAKLGK 241